RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SPP2Q13103 211 aa12.27□□□□□ -0.45
VPS28-204ENST00000526054 TTF1Q15361 905 aaPredicted RBP12.27□□□□□ -0.45
VPS28-204ENST00000526054 FAM110CQ1W6H9 321 aa12.27□□□□□ -0.45
VPS28-204ENST00000526054 B4GALNT3Q6L9W6 998 aa12.27□□□□□ -0.45
VPS28-204ENST00000526054 ZNF280CQ8ND82 737 aa12.27□□□□□ -0.45
VPS28-204ENST00000526054 DNAJC2Q99543 621 aaKnown RBP12.27□□□□□ -0.45
VPS28-204ENST00000526054 TAOK2Q9UL54 1235 aa12.27□□□□□ -0.45
VPS28-204ENST00000526054 COLQQ9Y215 455 aaPredicted RBP12.27□□□□□ -0.45
VPS28-204ENST00000526054 TTC41PQ6P2S7 1318 aa12.27□□□□□ -0.45
VPS28-204ENST00000526054 SZT2Q5T011 3432 aa12.27□□□□□ -0.45
VPS28-204ENST00000526054 USP17L5A8MUK1 530 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 ERC2O15083 957 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 INHAP05111 366 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 CYP2E1P05181 493 aaPredicted RBP12.26□□□□□ -0.45
VPS28-204ENST00000526054 ELNP15502 786 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 MX1P20591 662 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 HMGCS2P54868 508 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 PABPC4Q13310 644 aaKnown RBP eCLIP12.26□□□□□ -0.451e-7■■■□□ 18.8
VPS28-204ENST00000526054 IRF5Q13568 498 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 PXYLP1Q8TE99 480 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 U2AF1L4Q8WU68 220 aaKnown RBP12.26□□□□□ -0.45
VPS28-204ENST00000526054 DPF3Q92784 378 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 COA7Q96BR5 231 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 HTATIP2Q9BUP3 242 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 TRIM34Q9BYJ4 488 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 LNPKQ9C0E8 428 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 UNC93B1Q9H1C4 597 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 DHX36Q9H2U1 1008 aaKnown RBP12.26□□□□□ -0.45
VPS28-204ENST00000526054 BOLA2Q9H3K6 86 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 AS3MTQ9HBK9 375 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 PI4KBQ9UBF8 816 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 FLT1P17948 1338 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 DOCK3Q8IZD9 2030 aa12.26□□□□□ -0.45
VPS28-204ENST00000526054 MYH1P12882 1939 aa12.25□□□□□ -0.45
VPS28-204ENST00000526054 TRIOBPQ9H2D6 2365 aa12.25□□□□□ -0.45
VPS28-204ENST00000526054 IDH1O75874 414 aaKnown RBP12.25□□□□□ -0.45
VPS28-204ENST00000526054 FARP2O94887 1054 aaPredicted RBP12.25□□□□□ -0.45
VPS28-204ENST00000526054 GCLCP48506 637 aaPredicted RBP12.25□□□□□ -0.45
VPS28-204ENST00000526054 FXR1P51114 621 aaKnown RBP eCLIP12.25□□□□□ -0.45
VPS28-204ENST00000526054 NUCB1Q02818 461 aa12.25□□□□□ -0.45
VPS28-204ENST00000526054 MAP3K12Q12852 859 aa12.25□□□□□ -0.45
VPS28-204ENST00000526054 RRP1BQ14684 758 aaKnown RBP12.25□□□□□ -0.45
VPS28-204ENST00000526054 ADGRA1Q86SQ6 560 aa12.25□□□□□ -0.45
VPS28-204ENST00000526054 CHD1LQ86WJ1 897 aa12.25□□□□□ -0.45
VPS28-204ENST00000526054 MAPKAPK5Q8IW41 473 aa12.25□□□□□ -0.45
VPS28-204ENST00000526054 CRACR2BQ8N4Y2 399 aaPredicted RBP12.25□□□□□ -0.45
VPS28-204ENST00000526054 TGFBRAP1Q8WUH2 860 aa12.25□□□□□ -0.45
VPS28-204ENST00000526054 HAUS7Q99871 368 aa12.25□□□□□ -0.45
VPS28-204ENST00000526054 PIH1D3Q9NQM4 214 aaKnown RBP12.25□□□□□ -0.45
VPS28-204ENST00000526054 PAG1Q9NWQ8 432 aa12.25□□□□□ -0.45
VPS28-204ENST00000526054 GOLIM4O00461 696 aa12.24□□□□□ -0.45
VPS28-204ENST00000526054 GLRX3O76003 335 aaKnown RBP12.24□□□□□ -0.45
VPS28-204ENST00000526054 ASNSP08243 561 aa12.24□□□□□ -0.45
VPS28-204ENST00000526054 MTMR2Q13614 643 aa12.24□□□□□ -0.45
VPS28-204ENST00000526054 TMED8Q6PL24 325 aaPredicted RBP12.24□□□□□ -0.45
VPS28-204ENST00000526054 UBE2Q1Q7Z7E8 422 aa12.24□□□□□ -0.45
VPS28-204ENST00000526054 ASCC2Q9H1I8 757 aaPredicted RBP12.24□□□□□ -0.45
VPS28-204ENST00000526054 DNAJC18Q9H819 358 aa12.24□□□□□ -0.45
VPS28-204ENST00000526054 NDUFB9Q9Y6M9 179 aa12.24□□□□□ -0.45
VPS28-204ENST00000526054 RANBP2P49792 3224 aaKnown RBP12.23□□□□□ -0.45
VPS28-204ENST00000526054 SALL3Q9BXA9 1300 aa12.23□□□□□ -0.45
VPS28-204ENST00000526054 SGPL1O95470 568 aa12.23□□□□□ -0.45
VPS28-204ENST00000526054 PPP4CP60510 307 aa12.23□□□□□ -0.45
VPS28-204ENST00000526054 IRX3P78415 501 aaPredicted RBP12.23□□□□□ -0.45
VPS28-204ENST00000526054 SH3D19Q5HYK7 790 aa12.23□□□□□ -0.45
VPS28-204ENST00000526054 TSHZ3Q63HK5 1081 aa12.23□□□□□ -0.45
VPS28-204ENST00000526054 CHRDL2Q6WN34 429 aa12.23□□□□□ -0.45
VPS28-204ENST00000526054 OTUD7AQ8TE49 926 aaPredicted RBP12.23□□□□□ -0.45
VPS28-204ENST00000526054 DEFB118Q96PH6 123 aa12.23□□□□□ -0.45
VPS28-204ENST00000526054 ANTXR1Q9H6X2 564 aa12.23□□□□□ -0.45
VPS28-204ENST00000526054 TMOD4Q9NZQ9 345 aa12.23□□□□□ -0.45
VPS28-204ENST00000526054 PALD1Q9ULE6 856 aa12.23□□□□□ -0.45
VPS28-204ENST00000526054 NAV1Q8NEY1 1877 aa12.23□□□□□ -0.45
VPS28-204ENST00000526054 PLXNB2O15031 1838 aa12.23□□□□□ -0.45
VPS28-204ENST00000526054 DDX60LQ5H9U9 1706 aaKnown RBP12.23□□□□□ -0.45
VPS28-204ENST00000526054 GDF11O95390 407 aa12.22□□□□□ -0.45
VPS28-204ENST00000526054 HLA-DOAP06340 250 aa12.22□□□□□ -0.45
VPS28-204ENST00000526054 BACE1P56817 501 aa12.22□□□□□ -0.45
VPS28-204ENST00000526054 ERICH6BQ5W0A0 696 aa12.22□□□□□ -0.45
VPS28-204ENST00000526054 CENPQQ7L2Z9 268 aaPredicted RBP12.22□□□□□ -0.45
VPS28-204ENST00000526054 CCDC136Q96JN2 1154 aa12.22□□□□□ -0.45
VPS28-204ENST00000526054 WDR18Q9BV38 432 aa12.22□□□□□ -0.45
VPS28-204ENST00000526054 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.22□□□□□ -0.452e-7■■■■□ 23.7
VPS28-204ENST00000526054 PAK6Q9NQU5 681 aaPredicted RBP12.22□□□□□ -0.45
VPS28-204ENST00000526054 STAP2Q9UGK3 403 aa12.22□□□□□ -0.45
VPS28-204ENST00000526054 SAP30BPQ9UHR5 308 aaKnown RBP12.22□□□□□ -0.45
VPS28-204ENST00000526054 ZBTB21Q9ULJ3 1066 aa12.22□□□□□ -0.45
VPS28-204ENST00000526054 ALPK3Q96L96 1907 aa12.21□□□□□ -0.45
VPS28-204ENST00000526054 TFRCP02786 760 aaKnown RBP12.21□□□□□ -0.45
VPS28-204ENST00000526054 HMGCRP04035 888 aa12.21□□□□□ -0.45
VPS28-204ENST00000526054 CYP7A1P22680 504 aa12.21□□□□□ -0.45
VPS28-204ENST00000526054 PDE1AP54750 535 aa12.21□□□□□ -0.45
VPS28-204ENST00000526054 LRRFIP1Q32MZ4 808 aaKnown RBP12.21□□□□□ -0.45
VPS28-204ENST00000526054 ZSCAN25Q6NSZ9 544 aa12.21□□□□□ -0.45
VPS28-204ENST00000526054 CERS3Q8IU89 383 aa12.21□□□□□ -0.45
VPS28-204ENST00000526054 FOXP4Q8IVH2 680 aaPredicted RBP12.21□□□□□ -0.45
VPS28-204ENST00000526054 MAGEB6Q8N7X4 407 aa12.21□□□□□ -0.45
VPS28-204ENST00000526054 PI4K2BQ8TCG2 481 aa12.21□□□□□ -0.45
VPS28-204ENST00000526054 EDC3Q96F86 508 aaKnown RBP12.21□□□□□ -0.45
VPS28-204ENST00000526054 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.21□□□□□ -0.453e-6■■□□□ 14.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms