RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SDSP20132 328 aa23.81■■□□□ 1.4
CPSF1-209ENST00000532725 SBK1Q52WX2 424 aa23.81■■□□□ 1.4
CPSF1-209ENST00000532725 TTC22Q5TAA0 569 aa23.81■■□□□ 1.4
CPSF1-209ENST00000532725 DYNLL2Q96FJ2 89 aa23.81■■□□□ 1.4
CPSF1-209ENST00000532725 FAM227BQ96M60 508 aa23.81■■□□□ 1.4
CPSF1-209ENST00000532725 R3HDMLQ9H3Y0 253 aa23.81■■□□□ 1.4
CPSF1-209ENST00000532725 DDX60LQ5H9U9 1706 aaKnown RBP23.81■■□□□ 1.4
CPSF1-209ENST00000532725 BTBD19C9JJ37 291 aa23.8■■□□□ 1.4
CPSF1-209ENST00000532725 GDF11O95390 407 aa23.8■■□□□ 1.4
CPSF1-209ENST00000532725 CERKLQ49MI3 558 aaPredicted RBP23.8■■□□□ 1.4
CPSF1-209ENST00000532725 CCDC129Q6ZRS4 1044 aa23.8■■□□□ 1.4
CPSF1-209ENST00000532725 IFNL3Q8IZI9 196 aa23.8■■□□□ 1.4
CPSF1-209ENST00000532725 FAM43AQ8N2R8 423 aa23.8■■□□□ 1.4
CPSF1-209ENST00000532725 EPB41L4AQ9HCS5 686 aaPredicted RBP23.8■■□□□ 1.4
CPSF1-209ENST00000532725 A0A0D9SFI3 127 aa23.79■■□□□ 1.4
CPSF1-209ENST00000532725 A0A0G2JLL6 359 aaPredicted RBP23.79■■□□□ 1.4
CPSF1-209ENST00000532725 APPP05067 770 aa23.79■■□□□ 1.4
CPSF1-209ENST00000532725 GSPT1P15170 499 aaKnown RBP23.79■■□□□ 1.4
CPSF1-209ENST00000532725 MCMDC2Q4G0Z9 681 aa23.79■■□□□ 1.4
CPSF1-209ENST00000532725 COL13A1Q5TAT6 717 aaPredicted RBP23.79■■□□□ 1.4
CPSF1-209ENST00000532725 PRRT2Q7Z6L0 340 aaPredicted RBP23.79■■□□□ 1.4
CPSF1-209ENST00000532725 AMOTL1Q8IY63 956 aa23.79■■□□□ 1.4
CPSF1-209ENST00000532725 WDR18Q9BV38 432 aa23.79■■□□□ 1.4
CPSF1-209ENST00000532725 TBC1D2Q9BYX2 928 aa23.79■■□□□ 1.4
CPSF1-209ENST00000532725 NAV1Q8NEY1 1877 aa23.79■■□□□ 1.4
CPSF1-209ENST00000532725 TRIM75PA6NK02 468 aa23.78■■□□□ 1.4
CPSF1-209ENST00000532725 FOXP2O15409 715 aa23.78■■□□□ 1.4
CPSF1-209ENST00000532725 SPP2Q13103 211 aa23.78■■□□□ 1.4
CPSF1-209ENST00000532725 NMIQ13287 307 aaPredicted RBP23.78■■□□□ 1.4
CPSF1-209ENST00000532725 SLC44A5Q8NCS7 719 aa23.78■■□□□ 1.4
CPSF1-209ENST00000532725 ZNF280CQ8ND82 737 aa23.78■■□□□ 1.4
CPSF1-209ENST00000532725 ARPP21Q9UBL0 812 aaPredicted RBP23.78■■□□□ 1.4
CPSF1-209ENST00000532725 SWAP70Q9UH65 585 aa23.78■■□□□ 1.4
CPSF1-209ENST00000532725 ZBTB21Q9ULJ3 1066 aa23.78■■□□□ 1.4
CPSF1-209ENST00000532725 DOCK1Q14185 1865 aa23.78■■□□□ 1.4
CPSF1-209ENST00000532725 BAZ2AQ9UIF9 1905 aaKnown RBP23.78■■□□□ 1.4
CPSF1-209ENST00000532725 GH2P01242 217 aa23.77■■□□□ 1.4
CPSF1-209ENST00000532725 CDK8P49336 464 aa23.77■■□□□ 1.4
CPSF1-209ENST00000532725 GPAT2Q6NUI2 795 aa23.77■■□□□ 1.4
CPSF1-209ENST00000532725 C16orf86Q6ZW13 317 aa23.77■■□□□ 1.4
CPSF1-209ENST00000532725 CCDC136Q96JN2 1154 aa23.77■■□□□ 1.4
CPSF1-209ENST00000532725 ZCCHC17Q9NP64 241 aaKnown RBP23.77■■□□□ 1.4
CPSF1-209ENST00000532725 ABCB5Q2M3G0 1257 aa23.76■■□□□ 1.39
CPSF1-209ENST00000532725 NOM1Q5C9Z4 860 aaKnown RBP23.76■■□□□ 1.39
CPSF1-209ENST00000532725 FASTKD5Q7L8L6 764 aaKnown RBP23.76■■□□□ 1.39
CPSF1-209ENST00000532725 ANKRD23Q86SG2 305 aa23.76■■□□□ 1.39
CPSF1-209ENST00000532725 NACAP1Q9BZK3 213 aa23.76■■□□□ 1.39
CPSF1-209ENST00000532725 AS3MTQ9HBK9 375 aa23.76■■□□□ 1.39
CPSF1-209ENST00000532725 PHIPQ8WWQ0 1821 aa23.75■■□□□ 1.39
CPSF1-209ENST00000532725 MINDY4BA8MYZ0 360 aa23.75■■□□□ 1.39
CPSF1-209ENST00000532725 GUCY1A2P33402 732 aa23.75■■□□□ 1.39
CPSF1-209ENST00000532725 TDO2P48775 406 aa23.75■■□□□ 1.39
CPSF1-209ENST00000532725 CRHR2Q13324 411 aa23.75■■□□□ 1.39
CPSF1-209ENST00000532725 VPS53Q5VIR6 699 aa23.75■■□□□ 1.39
CPSF1-209ENST00000532725 GPR25O00155 361 aa23.74■■□□□ 1.39
CPSF1-209ENST00000532725 HIP1O00291 1037 aa23.74■■□□□ 1.39
CPSF1-209ENST00000532725 SH3D19Q5HYK7 790 aa23.74■■□□□ 1.39
CPSF1-209ENST00000532725 ZNF589Q86UQ0 364 aaPredicted RBP23.74■■□□□ 1.39
CPSF1-209ENST00000532725 CABP5Q9NP86 173 aa23.74■■□□□ 1.39
CPSF1-209ENST00000532725 PDHXO00330 501 aa23.73■■□□□ 1.39
CPSF1-209ENST00000532725 BACE1P56817 501 aa23.73■■□□□ 1.39
CPSF1-209ENST00000532725 TAF1CQ15572 869 aaPredicted RBP23.73■■□□□ 1.39
CPSF1-209ENST00000532725 ALX1Q15699 326 aa23.73■■□□□ 1.39
CPSF1-209ENST00000532725 ERICH6BQ5W0A0 696 aa23.73■■□□□ 1.39
CPSF1-209ENST00000532725 CWC27Q6UX04 472 aaKnown RBP23.73■■□□□ 1.39
CPSF1-209ENST00000532725 RAB3GAP1Q15042 981 aa23.72■■□□□ 1.39
CPSF1-209ENST00000532725 SKAP1Q86WV1 359 aa23.72■■□□□ 1.39
CPSF1-209ENST00000532725 ZNF296Q8WUU4 475 aaPredicted RBP23.72■■□□□ 1.39
CPSF1-209ENST00000532725 CCDC17Q96LX7 622 aa23.72■■□□□ 1.39
CPSF1-209ENST00000532725 NAPBQ9H115 298 aa23.72■■□□□ 1.39
CPSF1-209ENST00000532725 ZFYVE28Q9HCC9 887 aa23.72■■□□□ 1.39
CPSF1-209ENST00000532725 DIAPH3Q9NSV4 1193 aa23.72■■□□□ 1.39
CPSF1-209ENST00000532725 ATAD5Q96QE3 1844 aa23.72■■□□□ 1.39
CPSF1-209ENST00000532725 CASP8AP2Q9UKL3 1982 aa23.72■■□□□ 1.39
CPSF1-209ENST00000532725 C19orf81C9J6K1 198 aa23.71■■□□□ 1.39
CPSF1-209ENST00000532725 USP17L10C9JJH3 530 aa23.71■■□□□ 1.39
CPSF1-209ENST00000532725 HSPD1P10809 573 aaKnown RBP23.71■■□□□ 1.39
CPSF1-209ENST00000532725 AKR1B1P15121 316 aa23.71■■□□□ 1.39
CPSF1-209ENST00000532725 HMGCS2P54868 508 aa23.71■■□□□ 1.39
CPSF1-209ENST00000532725 SEPT2Q15019 361 aa23.71■■□□□ 1.39
CPSF1-209ENST00000532725 GADL1Q6ZQY3 521 aa23.71■■□□□ 1.39
CPSF1-209ENST00000532725 PROCA1Q8NCQ7 364 aaPredicted RBP23.71■■□□□ 1.39
CPSF1-209ENST00000532725 ROBO3Q96MS0 1386 aa23.7■■□□□ 1.38
CPSF1-209ENST00000532725 CCDC171Q6TFL3 1326 aa23.7■■□□□ 1.38
CPSF1-209ENST00000532725 MPHOSPH10O00566 681 aaKnown RBP23.7■■□□□ 1.38
CPSF1-209ENST00000532725 MTMR2Q13614 643 aa23.7■■□□□ 1.38
CPSF1-209ENST00000532725 SLC45A1Q9Y2W3 748 aa23.7■■□□□ 1.38
CPSF1-209ENST00000532725 TLR2O60603 784 aa23.69■■□□□ 1.38
CPSF1-209ENST00000532725 FGAP02671 866 aa23.69■■□□□ 1.38
CPSF1-209ENST00000532725 PPARAQ07869 468 aa23.69■■□□□ 1.38
CPSF1-209ENST00000532725 DGKZQ13574 1117 aa23.69■■□□□ 1.38
CPSF1-209ENST00000532725 TREML2Q5T2D2 321 aa23.69■■□□□ 1.38
CPSF1-209ENST00000532725 TMEM179Q6ZVK1 233 aa23.69■■□□□ 1.38
CPSF1-209ENST00000532725 SIAH1Q8IUQ4 282 aa23.69■■□□□ 1.38
CPSF1-209ENST00000532725 STK11IPQ8N1F8 1099 aa23.69■■□□□ 1.38
CPSF1-209ENST00000532725 ACER1Q8TDN7 264 aa23.69■■□□□ 1.38
CPSF1-209ENST00000532725 AGTPBP1Q9UPW5 1226 aa23.69■■□□□ 1.38
CPSF1-209ENST00000532725 FKTNO75072 461 aa23.68■■□□□ 1.38
CPSF1-209ENST00000532725 RASA1P20936 1047 aa23.68■■□□□ 1.38
CPSF1-209ENST00000532725 MFAP1P55081 439 aaKnown RBP23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms