RNA–Protein interactions for RNA: ENST00000531842.1

USF1-210, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-210ENST00000531842 CDCA7LQ96GN5 454 aa11.12□□□□□ -0.63
USF1-210ENST00000531842 NEUROD6Q96NK8 337 aa11.12□□□□□ -0.63
USF1-210ENST00000531842 NUDT12Q9BQG2 462 aa11.12□□□□□ -0.63
USF1-210ENST00000531842 SNRKQ9NRH2 765 aa11.12□□□□□ -0.63
USF1-210ENST00000531842 SMCHD1A6NHR9 2005 aa11.12□□□□□ -0.63
USF1-210ENST00000531842 CNMDO75829 334 aa11.11□□□□□ -0.63
USF1-210ENST00000531842 C9orf50Q5SZB4 431 aa11.11□□□□□ -0.63
USF1-210ENST00000531842 ANO1Q5XXA6 986 aa11.11□□□□□ -0.63
USF1-210ENST00000531842 ADGRA1Q86SQ6 560 aa11.11□□□□□ -0.63
USF1-210ENST00000531842 RAI14Q9P0K7 980 aa11.11□□□□□ -0.63
USF1-210ENST00000531842 SAP30BPQ9UHR5 308 aaKnown RBP11.11□□□□□ -0.63
USF1-210ENST00000531842 MUC3AQ02505 3323 aa11.11□□□□□ -0.63
USF1-210ENST00000531842 ZNFX1Q9P2E3 1918 aaKnown RBP11.11□□□□□ -0.63
USF1-210ENST00000531842 MYO9BQ13459 2157 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 MCAMP43121 646 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 BACE1P56817 501 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 ERVK-9P63128 1117 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 ERVK-24P63145 666 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 SHHQ15465 462 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 MORN1Q5T089 497 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 ZGPATQ8N5A5 531 aaKnown RBP11.1□□□□□ -0.63
USF1-210ENST00000531842 SPATA5Q8NB90 893 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 TRPV1Q8NER1 839 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 GPRC5AQ8NFJ5 357 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 MYLIPQ8WY64 445 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 CDX2Q99626 313 aaPredicted RBP11.1□□□□□ -0.63
USF1-210ENST00000531842 COPRSQ9NQ92 184 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 EMILIN3Q9NT22 766 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 SMC4Q9NTJ3 1288 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 AATFQ9NY61 560 aaKnown RBP eCLIP11.1□□□□□ -0.63
USF1-210ENST00000531842 RAPGEFL1Q9UHV5 662 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 PALD1Q9ULE6 856 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 TNNQ9UQP3 1299 aa11.1□□□□□ -0.63
USF1-210ENST00000531842 CNGA1P29973 690 aa11.09□□□□□ -0.63
USF1-210ENST00000531842 CYP2C19P33261 490 aa11.09□□□□□ -0.63
USF1-210ENST00000531842 DYNLL1P63167 89 aaKnown RBP11.09□□□□□ -0.63
USF1-210ENST00000531842 PABPC4Q13310 644 aaKnown RBP eCLIP11.09□□□□□ -0.63
USF1-210ENST00000531842 GJC2Q5T442 439 aaPredicted RBP11.09□□□□□ -0.63
USF1-210ENST00000531842 WDR78Q5VTH9 848 aa11.09□□□□□ -0.63
USF1-210ENST00000531842 SPTY2D1Q68D10 685 aaPredicted RBP11.09□□□□□ -0.63
USF1-210ENST00000531842 PLEKHH3Q7Z736 793 aa11.09□□□□□ -0.63
USF1-210ENST00000531842 SLF2Q8IX21 1173 aa11.09□□□□□ -0.63
USF1-210ENST00000531842 NPLOC4Q8TAT6 608 aa11.09□□□□□ -0.63
USF1-210ENST00000531842 TGFBRAP1Q8WUH2 860 aa11.09□□□□□ -0.63
USF1-210ENST00000531842 TTYH1Q9H313 450 aaPredicted RBP11.09□□□□□ -0.63
USF1-210ENST00000531842 TMOD4Q9NZQ9 345 aa11.09□□□□□ -0.63
USF1-210ENST00000531842 NOB1Q9ULX3 412 aaKnown RBP11.09□□□□□ -0.63
USF1-210ENST00000531842 MYCNP04198 464 aaPredicted RBP11.08□□□□□ -0.64
USF1-210ENST00000531842 XRCC5P13010 732 aaKnown RBP11.08□□□□□ -0.64
USF1-210ENST00000531842 CAPN2P17655 700 aa11.08□□□□□ -0.64
USF1-210ENST00000531842 HOXA7P31268 230 aaPredicted RBP11.08□□□□□ -0.64
USF1-210ENST00000531842 RTP1P59025 263 aa11.08□□□□□ -0.64
USF1-210ENST00000531842 EVX2Q03828 476 aa11.08□□□□□ -0.64
USF1-210ENST00000531842 PDE3AQ14432 1141 aa11.08□□□□□ -0.64
USF1-210ENST00000531842 SH3RF1Q7Z6J0 888 aa11.08□□□□□ -0.64
USF1-210ENST00000531842 WDR18Q9BV38 432 aa11.08□□□□□ -0.64
USF1-210ENST00000531842 AS3MTQ9HBK9 375 aa11.08□□□□□ -0.64
USF1-210ENST00000531842 ZBTB21Q9ULJ3 1066 aa11.08□□□□□ -0.64
USF1-210ENST00000531842 ATP11BQ9Y2G3 1177 aa11.08□□□□□ -0.64
USF1-210ENST00000531842 FLT1P17948 1338 aa11.08□□□□□ -0.64
USF1-210ENST00000531842 PDS5AQ29RF7 1337 aaKnown RBP11.08□□□□□ -0.64
USF1-210ENST00000531842 USP17L10C9JJH3 530 aa11.07□□□□□ -0.64
USF1-210ENST00000531842 RGS2P41220 211 aa11.07□□□□□ -0.64
USF1-210ENST00000531842 MAP2K5Q13163 448 aa11.07□□□□□ -0.64
USF1-210ENST00000531842 ZNF697Q5TEC3 545 aa11.07□□□□□ -0.64
USF1-210ENST00000531842 CCAR1Q8IX12 1150 aaKnown RBP11.07□□□□□ -0.64
USF1-210ENST00000531842 MAFAQ8NHW3 353 aaPredicted RBP11.07□□□□□ -0.64
USF1-210ENST00000531842 SOCS4Q8WXH5 440 aa11.07□□□□□ -0.64
USF1-210ENST00000531842 APBA2Q99767 749 aa11.07□□□□□ -0.64
USF1-210ENST00000531842 SEMA6BQ9H3T3 888 aa11.07□□□□□ -0.64
USF1-210ENST00000531842 PRDM5Q9NQX1 630 aaPredicted RBP11.07□□□□□ -0.64
USF1-210ENST00000531842 BTBD7Q9P203 1132 aa11.07□□□□□ -0.64
USF1-210ENST00000531842 LRP2BPQ9P2M1 347 aa11.07□□□□□ -0.64
USF1-210ENST00000531842 FBXO3Q9UK99 471 aa11.07□□□□□ -0.64
USF1-210ENST00000531842 COL11A1P12107 1806 aaPredicted RBP11.07□□□□□ -0.64
USF1-210ENST00000531842 SRGAP3O43295 1099 aa11.06□□□□□ -0.64
USF1-210ENST00000531842 NPM3O75607 178 aaKnown RBP11.06□□□□□ -0.64
USF1-210ENST00000531842 GH2P01242 217 aa11.06□□□□□ -0.64
USF1-210ENST00000531842 ITGB8P26012 769 aa11.06□□□□□ -0.64
USF1-210ENST00000531842 MAPK4P31152 587 aa11.06□□□□□ -0.64
USF1-210ENST00000531842 SLFN5Q08AF3 891 aa11.06□□□□□ -0.64
USF1-210ENST00000531842 MVPQ14764 893 aaKnown RBP11.06□□□□□ -0.64
USF1-210ENST00000531842 PRAMEF19Q5SWL8 479 aa11.06□□□□□ -0.64
USF1-210ENST00000531842 GORABQ5T7V8 394 aa11.06□□□□□ -0.64
USF1-210ENST00000531842 FAM109BQ6ICB4 259 aaPredicted RBP11.06□□□□□ -0.64
USF1-210ENST00000531842 CRACR2BQ8N4Y2 399 aaPredicted RBP11.06□□□□□ -0.64
USF1-210ENST00000531842 ACER1Q8TDN7 264 aa11.06□□□□□ -0.64
USF1-210ENST00000531842 BADQ92934 168 aa11.06□□□□□ -0.64
USF1-210ENST00000531842 FERMT2Q96AC1 680 aa11.06□□□□□ -0.64
USF1-210ENST00000531842 EDC3Q96F86 508 aaKnown RBP11.06□□□□□ -0.64
USF1-210ENST00000531842 LBHD1Q9BQE6 289 aaPredicted RBP11.06□□□□□ -0.64
USF1-210ENST00000531842 CWC22Q9HCG8 908 aaKnown RBP11.06□□□□□ -0.64
USF1-210ENST00000531842 PRDM6Q9NQX0 595 aa11.06□□□□□ -0.64
USF1-210ENST00000531842 PI4KBQ9UBF8 816 aa11.06□□□□□ -0.64
USF1-210ENST00000531842 DDX20Q9UHI6 824 aaKnown RBP11.06□□□□□ -0.64
USF1-210ENST00000531842 HERC5Q9UII4 1024 aaKnown RBP11.06□□□□□ -0.64
USF1-210ENST00000531842 PARP14Q460N5 1801 aa11.05□□□□□ -0.64
USF1-210ENST00000531842 PNMA6EA0A0J9YXQ4 647 aa11.05□□□□□ -0.64
USF1-210ENST00000531842 LDHCP07864 332 aa11.05□□□□□ -0.64
USF1-210ENST00000531842 ASNSP08243 561 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms