RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 KCNH4Q9UQ05 1017 aa18.87■□□□□ 0.61
RPAIN-206ENST00000539417 TESPA1A2RU30 521 aaPredicted RBP18.86■□□□□ 0.61
RPAIN-206ENST00000539417 MINDY4BA8MYZ0 360 aa18.86■□□□□ 0.61
RPAIN-206ENST00000539417 GH2P01242 217 aa18.86■□□□□ 0.61
RPAIN-206ENST00000539417 HSPA8P11142 646 aaKnown RBP18.86■□□□□ 0.61
RPAIN-206ENST00000539417 GNAT2P19087 354 aa18.86■□□□□ 0.61
RPAIN-206ENST00000539417 GUCY1A2P33402 732 aa18.86■□□□□ 0.61
RPAIN-206ENST00000539417 TDO2P48775 406 aa18.86■□□□□ 0.61
RPAIN-206ENST00000539417 SBK1Q52WX2 424 aa18.86■□□□□ 0.61
RPAIN-206ENST00000539417 GIMAP6Q6P9H5 292 aa18.86■□□□□ 0.61
RPAIN-206ENST00000539417 IFNL1Q8IU54 200 aa18.86■□□□□ 0.61
RPAIN-206ENST00000539417 ZBTB21Q9ULJ3 1066 aa18.86■□□□□ 0.61
RPAIN-206ENST00000539417 CCL15-CCL14A0A0B4J2E2 113 aa18.85■□□□□ 0.61
RPAIN-206ENST00000539417 CCL15Q16663 113 aa18.85■□□□□ 0.61
RPAIN-206ENST00000539417 CERKLQ49MI3 558 aaPredicted RBP18.85■□□□□ 0.61
RPAIN-206ENST00000539417 ERICH6BQ5W0A0 696 aa18.85■□□□□ 0.61
RPAIN-206ENST00000539417 DIAPH3Q9NSV4 1193 aa18.85■□□□□ 0.61
RPAIN-206ENST00000539417 ARPP21Q9UBL0 812 aaPredicted RBP18.85■□□□□ 0.61
RPAIN-206ENST00000539417 TACC3Q9Y6A5 838 aa18.85■□□□□ 0.61
RPAIN-206ENST00000539417 CCDC171Q6TFL3 1326 aa18.85■□□□□ 0.61
RPAIN-206ENST00000539417 PTPRFP10586 1907 aa18.85■□□□□ 0.61
RPAIN-206ENST00000539417 TRIM75PA6NK02 468 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 HSPD1P10809 573 aaKnown RBP18.84■□□□□ 0.61
RPAIN-206ENST00000539417 CDK8P49336 464 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 GTF2A2P52657 109 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 SREBF2Q12772 1141 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 C16orf86Q6ZW13 317 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 TICAM2Q86XR7 235 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 FAM43AQ8N2R8 423 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 DDRGK1Q96HY6 314 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 TBC1D8O95759 1140 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 AKR1B1P15121 316 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 CHMLP26374 656 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 LBX1P52954 281 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 SPP2Q13103 211 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 SNAPC2Q13487 334 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 INCENPQ9NQS7 918 aa18.84■□□□□ 0.61
RPAIN-206ENST00000539417 USP17L5A8MUK1 530 aa18.83■□□□□ 0.6
RPAIN-206ENST00000539417 BTBD19C9JJ37 291 aa18.83■□□□□ 0.6
RPAIN-206ENST00000539417 ABCB5Q2M3G0 1257 aa18.83■□□□□ 0.6
RPAIN-206ENST00000539417 CLEC10AQ8IUN9 316 aa18.83■□□□□ 0.6
RPAIN-206ENST00000539417 REM2Q8IYK8 340 aaPredicted RBP18.83■□□□□ 0.6
RPAIN-206ENST00000539417 BEGAINQ9BUH8 593 aa18.83■□□□□ 0.6
RPAIN-206ENST00000539417 NAPBQ9H115 298 aa18.83■□□□□ 0.6
RPAIN-206ENST00000539417 MYH8P13535 1937 aa18.82■□□□□ 0.6
RPAIN-206ENST00000539417 ROBO3Q96MS0 1386 aa18.82■□□□□ 0.6
RPAIN-206ENST00000539417 A0A0G2JLL6 359 aaPredicted RBP18.82■□□□□ 0.6
RPAIN-206ENST00000539417 ASNSP08243 561 aa18.82■□□□□ 0.6
RPAIN-206ENST00000539417 SEPT2Q15019 361 aa18.82■□□□□ 0.6
RPAIN-206ENST00000539417 GPAT2Q6NUI2 795 aa18.82■□□□□ 0.6
RPAIN-206ENST00000539417 PRRT2Q7Z6L0 340 aaPredicted RBP18.82■□□□□ 0.6
RPAIN-206ENST00000539417 SWAP70Q9UH65 585 aa18.82■□□□□ 0.6
RPAIN-206ENST00000539417 CXCL11O14625 94 aa18.81■□□□□ 0.6
RPAIN-206ENST00000539417 PRDM1O75626 825 aa18.81■□□□□ 0.6
RPAIN-206ENST00000539417 FGAP02671 866 aa18.81■□□□□ 0.6
RPAIN-206ENST00000539417 CETPP11597 493 aa18.81■□□□□ 0.6
RPAIN-206ENST00000539417 INHBEP58166 350 aa18.81■□□□□ 0.6
RPAIN-206ENST00000539417 CTDSPL2Q05D32 466 aa18.81■□□□□ 0.6
RPAIN-206ENST00000539417 AMOTL1Q8IY63 956 aa18.81■□□□□ 0.6
RPAIN-206ENST00000539417 ZNF280CQ8ND82 737 aa18.81■□□□□ 0.6
RPAIN-206ENST00000539417 ACER1Q8TDN7 264 aa18.81■□□□□ 0.6
RPAIN-206ENST00000539417 NACAP1Q9BZK3 213 aa18.81■□□□□ 0.6
RPAIN-206ENST00000539417 HIP1O00291 1037 aa18.8■□□□□ 0.6
RPAIN-206ENST00000539417 MPHOSPH10O00566 681 aaKnown RBP18.8■□□□□ 0.6
RPAIN-206ENST00000539417 RASA1P20936 1047 aa18.8■□□□□ 0.6
RPAIN-206ENST00000539417 CTCFP49711 727 aaPredicted RBP18.8■□□□□ 0.6
RPAIN-206ENST00000539417 PPARAQ07869 468 aa18.8■□□□□ 0.6
RPAIN-206ENST00000539417 RAB3GAP1Q15042 981 aa18.8■□□□□ 0.6
RPAIN-206ENST00000539417 ALX1Q15699 326 aa18.8■□□□□ 0.6
RPAIN-206ENST00000539417 WDR18Q9BV38 432 aa18.8■□□□□ 0.6
RPAIN-206ENST00000539417 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.8■□□□□ 0.6
RPAIN-206ENST00000539417 SAGE1Q9NXZ1 904 aa18.8■□□□□ 0.6
RPAIN-206ENST00000539417 HMGCS2P54868 508 aa18.79■□□□□ 0.6
RPAIN-206ENST00000539417 MTMR2Q13614 643 aa18.79■□□□□ 0.6
RPAIN-206ENST00000539417 GADL1Q6ZQY3 521 aa18.79■□□□□ 0.6
RPAIN-206ENST00000539417 SIAH1Q8IUQ4 282 aa18.79■□□□□ 0.6
RPAIN-206ENST00000539417 NKX2-3Q8TAU0 364 aa18.79■□□□□ 0.6
RPAIN-206ENST00000539417 NBPF3Q9H094 633 aa18.79■□□□□ 0.6
RPAIN-206ENST00000539417 A0A1W2PRG0 241 aa18.78■□□□□ 0.6
RPAIN-206ENST00000539417 CA12O43570 354 aa18.78■□□□□ 0.6
RPAIN-206ENST00000539417 HAND2P61296 217 aa18.78■□□□□ 0.6
RPAIN-206ENST00000539417 CRHR2Q13324 411 aa18.78■□□□□ 0.6
RPAIN-206ENST00000539417 BMP2KLQ5H9B9 411 aa18.78■□□□□ 0.6
RPAIN-206ENST00000539417 TREML2Q5T2D2 321 aa18.78■□□□□ 0.6
RPAIN-206ENST00000539417 LOC285556D6RIA3 1793 aa18.78■□□□□ 0.6
RPAIN-206ENST00000539417 PTH1RQ03431 593 aa18.77■□□□□ 0.6
RPAIN-206ENST00000539417 ZYXQ15942 572 aaKnown RBP18.77■□□□□ 0.6
RPAIN-206ENST00000539417 GINM1Q9NU53 330 aa18.77■□□□□ 0.6
RPAIN-206ENST00000539417 GREB1LQ9C091 1923 aaPredicted RBP18.77■□□□□ 0.6
RPAIN-206ENST00000539417 CASP8AP2Q9UKL3 1982 aa18.77■□□□□ 0.59
RPAIN-206ENST00000539417 PDHXO00330 501 aa18.77■□□□□ 0.59
RPAIN-206ENST00000539417 BACE1P56817 501 aa18.77■□□□□ 0.59
RPAIN-206ENST00000539417 ANKRD23Q86SG2 305 aa18.77■□□□□ 0.59
RPAIN-206ENST00000539417 MKNK2Q9HBH9 465 aa18.77■□□□□ 0.59
RPAIN-206ENST00000539417 AS3MTQ9HBK9 375 aa18.77■□□□□ 0.59
RPAIN-206ENST00000539417 CABP5Q9NP86 173 aa18.77■□□□□ 0.59
RPAIN-206ENST00000539417 EMILIN3Q9NT22 766 aa18.77■□□□□ 0.59
RPAIN-206ENST00000539417 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.77■□□□□ 0.59
RPAIN-206ENST00000539417 SGSM2O43147 1006 aa18.76■□□□□ 0.59
RPAIN-206ENST00000539417 CAP1Q01518 475 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms