RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.04□□□□□ -0.64
COL4A6-208ENST00000538570 CWF19L2Q2TBE0 894 aaKnown RBP11.03□□□□□ -0.64
COL4A6-208ENST00000538570 SRGAP1Q7Z6B7 1085 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 PRPF31Q8WWY3 499 aaKnown RBP11.03□□□□□ -0.64
COL4A6-208ENST00000538570 BICC1Q9H694 974 aaKnown RBP11.03□□□□□ -0.64
COL4A6-208ENST00000538570 DENND2AQ9ULE3 1009 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 SATB2Q9UPW6 733 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 RIPOR2Q9Y4F9 1068 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 POLR2DO15514 142 aaKnown RBP11.03□□□□□ -0.64
COL4A6-208ENST00000538570 PROCA1Q8NCQ7 364 aaPredicted RBP11.03□□□□□ -0.64
COL4A6-208ENST00000538570 RAPGEF6Q8TEU7 1601 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 PPIP5K1Q6PFW1 1433 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 GPCPD1Q9NPB8 672 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 CTTNBP2NLQ9P2B4 639 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 PPFIA1Q13136 1202 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 TRIM68Q6AZZ1 485 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 CADPS2Q86UW7 1296 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 KLHL7Q8IXQ5 586 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 EYA3Q99504 573 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 CBX8Q9HC52 389 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 MAPK8IP1Q9UQF2 711 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 ASXL2Q76L83 1435 aa11.03□□□□□ -0.64
COL4A6-208ENST00000538570 B4E1Z4 1266 aa11.02□□□□□ -0.64
COL4A6-208ENST00000538570 CLEC11AQ9Y240 323 aa11.02□□□□□ -0.64
COL4A6-208ENST00000538570 SLC27A2O14975 620 aa11.02□□□□□ -0.64
COL4A6-208ENST00000538570 KIF1CO43896 1103 aaKnown RBP11.02□□□□□ -0.64
COL4A6-208ENST00000538570 LIG3P49916 1009 aa11.02□□□□□ -0.64
COL4A6-208ENST00000538570 MAP3K7CLP57077 242 aa11.02□□□□□ -0.64
COL4A6-208ENST00000538570 EIF4A2Q14240 407 aaKnown RBP11.02□□□□□ -0.64
COL4A6-208ENST00000538570 CFAP221Q4G0U5 840 aa11.02□□□□□ -0.64
COL4A6-208ENST00000538570 BEND3Q5T5X7 828 aa11.02□□□□□ -0.64
COL4A6-208ENST00000538570 CCDC170Q8IYT3 715 aa11.02□□□□□ -0.64
COL4A6-208ENST00000538570 GOLGA5Q8TBA6 731 aa11.02□□□□□ -0.64
COL4A6-208ENST00000538570 NSFL1CQ9UNZ2 370 aaKnown RBP11.02□□□□□ -0.64
COL4A6-208ENST00000538570 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.02□□□□□ -0.64
COL4A6-208ENST00000538570 UGGT2Q9NYU1 1516 aa11.02□□□□□ -0.64
COL4A6-208ENST00000538570 NUP153P49790 1475 aaKnown RBP11.02□□□□□ -0.65
COL4A6-208ENST00000538570 TXNDC9O14530 226 aa11.02□□□□□ -0.65
COL4A6-208ENST00000538570 HGSO14964 777 aaPredicted RBP11.02□□□□□ -0.65
COL4A6-208ENST00000538570 RNF8O76064 485 aa11.02□□□□□ -0.65
COL4A6-208ENST00000538570 ARMC9Q7Z3E5 817 aa11.02□□□□□ -0.65
COL4A6-208ENST00000538570 RAB3IPQ96QF0 476 aaPredicted RBP11.02□□□□□ -0.65
COL4A6-208ENST00000538570 ZBTB40Q9NUA8 1239 aa11.02□□□□□ -0.65
COL4A6-208ENST00000538570 SAP30BPQ9UHR5 308 aaKnown RBP11.02□□□□□ -0.65
COL4A6-208ENST00000538570 ARHGAP6O43182 974 aa11.02□□□□□ -0.65
COL4A6-208ENST00000538570 MTHFSDQ2M296 383 aaKnown RBP11.02□□□□□ -0.65
COL4A6-208ENST00000538570 GLT8D2Q9H1C3 349 aa11.02□□□□□ -0.65
COL4A6-208ENST00000538570 DUOX2Q9NRD8 1548 aa11.02□□□□□ -0.65
COL4A6-208ENST00000538570 ARHGEF35A5YM69 484 aa11.02□□□□□ -0.65
COL4A6-208ENST00000538570 DKC1O60832 514 aaKnown RBP eCLIP11.02□□□□□ -0.65
COL4A6-208ENST00000538570 MAP3K5Q99683 1374 aa11.02□□□□□ -0.65
COL4A6-208ENST00000538570 RIMBP2O15034 1052 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 SLC8A1P32418 973 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 MAGEA1P43355 309 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 TTC38Q5R3I4 469 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 WDR70Q9NW82 654 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 FAF1Q9UNN5 650 aaPredicted RBP11.01□□□□□ -0.65
COL4A6-208ENST00000538570 VAMP4O75379 141 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 CPA1P15085 419 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 TXKP42681 527 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 COG7P83436 770 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 MAIP1Q8WWC4 291 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 DDX21Q9NR30 783 aaKnown RBP eCLIP11.01□□□□□ -0.65
COL4A6-208ENST00000538570 A2MP01023 1474 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 KRT15P19012 456 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 ZKSCAN8Q15776 578 aaPredicted RBP11.01□□□□□ -0.65
COL4A6-208ENST00000538570 RBM26Q5T8P6 1007 aaKnown RBP11.01□□□□□ -0.65
COL4A6-208ENST00000538570 PARP2Q9UGN5 583 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 USTQ9Y2C2 406 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 MSH6P52701 1360 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 FLOT1O75955 427 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 RPS6KA1Q15418 735 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 DENND2CQ68D51 928 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 LCA5Q86VQ0 697 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 CDAN1Q8IWY9 1227 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 TEX11Q8IYF3 940 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 CCDC105Q8IYK2 499 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 BCAP29Q9UHQ4 241 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 AFG3L2Q9Y4W6 797 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 TMED1Q13445 227 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 MUM1Q2TAK8 710 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 PTPRKQ15262 1439 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 BCRP11274 1271 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 GABPAQ06546 454 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 PPP2R5DQ14738 602 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 DCUN1D2Q6PH85 259 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 CCDC125Q86Z20 511 aa11.01□□□□□ -0.65
COL4A6-208ENST00000538570 RASSF2P50749 326 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 LONRF3Q496Y0 759 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 NCAPH2Q6IBW4 605 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 FCHSD1Q86WN1 690 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 TAB2Q9NYJ8 693 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 PPFIA4O75335 1185 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 ZNF202O95125 648 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 SFMBT2Q5VUG0 894 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 SND1Q7KZF4 910 aaKnown RBP eCLIP11□□□□□ -0.65
COL4A6-208ENST00000538570 ANGEL1Q9UNK9 670 aaKnown RBP11□□□□□ -0.65
COL4A6-208ENST00000538570 TNNQ9UQP3 1299 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 STK38LQ9Y2H1 464 aa11□□□□□ -0.65
COL4A6-208ENST00000538570 KLHL30Q0D2K2 578 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms