RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 COG6Q9Y2V7 657 aa20.49■□□□□ 0.87
CPSF1-207ENST00000531727 HMMRO75330 724 aa20.48■□□□□ 0.87
CPSF1-207ENST00000531727 GDF11O95390 407 aa20.48■□□□□ 0.87
CPSF1-207ENST00000531727 GJB1P08034 283 aa20.48■□□□□ 0.87
CPSF1-207ENST00000531727 USP5P45974 858 aa20.48■□□□□ 0.87
CPSF1-207ENST00000531727 IRF5Q13568 498 aa20.48■□□□□ 0.87
CPSF1-207ENST00000531727 SHROOM1Q2M3G4 852 aaPredicted RBP20.48■□□□□ 0.87
CPSF1-207ENST00000531727 PXYLP1Q8TE99 480 aa20.48■□□□□ 0.87
CPSF1-207ENST00000531727 COA7Q96BR5 231 aa20.48■□□□□ 0.87
CPSF1-207ENST00000531727 KIF1BPQ96EK5 621 aa20.48■□□□□ 0.87
CPSF1-207ENST00000531727 ASCC2Q9H1I8 757 aaPredicted RBP20.48■□□□□ 0.87
CPSF1-207ENST00000531727 ZBTB21Q9ULJ3 1066 aa20.48■□□□□ 0.87
CPSF1-207ENST00000531727 GJA8P48165 433 aa20.47■□□□□ 0.87
CPSF1-207ENST00000531727 TTF1Q15361 905 aaPredicted RBP20.47■□□□□ 0.87
CPSF1-207ENST00000531727 SIRT2Q8IXJ6 389 aa20.47■□□□□ 0.87
CPSF1-207ENST00000531727 CLASRPQ8N2M8 674 aaKnown RBP20.47■□□□□ 0.87
CPSF1-207ENST00000531727 RNF208Q9H0X6 261 aa20.47■□□□□ 0.87
CPSF1-207ENST00000531727 TMOD4Q9NZQ9 345 aa20.47■□□□□ 0.87
CPSF1-207ENST00000531727 C19orf81C9J6K1 198 aa20.46■□□□□ 0.87
CPSF1-207ENST00000531727 APBB1O00213 710 aa20.46■□□□□ 0.87
CPSF1-207ENST00000531727 ELNP15502 786 aa20.46■□□□□ 0.87
CPSF1-207ENST00000531727 HOXA7P31268 230 aaPredicted RBP20.46■□□□□ 0.87
CPSF1-207ENST00000531727 RCAN3Q9UKA8 241 aa20.46■□□□□ 0.87
CPSF1-207ENST00000531727 DDX60LQ5H9U9 1706 aaKnown RBP20.46■□□□□ 0.87
CPSF1-207ENST00000531727 USP17L10C9JJH3 530 aa20.45■□□□□ 0.86
CPSF1-207ENST00000531727 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.45■□□□□ 0.86
CPSF1-207ENST00000531727 RIOK1Q9BRS2 568 aaKnown RBP20.45■□□□□ 0.86
CPSF1-207ENST00000531727 EHD4Q9H223 541 aa20.45■□□□□ 0.86
CPSF1-207ENST00000531727 CHMP4BQ9H444 224 aaKnown RBP20.45■□□□□ 0.86
CPSF1-207ENST00000531727 MORF4L1Q9UBU8 362 aa20.45■□□□□ 0.86
CPSF1-207ENST00000531727 NAV1Q8NEY1 1877 aa20.44■□□□□ 0.86
CPSF1-207ENST00000531727 RAB11FIP3O75154 756 aa20.44■□□□□ 0.86
CPSF1-207ENST00000531727 INHAP05111 366 aa20.44■□□□□ 0.86
CPSF1-207ENST00000531727 IFIT2P09913 472 aaKnown RBP20.44■□□□□ 0.86
CPSF1-207ENST00000531727 IRX3P78415 501 aaPredicted RBP20.44■□□□□ 0.86
CPSF1-207ENST00000531727 TATDN1Q6P1N9 297 aa20.44■□□□□ 0.86
CPSF1-207ENST00000531727 TTC6Q86TZ1 520 aa20.44■□□□□ 0.86
CPSF1-207ENST00000531727 UNC93B1Q9H1C4 597 aa20.44■□□□□ 0.86
CPSF1-207ENST00000531727 SERPINB13Q9UIV8 391 aa20.44■□□□□ 0.86
CPSF1-207ENST00000531727 GH2P01242 217 aa20.43■□□□□ 0.86
CPSF1-207ENST00000531727 PDE6AP16499 860 aa20.43■□□□□ 0.86
CPSF1-207ENST00000531727 U2AF1L4Q8WU68 220 aaKnown RBP20.43■□□□□ 0.86
CPSF1-207ENST00000531727 TAOK2Q9UL54 1235 aa20.43■□□□□ 0.86
CPSF1-207ENST00000531727 DOCK3Q8IZD9 2030 aa20.43■□□□□ 0.86
CPSF1-207ENST00000531727 MAGEB6P1A0A0J9YX57 407 aa20.42■□□□□ 0.86
CPSF1-207ENST00000531727 GOLIM4O00461 696 aa20.42■□□□□ 0.86
CPSF1-207ENST00000531727 HERVK_113P62684 666 aa20.42■□□□□ 0.86
CPSF1-207ENST00000531727 SLC9C2Q5TAH2 1124 aa20.42■□□□□ 0.86
CPSF1-207ENST00000531727 UBE2Q1Q7Z7E8 422 aa20.42■□□□□ 0.86
CPSF1-207ENST00000531727 P2RX7Q99572 595 aaKnown RBP20.42■□□□□ 0.86
CPSF1-207ENST00000531727 SGPL1O95470 568 aa20.41■□□□□ 0.86
CPSF1-207ENST00000531727 HABP4Q5JVS0 413 aaKnown RBP20.41■□□□□ 0.86
CPSF1-207ENST00000531727 USP17L2Q6R6M4 530 aa20.41■□□□□ 0.86
CPSF1-207ENST00000531727 DNAJC2Q99543 621 aaKnown RBP20.41■□□□□ 0.86
CPSF1-207ENST00000531727 EMILIN3Q9NT22 766 aa20.41■□□□□ 0.86
CPSF1-207ENST00000531727 PLXNB2O15031 1838 aa20.41■□□□□ 0.86
CPSF1-207ENST00000531727 TCRBV5S4A2TA0A5A2 114 aa20.4■□□□□ 0.86
CPSF1-207ENST00000531727 PLCD1P51178 756 aa20.4■□□□□ 0.86
CPSF1-207ENST00000531727 CERKLQ49MI3 558 aaPredicted RBP20.4■□□□□ 0.86
CPSF1-207ENST00000531727 CRNKL1Q9BZJ0 848 aaKnown RBP20.4■□□□□ 0.86
CPSF1-207ENST00000531727 ZNF532Q9HCE3 1301 aa20.4■□□□□ 0.86
CPSF1-207ENST00000531727 GJD2Q9UKL4 321 aa20.4■□□□□ 0.86
CPSF1-207ENST00000531727 CAPN2P17655 700 aa20.39■□□□□ 0.85
CPSF1-207ENST00000531727 ABCB5Q2M3G0 1257 aa20.39■□□□□ 0.85
CPSF1-207ENST00000531727 GPRC5AQ8NFJ5 357 aa20.39■□□□□ 0.85
CPSF1-207ENST00000531727 GTF3C2Q8WUA4 911 aaPredicted RBP20.39■□□□□ 0.85
CPSF1-207ENST00000531727 C12orf42Q96LP6 360 aa20.39■□□□□ 0.85
CPSF1-207ENST00000531727 BCL11AQ9H165 835 aa20.39■□□□□ 0.85
CPSF1-207ENST00000531727 TXNRD2Q9NNW7 524 aa20.39■□□□□ 0.85
CPSF1-207ENST00000531727 PAK6Q9NQU5 681 aaPredicted RBP20.39■□□□□ 0.85
CPSF1-207ENST00000531727 SHMT1P34896 483 aa20.38■□□□□ 0.85
CPSF1-207ENST00000531727 PDE3AQ14432 1141 aa20.38■□□□□ 0.85
CPSF1-207ENST00000531727 RAB3GAP1Q15042 981 aa20.38■□□□□ 0.85
CPSF1-207ENST00000531727 EDC3Q96F86 508 aaKnown RBP20.38■□□□□ 0.85
CPSF1-207ENST00000531727 FEZ1Q99689 392 aa20.38■□□□□ 0.85
CPSF1-207ENST00000531727 RBPJLQ9UBG7 517 aa20.38■□□□□ 0.85
CPSF1-207ENST00000531727 H0YGN5 161 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 PEX10O60683 326 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 FARP2O94887 1054 aaPredicted RBP20.37■□□□□ 0.85
CPSF1-207ENST00000531727 HMGCRP04035 888 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 POLR3DP05423 398 aaPredicted RBP20.37■□□□□ 0.85
CPSF1-207ENST00000531727 ATP5JP18859 108 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 GABPAQ06546 454 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 C20orf194Q5TEA3 1177 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 LCORLQ8N3X6 602 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 DPF3Q92784 378 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 DEFB118Q96PH6 123 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 HTATIP2Q9BUP3 242 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 KIAA1683Q9H0B3 1180 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 BOLA2Q9H3K6 86 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 CABP5Q9NP86 173 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 PAG1Q9NWQ8 432 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 MCM9Q9NXL9 1143 aa20.37■□□□□ 0.85
CPSF1-207ENST00000531727 TFRCP02786 760 aaKnown RBP20.36■□□□□ 0.85
CPSF1-207ENST00000531727 USP14P54578 494 aa20.36■□□□□ 0.85
CPSF1-207ENST00000531727 ERVK-9P63128 1117 aa20.36■□□□□ 0.85
CPSF1-207ENST00000531727 ERVK-24P63145 666 aa20.36■□□□□ 0.85
CPSF1-207ENST00000531727 ZYXQ15942 572 aaKnown RBP20.36■□□□□ 0.85
CPSF1-207ENST00000531727 CRISPLD2Q9H0B8 497 aa20.36■□□□□ 0.85
CPSF1-207ENST00000531727 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms