RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 MNS1Q8NEH6 495 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 A0A087WWV3 80 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 TCRBV5S4A2TA0A5A2 114 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 KIF28PB7ZC32 967 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 F8W031 263 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-213ENST00000540338 KRBA2Q6ZNG9 492 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 FUCA2Q9BTY2 467 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.29□□□□□ -0.44
CLIP1-213ENST00000540338 VWA3AA6NCI4 1184 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 GRAPQ13588 217 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 HSP90AA4PQ58FG1 418 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 TMED8Q6PL24 325 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-213ENST00000540338 PIK3AP1Q6ZUJ8 805 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 MAPKAPK5Q8IW41 473 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 GRAPLQ8TC17 118 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-213ENST00000540338 FERMT2Q96AC1 680 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 TCP11L1Q9NUJ3 509 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 TRPC5Q9UL62 973 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-213ENST00000540338 PAXBP1Q9Y5B6 917 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 RIMBP2O15034 1052 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 POSTNQ15063 836 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 IQUBQ8NA54 791 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 SENP2Q9HC62 589 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 PRDX5P30044 214 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 FANCCQ00597 558 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 DPCR1Q3MIW9 517 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 MLKLQ8NB16 471 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 IPO7O95373 1038 aaKnown RBP12.28□□□□□ -0.44
CLIP1-213ENST00000540338 NAPAP54920 295 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 NR5A1Q13285 461 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 PICALMQ13492 652 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 CEP135Q66GS9 1140 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 TBC1D22AQ8WUA7 517 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 IMPACTQ9P2X3 320 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 C5P01031 1676 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 ZSCAN12O43309 604 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 HLA-DOAP06340 250 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 SERTAD1Q9UHV2 236 aa12.28□□□□□ -0.44
CLIP1-213ENST00000540338 PRPF3O43395 683 aaKnown RBP12.27□□□□□ -0.44
CLIP1-213ENST00000540338 CDC25BP30305 580 aa12.27□□□□□ -0.44
CLIP1-213ENST00000540338 LRMPQ12912 555 aa12.27□□□□□ -0.44
CLIP1-213ENST00000540338 SLC10A5Q5PT55 438 aa12.27□□□□□ -0.44
CLIP1-213ENST00000540338 ZNF622Q969S3 477 aaKnown RBP eCLIP12.27□□□□□ -0.441e-6■■□□□ 14.2
CLIP1-213ENST00000540338 NRBP1Q9UHY1 535 aa12.27□□□□□ -0.44
CLIP1-213ENST00000540338 SCG2P13521 617 aa12.27□□□□□ -0.44
CLIP1-213ENST00000540338 PNMA1Q8ND90 353 aa12.27□□□□□ -0.44
CLIP1-213ENST00000540338 PYCARDQ9ULZ3 195 aa12.27□□□□□ -0.44
CLIP1-213ENST00000540338 SALL1Q9NSC2 1324 aa12.27□□□□□ -0.45
CLIP1-213ENST00000540338 SERPINB2P05120 415 aa12.27□□□□□ -0.45
CLIP1-213ENST00000540338 MFSD14BQ5SR56 506 aa12.27□□□□□ -0.45
CLIP1-213ENST00000540338 CCAR2Q8N163 923 aaKnown RBP12.27□□□□□ -0.45
CLIP1-213ENST00000540338 ENAHQ8N8S7 591 aaPredicted RBP12.27□□□□□ -0.45
CLIP1-213ENST00000540338 KIAA1524Q8TCG1 905 aa12.27□□□□□ -0.45
CLIP1-213ENST00000540338 RRP36Q96EU6 259 aaKnown RBP12.27□□□□□ -0.45
CLIP1-213ENST00000540338 XPO4Q9C0E2 1151 aaKnown RBP12.27□□□□□ -0.45
CLIP1-213ENST00000540338 C6orf50Q9HD87 102 aa12.27□□□□□ -0.45
CLIP1-213ENST00000540338 RMND1Q9NWS8 449 aa12.27□□□□□ -0.45
CLIP1-213ENST00000540338 PARP1P09874 1014 aaKnown RBP12.27□□□□□ -0.45
CLIP1-213ENST00000540338 STAT6P42226 847 aa12.27□□□□□ -0.45
CLIP1-213ENST00000540338 SNW1Q13573 536 aaKnown RBP12.27□□□□□ -0.45
CLIP1-213ENST00000540338 CCDC96Q2M329 555 aa12.27□□□□□ -0.45
CLIP1-213ENST00000540338 CTR9Q6PD62 1173 aa12.27□□□□□ -0.45
CLIP1-213ENST00000540338 FBXO33Q7Z6M2 555 aa12.27□□□□□ -0.45
CLIP1-213ENST00000540338 SEPT12Q8IYM1 358 aa12.27□□□□□ -0.45
CLIP1-213ENST00000540338 RGS22Q8NE09 1264 aa12.27□□□□□ -0.45
CLIP1-213ENST00000540338 DCP1AQ9NPI6 582 aaPredicted RBP12.27□□□□□ -0.45
CLIP1-213ENST00000540338 NSUN4Q96CB9 384 aaKnown RBP12.26□□□□□ -0.45
CLIP1-213ENST00000540338 PCDHA5Q9Y5H7 936 aa12.26□□□□□ -0.45
CLIP1-213ENST00000540338 RRAGBQ5VZM2 374 aa12.26□□□□□ -0.45
CLIP1-213ENST00000540338 DTHD1Q6ZMT9 781 aa12.26□□□□□ -0.45
CLIP1-213ENST00000540338 FAM177A1Q8N128 213 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-213ENST00000540338 BBOX1O75936 387 aa12.26□□□□□ -0.45
CLIP1-213ENST00000540338 GNA11P29992 359 aa12.26□□□□□ -0.45
CLIP1-213ENST00000540338 LZTS2Q9BRK4 669 aa12.26□□□□□ -0.45
CLIP1-213ENST00000540338 COL18A1P39060 1754 aa12.26□□□□□ -0.45
CLIP1-213ENST00000540338 USP17L8P0C7I0 530 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 U2AF2P26368 475 aaKnown RBP eCLIP12.25□□□□□ -0.451e-6■■■■□ 26
CLIP1-213ENST00000540338 SARM1Q6SZW1 724 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 RBM43Q6ZSC3 357 aaKnown RBP12.25□□□□□ -0.45
CLIP1-213ENST00000540338 ENGASEQ8NFI3 743 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 RAB34Q9BZG1 259 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 GJD4Q96KN9 370 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-213ENST00000540338 PDCL3Q9H2J4 239 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 PCDHB6Q9Y5E3 794 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 ARFGEF2Q9Y6D5 1785 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 MYO1BO43795 1136 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 ADRA2BP18089 450 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 BTDP43251 543 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 TMEM266Q2M3C6 531 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 RESP18Q5W5W9 173 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 CTAGE1Q96RT6 745 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 PKD1L3Q7Z443 1732 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 DISP2A7MBM2 1401 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 GUCY1A2P33402 732 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 NFIXQ14938 502 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 DIXDC1Q155Q3 683 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 LRRC8AQ8IWT6 810 aa12.25□□□□□ -0.45
CLIP1-213ENST00000540338 QTRT2Q9H974 415 aaKnown RBP12.25□□□□□ -0.45
CLIP1-213ENST00000540338 ZNF219Q9P2Y4 722 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-213ENST00000540338 PARP3Q9Y6F1 533 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms