RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 SOCS7O14512 581 aa16.52■□□□□ 0.23
SFSWAP-210ENST00000541286 SKILP12757 684 aa16.52■□□□□ 0.23
SFSWAP-210ENST00000541286 TNNT3P45378 269 aaPredicted RBP16.52■□□□□ 0.23
SFSWAP-210ENST00000541286 AOPEPQ8N6M6 819 aa16.52■□□□□ 0.23
SFSWAP-210ENST00000541286 AATFQ9NY61 560 aaKnown RBP eCLIP16.52■□□□□ 0.23
SFSWAP-210ENST00000541286 CPLX1O14810 134 aa16.51■□□□□ 0.23
SFSWAP-210ENST00000541286 HSPD1P10809 573 aaKnown RBP16.51■□□□□ 0.23
SFSWAP-210ENST00000541286 RXRAP19793 462 aa16.51■□□□□ 0.23
SFSWAP-210ENST00000541286 GYS2P54840 703 aa16.51■□□□□ 0.23
SFSWAP-210ENST00000541286 MECOMQ03112 1051 aa16.51■□□□□ 0.23
SFSWAP-210ENST00000541286 STK38Q15208 465 aa16.51■□□□□ 0.23
SFSWAP-210ENST00000541286 ZSCAN16Q9H4T2 348 aaPredicted RBP16.51■□□□□ 0.23
SFSWAP-210ENST00000541286 CYP2D7A0A087X1C5 515 aa16.51■□□□□ 0.23
SFSWAP-210ENST00000541286 CTDNEP1O95476 244 aa16.51■□□□□ 0.23
SFSWAP-210ENST00000541286 APPP05067 770 aa16.51■□□□□ 0.23
SFSWAP-210ENST00000541286 LCORLQ8N3X6 602 aa16.51■□□□□ 0.23
SFSWAP-210ENST00000541286 TDRD7Q8NHU6 1098 aaKnown RBP16.51■□□□□ 0.23
SFSWAP-210ENST00000541286 SMC2O95347 1197 aa16.5■□□□□ 0.23
SFSWAP-210ENST00000541286 CYP7A1P22680 504 aa16.5■□□□□ 0.23
SFSWAP-210ENST00000541286 TGFB2P61812 414 aa16.5■□□□□ 0.23
SFSWAP-210ENST00000541286 PTPN21Q16825 1174 aa16.5■□□□□ 0.23
SFSWAP-210ENST00000541286 ZNF804AQ7Z570 1209 aa16.5■□□□□ 0.23
SFSWAP-210ENST00000541286 FOXP2O15409 715 aa16.5■□□□□ 0.23
SFSWAP-210ENST00000541286 ZNF397Q8NF99 534 aaPredicted RBP16.5■□□□□ 0.23
SFSWAP-210ENST00000541286 CCDC93Q567U6 631 aa16.49■□□□□ 0.23
SFSWAP-210ENST00000541286 FAM177A1Q8N128 213 aaPredicted RBP16.49■□□□□ 0.23
SFSWAP-210ENST00000541286 CD2APQ9Y5K6 639 aa16.49■□□□□ 0.23
SFSWAP-210ENST00000541286 RNF113AO15541 343 aaKnown RBP16.49■□□□□ 0.23
SFSWAP-210ENST00000541286 MBD4O95243 580 aa16.49■□□□□ 0.23
SFSWAP-210ENST00000541286 EGFRP00533 1210 aa16.49■□□□□ 0.23
SFSWAP-210ENST00000541286 ZNF396Q96N95 335 aaPredicted RBP16.49■□□□□ 0.23
SFSWAP-210ENST00000541286 KIAA1551Q9HCM1 1747 aa16.49■□□□□ 0.23
SFSWAP-210ENST00000541286 PFKFB2O60825 505 aa16.49■□□□□ 0.23
SFSWAP-210ENST00000541286 UQCRFS1P1P0C7P4 283 aa16.49■□□□□ 0.23
SFSWAP-210ENST00000541286 STX1AQ16623 288 aa16.49■□□□□ 0.23
SFSWAP-210ENST00000541286 GNL3LQ9NVN8 582 aaKnown RBP16.49■□□□□ 0.23
SFSWAP-210ENST00000541286 PAXBP1Q9Y5B6 917 aa16.49■□□□□ 0.23
SFSWAP-210ENST00000541286 GOLGA8BA8MQT2 603 aa16.48■□□□□ 0.23
SFSWAP-210ENST00000541286 MARCKSP29966 332 aaPredicted RBP16.48■□□□□ 0.23
SFSWAP-210ENST00000541286 PDIA3P30101 505 aaKnown RBP16.48■□□□□ 0.23
SFSWAP-210ENST00000541286 GNL2Q13823 731 aaKnown RBP16.48■□□□□ 0.23
SFSWAP-210ENST00000541286 RBM26Q5T8P6 1007 aaKnown RBP16.48■□□□□ 0.23
SFSWAP-210ENST00000541286 KLF18A0A0U1RQI7 1052 aa16.48■□□□□ 0.23
SFSWAP-210ENST00000541286 TSGA10IPQ3SY00 556 aa16.48■□□□□ 0.23
SFSWAP-210ENST00000541286 GPAA1O43292 621 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 SEC31AO94979 1220 aaKnown RBP16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 ADD2P35612 726 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 PLA2G4DQ86XP0 818 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 C8orf76Q96K31 380 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 GJA3Q9Y6H8 435 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 TCRBV5S4A2TA0A5A2 114 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 HMGB1P09429 215 aaKnown RBP16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 DLK2Q6UY11 383 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 RALYLQ86SE5 291 aaKnown RBP16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 C10orf67Q8IYJ2 551 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 TAOK3Q9H2K8 898 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 CCDC69A6NI79 296 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 TRIM66O15016 1216 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 SKIDA1Q1XH10 827 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 HSP90AA4PQ58FG1 418 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 LRRC8AQ8IWT6 810 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 CEP57L1Q8IYX8 460 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 SNED1Q8TER0 1413 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 NSUN4Q96CB9 384 aaKnown RBP16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 ORC3Q9UBD5 711 aaPredicted RBP16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 PCDHA7Q9UN72 937 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 CLIC4Q9Y696 253 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 ADAMTSL1Q8N6G6 1762 aa16.47■□□□□ 0.23
SFSWAP-210ENST00000541286 LTBP1Q14766 1721 aa16.46■□□□□ 0.23
SFSWAP-210ENST00000541286 PSMD14O00487 310 aa16.46■□□□□ 0.23
SFSWAP-210ENST00000541286 SYT10Q6XYQ8 523 aa16.46■□□□□ 0.23
SFSWAP-210ENST00000541286 SYNE3Q6ZMZ3 975 aa16.46■□□□□ 0.23
SFSWAP-210ENST00000541286 DZIP1Q86YF9 867 aaKnown RBP16.46■□□□□ 0.23
SFSWAP-210ENST00000541286 CCDC34Q96HJ3 373 aa16.46■□□□□ 0.23
SFSWAP-210ENST00000541286 CALCOCO1Q9P1Z2 691 aa16.46■□□□□ 0.23
SFSWAP-210ENST00000541286 TTF2Q9UNY4 1162 aaKnown RBP16.46■□□□□ 0.23
SFSWAP-210ENST00000541286 ADD1P35611 737 aaKnown RBP16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 NDUFA8P51970 172 aa16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 RBM5P52756 815 aaKnown RBP eCLIP16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 GPR162Q16538 588 aa16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 ZMYM1Q5SVZ6 1142 aa16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 NAA16Q6N069 864 aaPredicted RBP16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 ANO10Q9NW15 660 aa16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 PRC1O43663 620 aa16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 FAM160A1Q05DH4 1040 aa16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 AIFM3Q96NN9 605 aa16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 LDHBP07195 334 aaKnown RBP16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 MAP3K12Q12852 859 aa16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 IQCB1Q15051 598 aa16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 RCOR1Q9UKL0 485 aa16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 LRRC37AA6NMS7 1700 aa16.45■□□□□ 0.22
SFSWAP-210ENST00000541286 IL1R1P14778 569 aa16.44■□□□□ 0.22
SFSWAP-210ENST00000541286 RAD51AP2Q09MP3 1159 aa16.44■□□□□ 0.22
SFSWAP-210ENST00000541286 IMMTQ16891 758 aaKnown RBP16.44■□□□□ 0.22
SFSWAP-210ENST00000541286 SMARCC2Q8TAQ2 1214 aa16.44■□□□□ 0.22
SFSWAP-210ENST00000541286 MRPS27Q92552 414 aaKnown RBP16.44■□□□□ 0.22
SFSWAP-210ENST00000541286 ASTN2O75129 1339 aaPredicted RBP16.44■□□□□ 0.22
SFSWAP-210ENST00000541286 CYP2D6P10635 497 aa16.44■□□□□ 0.22
SFSWAP-210ENST00000541286 CXCL9Q07325 125 aa16.44■□□□□ 0.22
SFSWAP-210ENST00000541286 ARHGAP29Q52LW3 1261 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 204 ms