RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TMTC2Q8N394 836 aa22.05■■□□□ 1.12
VPS28-213ENST00000530983 MLKLQ8NB16 471 aa22.05■■□□□ 1.12
VPS28-213ENST00000530983 ACTN4O43707 911 aaKnown RBP22.05■■□□□ 1.12
VPS28-213ENST00000530983 EIF5P55010 431 aaKnown RBP22.05■■□□□ 1.12
VPS28-213ENST00000530983 NUP133Q8WUM0 1156 aa22.05■■□□□ 1.12
VPS28-213ENST00000530983 SMARCE1Q969G3 411 aa22.05■■□□□ 1.12
VPS28-213ENST00000530983 MED15Q96RN5 788 aa22.05■■□□□ 1.12
VPS28-213ENST00000530983 ARHGAP6O43182 974 aa22.04■■□□□ 1.12
VPS28-213ENST00000530983 PPARAQ07869 468 aa22.04■■□□□ 1.12
VPS28-213ENST00000530983 TAF3Q5VWG9 929 aa22.04■■□□□ 1.12
VPS28-213ENST00000530983 USP49Q70CQ1 688 aa22.04■■□□□ 1.12
VPS28-213ENST00000530983 ENOX1Q8TC92 643 aaKnown RBP22.04■■□□□ 1.12
VPS28-213ENST00000530983 SHISA4Q96DD7 197 aa22.04■■□□□ 1.12
VPS28-213ENST00000530983 RNF41Q9H4P4 317 aaPredicted RBP22.04■■□□□ 1.12
VPS28-213ENST00000530983 ADGRA1Q86SQ6 560 aa22.03■■□□□ 1.12
VPS28-213ENST00000530983 TRMT44Q8IYL2 757 aaKnown RBP22.03■■□□□ 1.12
VPS28-213ENST00000530983 PDILTQ8N807 584 aa22.03■■□□□ 1.12
VPS28-213ENST00000530983 DOT1LQ8TEK3 1739 aa22.03■■□□□ 1.12
VPS28-213ENST00000530983 VWA3AA6NCI4 1184 aa22.03■■□□□ 1.12
VPS28-213ENST00000530983 SPATA20Q8TB22 786 aa22.03■■□□□ 1.12
VPS28-213ENST00000530983 CSRNP2Q9H175 543 aa22.03■■□□□ 1.12
VPS28-213ENST00000530983 LRP2BPQ9P2M1 347 aa22.03■■□□□ 1.12
VPS28-213ENST00000530983 PPP2R2CQ9Y2T4 447 aa22.03■■□□□ 1.12
VPS28-213ENST00000530983 BCL9LQ86UU0 1499 aa22.02■■□□□ 1.12
VPS28-213ENST00000530983 ATP2B1P20020 1258 aa22.02■■□□□ 1.12
VPS28-213ENST00000530983 SEC23AQ15436 765 aa22.02■■□□□ 1.12
VPS28-213ENST00000530983 TC2NQ8N9U0 490 aa22.02■■□□□ 1.12
VPS28-213ENST00000530983 TRIML1Q8N9V2 468 aa22.02■■□□□ 1.12
VPS28-213ENST00000530983 UBAC1Q9BSL1 405 aa22.02■■□□□ 1.12
VPS28-213ENST00000530983 CABP5Q9NP86 173 aa22.02■■□□□ 1.12
VPS28-213ENST00000530983 DACH1Q9UI36 760 aa22.02■■□□□ 1.12
VPS28-213ENST00000530983 MYH2Q9UKX2 1941 aa22.02■■□□□ 1.12
VPS28-213ENST00000530983 ZSCAN12O43309 604 aa22.02■■□□□ 1.12
VPS28-213ENST00000530983 SPECC1LQ69YQ0 1117 aa22.02■■□□□ 1.12
VPS28-213ENST00000530983 SDR42E1Q8WUS8 393 aa22.02■■□□□ 1.12
VPS28-213ENST00000530983 BAG1Q99933 345 aaPredicted RBP22.02■■□□□ 1.12
VPS28-213ENST00000530983 CEP131Q9UPN4 1083 aa22.02■■□□□ 1.12
VPS28-213ENST00000530983 TNKSO95271 1327 aa22.02■■□□□ 1.11
VPS28-213ENST00000530983 COL4A1P02462 1669 aa22.02■■□□□ 1.11
VPS28-213ENST00000530983 SMIM22K7EJ46 135 aa22.01■■□□□ 1.11
VPS28-213ENST00000530983 INTS5Q6P9B9 1019 aaKnown RBP22.01■■□□□ 1.11
VPS28-213ENST00000530983 PARP3Q9Y6F1 533 aa22.01■■□□□ 1.11
VPS28-213ENST00000530983 LAMB2P55268 1798 aa22.01■■□□□ 1.11
VPS28-213ENST00000530983 CDK11BP21127 795 aaKnown RBP22.01■■□□□ 1.11
VPS28-213ENST00000530983 IGHMBP2P38935 993 aaKnown RBP22.01■■□□□ 1.11
VPS28-213ENST00000530983 TERF2Q15554 542 aa22.01■■□□□ 1.11
VPS28-213ENST00000530983 CCDC152Q4G0S7 254 aa22.01■■□□□ 1.11
VPS28-213ENST00000530983 RNF26Q9BY78 433 aaPredicted RBP22.01■■□□□ 1.11
VPS28-213ENST00000530983 COL14A1Q05707 1796 aaKnown RBP22■■□□□ 1.11
VPS28-213ENST00000530983 FAM205CA6NFA0 338 aa22■■□□□ 1.11
VPS28-213ENST00000530983 CYP7A1P22680 504 aa22■■□□□ 1.11
VPS28-213ENST00000530983 ARHGAP29Q52LW3 1261 aa22■■□□□ 1.11
VPS28-213ENST00000530983 KANK3Q6NY19 840 aa22■■□□□ 1.11
VPS28-213ENST00000530983 NOL10Q9BSC4 688 aaKnown RBP22■■□□□ 1.11
VPS28-213ENST00000530983 SAMSN1Q9NSI8 373 aaKnown RBP22■■□□□ 1.11
VPS28-213ENST00000530983 MINDY4BA8MYZ0 360 aa22■■□□□ 1.11
VPS28-213ENST00000530983 EXOC5O00471 708 aa22■■□□□ 1.11
VPS28-213ENST00000530983 STX10O60499 249 aa22■■□□□ 1.11
VPS28-213ENST00000530983 ADKP55263 362 aaKnown RBP22■■□□□ 1.11
VPS28-213ENST00000530983 CHRNDQ07001 517 aa22■■□□□ 1.11
VPS28-213ENST00000530983 NUTM2AQ8IVF1 878 aaPredicted RBP22■■□□□ 1.11
VPS28-213ENST00000530983 ANAPC4Q9UJX5 808 aa22■■□□□ 1.11
VPS28-213ENST00000530983 IQSEC3Q9UPP2 1182 aaPredicted RBP22■■□□□ 1.11
VPS28-213ENST00000530983 CICQ96RK0 1608 aaPredicted RBP22■■□□□ 1.11
VPS28-213ENST00000530983 RTL9Q8NET4 1388 aa21.99■■□□□ 1.11
VPS28-213ENST00000530983 URI1O94763 535 aaPredicted RBP21.99■■□□□ 1.11
VPS28-213ENST00000530983 PLCD1P51178 756 aa21.99■■□□□ 1.11
VPS28-213ENST00000530983 CLCN6P51797 869 aa21.99■■□□□ 1.11
VPS28-213ENST00000530983 PKN1Q16512 942 aa21.99■■□□□ 1.11
VPS28-213ENST00000530983 BAZ2AQ9UIF9 1905 aaKnown RBP21.99■■□□□ 1.11
VPS28-213ENST00000530983 A0A087X0B3 334 aa21.98■■□□□ 1.11
VPS28-213ENST00000530983 EARS2Q5JPH6 523 aaKnown RBP21.98■■□□□ 1.11
VPS28-213ENST00000530983 ESR2Q92731 530 aa21.98■■□□□ 1.11
VPS28-213ENST00000530983 SRRTQ9BXP5 876 aaKnown RBP21.98■■□□□ 1.11
VPS28-213ENST00000530983 VPS54Q9P1Q0 977 aa21.98■■□□□ 1.11
VPS28-213ENST00000530983 WNK3Q9BYP7 1800 aa21.98■■□□□ 1.11
VPS28-213ENST00000530983 CAMTA2O94983 1202 aa21.98■■□□□ 1.11
VPS28-213ENST00000530983 TOGARAM2Q6ZUX3 1019 aa21.98■■□□□ 1.11
VPS28-213ENST00000530983 ENAHQ8N8S7 591 aaPredicted RBP21.98■■□□□ 1.11
VPS28-213ENST00000530983 CCDC87Q9NVE4 849 aa21.98■■□□□ 1.11
VPS28-213ENST00000530983 AATFQ9NY61 560 aaKnown RBP eCLIP21.98■■□□□ 1.116e-6■■■■□ 25.6
VPS28-213ENST00000530983 DUOX1Q9NRD9 1551 aa21.98■■□□□ 1.11
VPS28-213ENST00000530983 CACNA1SQ13698 1873 aa21.98■■□□□ 1.11
VPS28-213ENST00000530983 TADA3O75528 432 aa21.97■■□□□ 1.11
VPS28-213ENST00000530983 NTSR2O95665 410 aa21.97■■□□□ 1.11
VPS28-213ENST00000530983 ERCC5P28715 1186 aaPredicted RBP21.97■■□□□ 1.11
VPS28-213ENST00000530983 FUT2Q10981 343 aa21.97■■□□□ 1.11
VPS28-213ENST00000530983 NR1I3Q14994 352 aa21.97■■□□□ 1.11
VPS28-213ENST00000530983 PHF20Q9BVI0 1012 aa21.97■■□□□ 1.11
VPS28-213ENST00000530983 RAI14Q9P0K7 980 aa21.97■■□□□ 1.11
VPS28-213ENST00000530983 TRIM75PA6NK02 468 aa21.97■■□□□ 1.11
VPS28-213ENST00000530983 CRKLP46109 303 aaKnown RBP21.97■■□□□ 1.11
VPS28-213ENST00000530983 PPP2R5BQ15173 497 aa21.97■■□□□ 1.11
VPS28-213ENST00000530983 PARP10Q53GL7 1025 aa21.97■■□□□ 1.11
VPS28-213ENST00000530983 FAM177A1Q8N128 213 aaPredicted RBP21.97■■□□□ 1.11
VPS28-213ENST00000530983 UBXN4Q92575 508 aa21.97■■□□□ 1.11
VPS28-213ENST00000530983 DHX58Q96C10 678 aa21.97■■□□□ 1.11
VPS28-213ENST00000530983 EPSTI1Q96J88 318 aa21.97■■□□□ 1.11
VPS28-213ENST00000530983 ABCF2Q9UG63 623 aa21.97■■□□□ 1.11
VPS28-213ENST00000530983 COL1A1P02452 1464 aaPredicted RBP21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms