RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 PRKCSHP14314 528 aaPredicted RBP11.58□□□□□ -0.56
TOP3A-208ENST00000542570 UBXN2AP68543 259 aa11.58□□□□□ -0.56
TOP3A-208ENST00000542570 GPR162Q16538 588 aa11.58□□□□□ -0.56
TOP3A-208ENST00000542570 C17orf53Q8N3J3 647 aaPredicted RBP11.58□□□□□ -0.56
TOP3A-208ENST00000542570 NEURL4Q96JN8 1562 aa11.58□□□□□ -0.56
TOP3A-208ENST00000542570 CDHR2Q9BYE9 1310 aa11.58□□□□□ -0.56
TOP3A-208ENST00000542570 GSG1L2A8MUP6 293 aa11.58□□□□□ -0.56
TOP3A-208ENST00000542570 TCERG1LQ5VWI1 586 aa11.58□□□□□ -0.56
TOP3A-208ENST00000542570 ZNF274Q96GC6 653 aaPredicted RBP11.58□□□□□ -0.56
TOP3A-208ENST00000542570 C16orf45Q96MC5 204 aaPredicted RBP11.58□□□□□ -0.56
TOP3A-208ENST00000542570 CSRNP1Q96S65 589 aa11.58□□□□□ -0.56
TOP3A-208ENST00000542570 SPATA31A6Q5VVP1 1343 aa11.58□□□□□ -0.56
TOP3A-208ENST00000542570 UBE2Q2LH0YL09 131 aa11.58□□□□□ -0.56
TOP3A-208ENST00000542570 SMIM22K7EJ46 135 aa11.58□□□□□ -0.56
TOP3A-208ENST00000542570 PLEKHA8P1O95397 391 aa11.58□□□□□ -0.56
TOP3A-208ENST00000542570 INF2Q27J81 1249 aa11.58□□□□□ -0.56
TOP3A-208ENST00000542570 ASIC1P78348 528 aa11.57□□□□□ -0.56
TOP3A-208ENST00000542570 NSMFQ6X4W1 530 aa11.57□□□□□ -0.56
TOP3A-208ENST00000542570 COL23A1Q86Y22 540 aaPredicted RBP11.57□□□□□ -0.56
TOP3A-208ENST00000542570 FBXO18Q8NFZ0 1043 aa11.57□□□□□ -0.56
TOP3A-208ENST00000542570 BLZF1Q9H2G9 400 aa11.57□□□□□ -0.56
TOP3A-208ENST00000542570 LRRC4BQ9NT99 713 aa11.57□□□□□ -0.56
TOP3A-208ENST00000542570 SPDYE3A6NKU9 549 aa11.57□□□□□ -0.56
TOP3A-208ENST00000542570 MATR3P43243 847 aaKnown RBP eCLIP11.57□□□□□ -0.56
TOP3A-208ENST00000542570 STX1AQ16623 288 aa11.57□□□□□ -0.56
TOP3A-208ENST00000542570 CERKLQ49MI3 558 aaPredicted RBP11.57□□□□□ -0.56
TOP3A-208ENST00000542570 PRAMEF18Q5VWM3 479 aa11.57□□□□□ -0.56
TOP3A-208ENST00000542570 KRI1Q8N9T8 703 aaKnown RBP11.57□□□□□ -0.56
TOP3A-208ENST00000542570 CALML4Q96GE6 196 aa11.57□□□□□ -0.56
TOP3A-208ENST00000542570 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.57□□□□□ -0.56
TOP3A-208ENST00000542570 SEPT11Q9NVA2 429 aaKnown RBP11.57□□□□□ -0.56
TOP3A-208ENST00000542570 ZNF609O15014 1411 aa11.57□□□□□ -0.56
TOP3A-208ENST00000542570 RGS12O14924 1447 aa11.57□□□□□ -0.56
TOP3A-208ENST00000542570 NOM1Q5C9Z4 860 aaKnown RBP11.56□□□□□ -0.56
TOP3A-208ENST00000542570 ZFYVE27Q5T4F4 411 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 DTHD1Q6ZMT9 781 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 TTLL6Q8N841 843 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 CCDC148Q8NFR7 591 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 COA7Q96BR5 231 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 ARPP21Q9UBL0 812 aaPredicted RBP11.56□□□□□ -0.56
TOP3A-208ENST00000542570 KCNH3Q9ULD8 1083 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 ZDHHC9Q9Y397 364 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 ZNF202O95125 648 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 GYS1P13807 737 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 NPR1P16066 1061 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 CUL4AQ13619 759 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 SLC51AQ86UW1 340 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 TRMT44Q8IYL2 757 aaKnown RBP11.56□□□□□ -0.56
TOP3A-208ENST00000542570 REREQ9P2R6 1566 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 SMCO2A6NFE2 343 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 SMTNL1A8MU46 457 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 MASTLQ96GX5 879 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 LLPHQ9BRT6 129 aaKnown RBP11.56□□□□□ -0.56
TOP3A-208ENST00000542570 DCP1AQ9NPI6 582 aaPredicted RBP11.56□□□□□ -0.56
TOP3A-208ENST00000542570 TBC1D7Q9P0N9 293 aa11.56□□□□□ -0.56
TOP3A-208ENST00000542570 TOP1P11387 765 aaKnown RBP11.55□□□□□ -0.56
TOP3A-208ENST00000542570 SFPQP23246 707 aaKnown RBP eCLIP11.55□□□□□ -0.56
TOP3A-208ENST00000542570 CASP7P55210 303 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 DYMQ7RTS9 669 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 BRAPQ7Z569 592 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 FAM200AQ8TCP9 573 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 CEP89Q96ST8 783 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 ATP8A2Q9NTI2 1148 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 CALML3P27482 149 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 CDC27P30260 824 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 TBC1D10BQ4KMP7 808 aaPredicted RBP11.55□□□□□ -0.56
TOP3A-208ENST00000542570 TTC38Q5R3I4 469 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 ZSCAN30Q86W11 494 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 RAB34Q9BZG1 259 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 DEF6Q9H4E7 631 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 DACH1Q9UI36 760 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 SERPINB13Q9UIV8 391 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 CCDC84Q86UT8 332 aaPredicted RBP11.55□□□□□ -0.56
TOP3A-208ENST00000542570 TBC1D16Q8TBP0 767 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 PCDHA7Q9UN72 937 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 CARMIL3Q8ND23 1372 aa11.55□□□□□ -0.56
TOP3A-208ENST00000542570 CTAGE5O15320 804 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 MTIF2P46199 727 aaKnown RBP11.54□□□□□ -0.56
TOP3A-208ENST00000542570 MKRN3Q13064 507 aaKnown RBP11.54□□□□□ -0.56
TOP3A-208ENST00000542570 PNOCQ13519 176 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 GRAMD1CQ8IYS0 662 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 TRIM47Q96LD4 638 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 GNA11P29992 359 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 FAM160A1Q05DH4 1040 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 USP32Q8NFA0 1604 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 RGPD8O14715 1765 aaPredicted RBP11.54□□□□□ -0.56
TOP3A-208ENST00000542570 TMEM232C9JQI7 657 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 N4BP3O15049 544 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 SLURP2P0DP57 97 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 MYCLP12524 364 aaPredicted RBP11.54□□□□□ -0.56
TOP3A-208ENST00000542570 UBASH3AP57075 661 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 ICA1Q05084 483 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 TTC14Q96N46 770 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 IFNKQ9P0W0 207 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 USP42Q9H9J4 1324 aaKnown RBP11.54□□□□□ -0.56
TOP3A-208ENST00000542570 SH2B2O14492 632 aaPredicted RBP11.54□□□□□ -0.56
TOP3A-208ENST00000542570 PTGS1P23219 599 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 SF3B3Q15393 1217 aaKnown RBP11.54□□□□□ -0.56
TOP3A-208ENST00000542570 RILPL1Q5EBL4 403 aa11.54□□□□□ -0.56
TOP3A-208ENST00000542570 MNS1Q8NEH6 495 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms