RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 TMEM87BQ96K49 555 aa16.74■□□□□ 0.27
TRIM3-212ENST00000533064 TTC14Q96N46 770 aa16.74■□□□□ 0.27
TRIM3-212ENST00000533064 MTA3Q9BTC8 594 aa16.74■□□□□ 0.27
TRIM3-212ENST00000533064 ALDH8A1Q9H2A2 487 aaPredicted RBP16.74■□□□□ 0.27
TRIM3-212ENST00000533064 MYH6P13533 1939 aa16.74■□□□□ 0.27
TRIM3-212ENST00000533064 DOCK1Q14185 1865 aa16.73■□□□□ 0.27
TRIM3-212ENST00000533064 TBC1D12O60347 775 aa16.73■□□□□ 0.27
TRIM3-212ENST00000533064 SHMT1P34896 483 aa16.73■□□□□ 0.27
TRIM3-212ENST00000533064 TFAP4Q01664 338 aa16.73■□□□□ 0.27
TRIM3-212ENST00000533064 CCDC178Q5BJE1 867 aa16.73■□□□□ 0.27
TRIM3-212ENST00000533064 FAM47AQ5JRC9 791 aa16.73■□□□□ 0.27
TRIM3-212ENST00000533064 DCAF15Q66K64 600 aa16.73■□□□□ 0.27
TRIM3-212ENST00000533064 KRT26Q7Z3Y9 468 aa16.73■□□□□ 0.27
TRIM3-212ENST00000533064 ZNF526Q8TF50 670 aaPredicted RBP16.73■□□□□ 0.27
TRIM3-212ENST00000533064 CCDC17Q96LX7 622 aa16.73■□□□□ 0.27
TRIM3-212ENST00000533064 TEPSINQ96N21 525 aa16.73■□□□□ 0.27
TRIM3-212ENST00000533064 LRRC2Q9BYS8 371 aa16.73■□□□□ 0.27
TRIM3-212ENST00000533064 TRPM7Q96QT4 1865 aa16.73■□□□□ 0.27
TRIM3-212ENST00000533064 FAM196BA6NMK8 535 aa16.72■□□□□ 0.27
TRIM3-212ENST00000533064 IFIT3O14879 490 aaKnown RBP16.72■□□□□ 0.27
TRIM3-212ENST00000533064 AK2P54819 239 aa16.72■□□□□ 0.27
TRIM3-212ENST00000533064 SUPT20HL1Q3ZLR7 823 aa16.72■□□□□ 0.27
TRIM3-212ENST00000533064 CERKLQ49MI3 558 aaPredicted RBP16.72■□□□□ 0.27
TRIM3-212ENST00000533064 PGAP2Q9UHJ9 254 aa16.72■□□□□ 0.27
TRIM3-212ENST00000533064 ANTXR2P58335 489 aa16.72■□□□□ 0.27
TRIM3-212ENST00000533064 COL9A3Q14050 684 aaPredicted RBP16.72■□□□□ 0.27
TRIM3-212ENST00000533064 TMEM67Q5HYA8 995 aa16.72■□□□□ 0.27
TRIM3-212ENST00000533064 MIGA2Q7L4E1 593 aa16.72■□□□□ 0.27
TRIM3-212ENST00000533064 DNAJC18Q9H819 358 aa16.72■□□□□ 0.27
TRIM3-212ENST00000533064 ANGEL1Q9UNK9 670 aaKnown RBP16.72■□□□□ 0.27
TRIM3-212ENST00000533064 MPHOSPH10O00566 681 aaKnown RBP16.71■□□□□ 0.27
TRIM3-212ENST00000533064 WTAPQ15007 396 aa16.71■□□□□ 0.27
TRIM3-212ENST00000533064 NBPF12Q5TAG4 269 aaPredicted RBP16.71■□□□□ 0.27
TRIM3-212ENST00000533064 TATDN1Q6P1N9 297 aa16.71■□□□□ 0.27
TRIM3-212ENST00000533064 NOL8Q76FK4 1167 aaKnown RBP16.71■□□□□ 0.27
TRIM3-212ENST00000533064 CDC37L1Q7L3B6 337 aa16.71■□□□□ 0.27
TRIM3-212ENST00000533064 CDAN1Q8IWY9 1227 aa16.71■□□□□ 0.27
TRIM3-212ENST00000533064 TMTC2Q8N394 836 aa16.71■□□□□ 0.27
TRIM3-212ENST00000533064 FBXL16Q8N461 479 aa16.71■□□□□ 0.27
TRIM3-212ENST00000533064 BRF1Q92994 677 aa16.71■□□□□ 0.27
TRIM3-212ENST00000533064 ZSCAN10Q96SZ4 725 aaPredicted RBP16.71■□□□□ 0.27
TRIM3-212ENST00000533064 ZKSCAN3Q9BRR0 538 aa16.71■□□□□ 0.27
TRIM3-212ENST00000533064 CABP5Q9NP86 173 aa16.71■□□□□ 0.27
TRIM3-212ENST00000533064 K7ELQ4 463 aaPredicted RBP16.7■□□□□ 0.26
TRIM3-212ENST00000533064 CD2BP2O95400 341 aaKnown RBP16.7■□□□□ 0.26
TRIM3-212ENST00000533064 NF2P35240 595 aa16.7■□□□□ 0.26
TRIM3-212ENST00000533064 NEDD1Q8NHV4 660 aa16.7■□□□□ 0.26
TRIM3-212ENST00000533064 NMRK2Q9NPI5 230 aa16.7■□□□□ 0.26
TRIM3-212ENST00000533064 TNKSO95271 1327 aa16.7■□□□□ 0.26
TRIM3-212ENST00000533064 ADM5C9JUS6 153 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 SH2B2O14492 632 aaPredicted RBP16.69■□□□□ 0.26
TRIM3-212ENST00000533064 LIFRP42702 1097 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 MAP3K10Q02779 954 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 TOB2Q14106 344 aaPredicted RBP16.69■□□□□ 0.26
TRIM3-212ENST00000533064 PPP4R3BQ5MIZ7 849 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 NFXL1Q6ZNB6 911 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 LDHDQ86WU2 507 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 NKX2-3Q8TAU0 364 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 IGDCC4Q8TDY8 1250 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 PLIN4Q96Q06 1357 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 ZNF341Q9BYN7 854 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 AGXT2Q9BYV1 514 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 OTOFQ9HC10 1997 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 TCP11L1Q9NUJ3 509 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 LIMCH1Q9UPQ0 1083 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 CCDC69A6NI79 296 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 SLURP2P0DP57 97 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 AKR1B1P15121 316 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 ABCB5Q2M3G0 1257 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 IFIT1BQ5T764 474 aaKnown RBP16.69■□□□□ 0.26
TRIM3-212ENST00000533064 PRAMEF18Q5VWM3 479 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 USP48Q86UV5 1035 aa16.69■□□□□ 0.26
TRIM3-212ENST00000533064 ZSCAN31Q96LW9 406 aaPredicted RBP16.69■□□□□ 0.26
TRIM3-212ENST00000533064 NAP1L2Q9ULW6 460 aaPredicted RBP16.69■□□□□ 0.26
TRIM3-212ENST00000533064 GDF11O95390 407 aa16.68■□□□□ 0.26
TRIM3-212ENST00000533064 SYNE3Q6ZMZ3 975 aa16.68■□□□□ 0.26
TRIM3-212ENST00000533064 TMEM179Q6ZVK1 233 aa16.68■□□□□ 0.26
TRIM3-212ENST00000533064 ENAHQ8N8S7 591 aaPredicted RBP16.68■□□□□ 0.26
TRIM3-212ENST00000533064 LY9Q9HBG7 655 aa16.68■□□□□ 0.26
TRIM3-212ENST00000533064 GPBP1L1Q9HC44 474 aaPredicted RBP16.68■□□□□ 0.26
TRIM3-212ENST00000533064 PPP1R12BO60237 982 aaPredicted RBP16.67■□□□□ 0.26
TRIM3-212ENST00000533064 NMT2O60551 498 aa16.67■□□□□ 0.26
TRIM3-212ENST00000533064 APOBRQ0VD83 1088 aa16.67■□□□□ 0.26
TRIM3-212ENST00000533064 DGKHQ86XP1 1220 aa16.67■□□□□ 0.26
TRIM3-212ENST00000533064 LARP6Q9BRS8 491 aaKnown RBP16.67■□□□□ 0.26
TRIM3-212ENST00000533064 GLIS2Q9BZE0 524 aaPredicted RBP16.67■□□□□ 0.26
TRIM3-212ENST00000533064 SH2B1Q9NRF2 756 aaPredicted RBP16.67■□□□□ 0.26
TRIM3-212ENST00000533064 STX8Q9UNK0 236 aa16.67■□□□□ 0.26
TRIM3-212ENST00000533064 POTEIP0CG38 1075 aa16.66■□□□□ 0.26
TRIM3-212ENST00000533064 POTEJP0CG39 1038 aa16.66■□□□□ 0.26
TRIM3-212ENST00000533064 SEC23AQ15436 765 aa16.66■□□□□ 0.26
TRIM3-212ENST00000533064 SGMS1Q86VZ5 419 aa16.66■□□□□ 0.26
TRIM3-212ENST00000533064 CDCA5Q96FF9 252 aa16.66■□□□□ 0.26
TRIM3-212ENST00000533064 BAZ2BQ9UIF8 2168 aaKnown RBP16.66■□□□□ 0.26
TRIM3-212ENST00000533064 PHIPQ8WWQ0 1821 aa16.66■□□□□ 0.26
TRIM3-212ENST00000533064 KLF18A0A0U1RQI7 1052 aa16.65■□□□□ 0.26
TRIM3-212ENST00000533064 HSP90AA1P07900 732 aaKnown RBP16.65■□□□□ 0.26
TRIM3-212ENST00000533064 CAP2P40123 477 aa16.65■□□□□ 0.26
TRIM3-212ENST00000533064 RAB3GAP1Q15042 981 aa16.65■□□□□ 0.26
TRIM3-212ENST00000533064 MAP1SQ66K74 1059 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms