RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 ATXN3LQ9H3M9 355 aa4.86□□□□□ -1.63
CD44-229ENST00000528672 CYP8B1Q9UNU6 501 aa4.86□□□□□ -1.63
CD44-229ENST00000528672 AP4E1Q9UPM8 1137 aa4.86□□□□□ -1.63
CD44-229ENST00000528672 SUPT16HQ9Y5B9 1047 aaKnown RBP4.86□□□□□ -1.63
CD44-229ENST00000528672 PCDHB14Q9Y5E9 798 aa4.86□□□□□ -1.63
CD44-229ENST00000528672 ACTL7BQ9Y614 415 aa4.86□□□□□ -1.63
CD44-229ENST00000528672 CHURC1-FNTBB4DL54 471 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 PPM1GO15355 546 aaPredicted RBP4.85□□□□□ -1.63
CD44-229ENST00000528672 YBX3P16989 372 aaKnown RBP eCLIP4.85□□□□□ -1.63
CD44-229ENST00000528672 MAP4P27816 1152 aaKnown RBP4.85□□□□□ -1.63
CD44-229ENST00000528672 ID3Q02535 119 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 ZYXQ15942 572 aaKnown RBP4.85□□□□□ -1.63
CD44-229ENST00000528672 ZC3H12AQ5D1E8 599 aaKnown RBP4.85□□□□□ -1.63
CD44-229ENST00000528672 LCE1DQ5T752 114 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 FBXW10Q5XX13 1052 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 INTS5Q6P9B9 1019 aaKnown RBP4.85□□□□□ -1.63
CD44-229ENST00000528672 PAOXQ6QHF9 649 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 DYMQ7RTS9 669 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 REC114Q7Z4M0 266 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 MICAL1Q8TDZ2 1067 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 XAGE3Q8WTP9 111 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 FANCD2OSQ96PS1 177 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 TNKS2Q9H2K2 1166 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 ACSS3Q9H6R3 686 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 RAD18Q9NS91 495 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 CRIM1Q9NZV1 1036 aa4.85□□□□□ -1.63
CD44-229ENST00000528672 FAM95CA0A1B0GW59 222 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 NCLP19338 710 aaKnown RBP4.84□□□□□ -1.63
CD44-229ENST00000528672 RAB6AP20340 208 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 GRK4P32298 578 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 USP11P51784 963 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 ERVK-24P63145 666 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 CYP27A1Q02318 531 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 RPL6Q02878 288 aaKnown RBP4.84□□□□□ -1.63
CD44-229ENST00000528672 RING1Q06587 406 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 RBL2Q08999 1139 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 CCDC144BQ3MJ40 725 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 SOGA3Q5TF21 947 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 CYFIP1Q7L576 1253 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 RIN3Q8TB24 985 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 PMFBP1Q8TBY8 1022 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 FBLIM1Q8WUP2 373 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 ANAPC16Q96DE5 110 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 NT5C1AQ9BXI3 368 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 ZNF408Q9H9D4 720 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 U3KQE9 123 aa4.84□□□□□ -1.63
CD44-229ENST00000528672 GRIK1P39086 918 aa4.83□□□□□ -1.64
CD44-229ENST00000528672 ZDHHC13Q8IUH4 622 aa4.83□□□□□ -1.64
CD44-229ENST00000528672 SLITRK4Q8IW52 837 aa4.83□□□□□ -1.64
CD44-229ENST00000528672 HNRNPLLQ8WVV9 542 aaKnown RBP4.83□□□□□ -1.64
CD44-229ENST00000528672 ISL2Q96A47 359 aa4.83□□□□□ -1.64
CD44-229ENST00000528672 ELMO3Q96BJ8 720 aa4.83□□□□□ -1.64
CD44-229ENST00000528672 ACSF2Q96CM8 615 aaPredicted RBP4.83□□□□□ -1.64
CD44-229ENST00000528672 SHDQ96IW2 340 aa4.83□□□□□ -1.64
CD44-229ENST00000528672 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.83□□□□□ -1.64
CD44-229ENST00000528672 HIRIP3Q9BW71 556 aaPredicted RBP4.83□□□□□ -1.64
CD44-229ENST00000528672 KCNF1Q9H3M0 494 aa4.83□□□□□ -1.64
CD44-229ENST00000528672 PCMTD2Q9NV79 361 aa4.83□□□□□ -1.64
CD44-229ENST00000528672 FAM86C1Q9NVL1 165 aa4.83□□□□□ -1.64
CD44-229ENST00000528672 KLHL3Q9UH77 587 aa4.83□□□□□ -1.64
CD44-229ENST00000528672 TMA7Q9Y2S6 64 aaKnown RBP4.83□□□□□ -1.64
CD44-229ENST00000528672 TACC3Q9Y6A5 838 aa4.83□□□□□ -1.64
CD44-229ENST00000528672 HMX2A2RU54 273 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 KIAA1324LA8MWY0 1029 aaPredicted RBP4.82□□□□□ -1.64
CD44-229ENST00000528672 B2RBV5 119 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 STK10O94804 968 aaKnown RBP4.82□□□□□ -1.64
CD44-229ENST00000528672 HTR3BO95264 441 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 NFICP08651 508 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 ACRP10323 421 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 LMNB1P20700 586 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 CD97P48960 835 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 CDK5R2Q13319 367 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 SEZ6L2Q6UXD5 910 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 CCDC84Q86UT8 332 aaPredicted RBP4.82□□□□□ -1.64
CD44-229ENST00000528672 CELF2-AS1Q8N7Q2 184 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 RASGRP4Q8TDF6 673 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 SEMA6CQ9H3T2 930 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 REV1Q9UBZ9 1251 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 TJP2Q9UDY2 1190 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 PCDHB10Q9UN67 800 aa4.82□□□□□ -1.64
CD44-229ENST00000528672 TLDC2A0PJX2 215 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 ANKRD62A6NC57 917 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 SMAD7O15105 426 aaKnown RBP4.81□□□□□ -1.64
CD44-229ENST00000528672 RNGTTO60942 597 aaKnown RBP4.81□□□□□ -1.64
CD44-229ENST00000528672 RXRBP28702 533 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 ASPAP45381 313 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 SOX9P48436 509 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 MPP2Q14168 576 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 ZBTB37Q5TC79 503 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 DIEXFQ68CQ4 756 aaKnown RBP4.81□□□□□ -1.64
CD44-229ENST00000528672 OVOS1Q6IE37 1185 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 ZAR1Q86SH2 424 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 LSRQ86X29 649 aaPredicted RBP4.81□□□□□ -1.64
CD44-229ENST00000528672 KCT2Q8NC54 265 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 RNF214Q8ND24 703 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 ZNF512BQ96KM6 892 aaPredicted RBP4.81□□□□□ -1.64
CD44-229ENST00000528672 LGR4Q9BXB1 951 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 PIF1Q9H611 641 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 ZSWIM4Q9H7M6 989 aa4.81□□□□□ -1.64
CD44-229ENST00000528672 PIDD1Q9HB75 910 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms