RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 DNAJC2Q99543 621 aaKnown RBP15.81■□□□□ 0.12
CPSF1-204ENST00000529288 ZBTB21Q9ULJ3 1066 aa15.81■□□□□ 0.12
CPSF1-204ENST00000529288 MAGEB6P1A0A0J9YX57 407 aa15.8■□□□□ 0.12
CPSF1-204ENST00000529288 PEX10O60683 326 aa15.8■□□□□ 0.12
CPSF1-204ENST00000529288 IGSF3O75054 1194 aa15.8■□□□□ 0.12
CPSF1-204ENST00000529288 HMMRO75330 724 aa15.8■□□□□ 0.12
CPSF1-204ENST00000529288 GH2P01242 217 aa15.8■□□□□ 0.12
CPSF1-204ENST00000529288 ZYXQ15942 572 aaKnown RBP15.8■□□□□ 0.12
CPSF1-204ENST00000529288 U2AF1L4Q8WU68 220 aaKnown RBP15.8■□□□□ 0.12
CPSF1-204ENST00000529288 P2RX7Q99572 595 aaKnown RBP15.8■□□□□ 0.12
CPSF1-204ENST00000529288 MKI67P46013 3256 aaKnown RBP15.79■□□□□ 0.12
CPSF1-204ENST00000529288 C19orf81C9J6K1 198 aa15.79■□□□□ 0.12
CPSF1-204ENST00000529288 H0YGN5 161 aa15.79■□□□□ 0.12
CPSF1-204ENST00000529288 GOLIM4O00461 696 aa15.79■□□□□ 0.12
CPSF1-204ENST00000529288 POLR3DP05423 398 aaPredicted RBP15.79■□□□□ 0.12
CPSF1-204ENST00000529288 IRF5Q13568 498 aa15.79■□□□□ 0.12
CPSF1-204ENST00000529288 RAB3GAP1Q15042 981 aa15.79■□□□□ 0.12
CPSF1-204ENST00000529288 TTF1Q15361 905 aaPredicted RBP15.79■□□□□ 0.12
CPSF1-204ENST00000529288 TTC6Q86TZ1 520 aa15.79■□□□□ 0.12
CPSF1-204ENST00000529288 CERS3Q8IU89 383 aa15.79■□□□□ 0.12
CPSF1-204ENST00000529288 CCAR1Q8IX12 1150 aaKnown RBP15.79■□□□□ 0.12
CPSF1-204ENST00000529288 RPAP2Q8IXW5 612 aaPredicted RBP15.79■□□□□ 0.12
CPSF1-204ENST00000529288 PXYLP1Q8TE99 480 aa15.79■□□□□ 0.12
CPSF1-204ENST00000529288 KIF1BPQ96EK5 621 aa15.79■□□□□ 0.12
CPSF1-204ENST00000529288 DEFB118Q96PH6 123 aa15.79■□□□□ 0.12
CPSF1-204ENST00000529288 FEZ1Q99689 392 aa15.79■□□□□ 0.12
CPSF1-204ENST00000529288 DDX19BQ9UMR2 479 aa15.79■□□□□ 0.12
CPSF1-204ENST00000529288 KIAA0100Q14667 2235 aaKnown RBP15.78■□□□□ 0.12
CPSF1-204ENST00000529288 FARP2O94887 1054 aaPredicted RBP15.78■□□□□ 0.12
CPSF1-204ENST00000529288 SGPL1O95470 568 aa15.78■□□□□ 0.12
CPSF1-204ENST00000529288 SLC9C2Q5TAH2 1124 aa15.78■□□□□ 0.12
CPSF1-204ENST00000529288 USP17L2Q6R6M4 530 aa15.78■□□□□ 0.12
CPSF1-204ENST00000529288 METTL16Q86W50 562 aaKnown RBP15.78■□□□□ 0.12
CPSF1-204ENST00000529288 PAGR1Q9BTK6 254 aa15.78■□□□□ 0.12
CPSF1-204ENST00000529288 GINM1Q9NU53 330 aa15.78■□□□□ 0.12
CPSF1-204ENST00000529288 SERPINB13Q9UIV8 391 aa15.78■□□□□ 0.12
CPSF1-204ENST00000529288 RCAN3Q9UKA8 241 aa15.78■□□□□ 0.12
CPSF1-204ENST00000529288 COLQQ9Y215 455 aaPredicted RBP15.78■□□□□ 0.12
CPSF1-204ENST00000529288 BRCA2P51587 3418 aa15.77■□□□□ 0.12
CPSF1-204ENST00000529288 CYP2B6P20813 491 aa15.77■□□□□ 0.12
CPSF1-204ENST00000529288 HERVK_113P62684 666 aa15.77■□□□□ 0.12
CPSF1-204ENST00000529288 CERKLQ49MI3 558 aaPredicted RBP15.77■□□□□ 0.12
CPSF1-204ENST00000529288 GPRC5AQ8NFJ5 357 aa15.77■□□□□ 0.12
CPSF1-204ENST00000529288 HTATIP2Q9BUP3 242 aa15.77■□□□□ 0.12
CPSF1-204ENST00000529288 CWC22Q9HCG8 908 aaKnown RBP15.77■□□□□ 0.12
CPSF1-204ENST00000529288 CABP5Q9NP86 173 aa15.77■□□□□ 0.12
CPSF1-204ENST00000529288 EMILIN3Q9NT22 766 aa15.77■□□□□ 0.12
CPSF1-204ENST00000529288 RBBP6Q7Z6E9 1792 aaKnown RBP15.77■□□□□ 0.11
CPSF1-204ENST00000529288 ZNF532Q9HCE3 1301 aa15.76■□□□□ 0.11
CPSF1-204ENST00000529288 MPHOSPH10O00566 681 aaKnown RBP15.76■□□□□ 0.11
CPSF1-204ENST00000529288 PDE6AP16499 860 aa15.76■□□□□ 0.11
CPSF1-204ENST00000529288 HOXA7P31268 230 aaPredicted RBP15.76■□□□□ 0.11
CPSF1-204ENST00000529288 PLCD1P51178 756 aa15.76■□□□□ 0.11
CPSF1-204ENST00000529288 ABCB5Q2M3G0 1257 aa15.76■□□□□ 0.11
CPSF1-204ENST00000529288 SIRT2Q8IXJ6 389 aa15.76■□□□□ 0.11
CPSF1-204ENST00000529288 EDC3Q96F86 508 aaKnown RBP15.76■□□□□ 0.11
CPSF1-204ENST00000529288 CRNKL1Q9BZJ0 848 aaKnown RBP15.76■□□□□ 0.11
CPSF1-204ENST00000529288 BOLA2Q9H3K6 86 aa15.76■□□□□ 0.11
CPSF1-204ENST00000529288 ZBTB40Q9NUA8 1239 aa15.76■□□□□ 0.11
CPSF1-204ENST00000529288 MCM9Q9NXL9 1143 aa15.76■□□□□ 0.11
CPSF1-204ENST00000529288 MAST2Q6P0Q8 1798 aa15.76■□□□□ 0.11
CPSF1-204ENST00000529288 PHIPQ8WWQ0 1821 aa15.75■□□□□ 0.11
CPSF1-204ENST00000529288 RAB11FIP3O75154 756 aa15.75■□□□□ 0.11
CPSF1-204ENST00000529288 TRIM32Q13049 653 aa15.75■□□□□ 0.11
CPSF1-204ENST00000529288 TATDN1Q6P1N9 297 aa15.75■□□□□ 0.11
CPSF1-204ENST00000529288 RIOK1Q9BRS2 568 aaKnown RBP15.75■□□□□ 0.11
CPSF1-204ENST00000529288 CHMP4BQ9H444 224 aaKnown RBP15.75■□□□□ 0.11
CPSF1-204ENST00000529288 TXNRD2Q9NNW7 524 aa15.75■□□□□ 0.11
CPSF1-204ENST00000529288 MORF4L1Q9UBU8 362 aa15.75■□□□□ 0.11
CPSF1-204ENST00000529288 HMGCRP04035 888 aa15.74■□□□□ 0.11
CPSF1-204ENST00000529288 PDE3AQ14432 1141 aa15.74■□□□□ 0.11
CPSF1-204ENST00000529288 Q3C1V9 767 aa15.74■□□□□ 0.11
CPSF1-204ENST00000529288 WDR78Q5VTH9 848 aa15.74■□□□□ 0.11
CPSF1-204ENST00000529288 CHRDL2Q6WN34 429 aa15.74■□□□□ 0.11
CPSF1-204ENST00000529288 ACER1Q8TDN7 264 aa15.74■□□□□ 0.11
CPSF1-204ENST00000529288 SDR42E1Q8WUS8 393 aa15.74■□□□□ 0.11
CPSF1-204ENST00000529288 NUDT12Q9BQG2 462 aa15.74■□□□□ 0.11
CPSF1-204ENST00000529288 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.74■□□□□ 0.11
CPSF1-204ENST00000529288 EHD4Q9H223 541 aa15.74■□□□□ 0.11
CPSF1-204ENST00000529288 ARMT1Q9H993 441 aa15.74■□□□□ 0.11
CPSF1-204ENST00000529288 RBPJLQ9UBG7 517 aa15.74■□□□□ 0.11
CPSF1-204ENST00000529288 GJD2Q9UKL4 321 aa15.74■□□□□ 0.11
CPSF1-204ENST00000529288 USP17L15C9J2P7 530 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 USP17L13C9JLJ4 530 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 USP17L11C9JVI0 530 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 USP17L18D6R9N7 530 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 USP17L22D6RA61 530 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 USP17L17D6RBQ6 530 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 USP17L19D6RCP7 530 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 USP17L20D6RJB6 530 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 EVX2Q03828 476 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 USP17L24Q0WX57 530 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 SLFNL1Q499Z3 407 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 C20orf194Q5TEA3 1177 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 TMED8Q6PL24 325 aaPredicted RBP15.73■□□□□ 0.11
CPSF1-204ENST00000529288 LCORLQ8N3X6 602 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.73■□□□□ 0.11
CPSF1-204ENST00000529288 HMX1Q9NP08 348 aaPredicted RBP15.73■□□□□ 0.11
CPSF1-204ENST00000529288 PAG1Q9NWQ8 432 aa15.73■□□□□ 0.11
CPSF1-204ENST00000529288 SMARCA5O60264 1052 aaPredicted RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms