RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 HMGCS2P54868 508 aa35.87■■■■□ 3.33
SYNPO-203ENST00000518872 BACE1P56817 501 aa35.87■■■■□ 3.33
SYNPO-203ENST00000518872 TREML2Q5T2D2 321 aa35.87■■■■□ 3.33
SYNPO-203ENST00000518872 ZSCAN25Q6NSZ9 544 aa35.87■■■■□ 3.33
SYNPO-203ENST00000518872 CRBNQ96SW2 442 aa35.87■■■■□ 3.33
SYNPO-203ENST00000518872 DCP1AQ9NPI6 582 aaPredicted RBP35.87■■■■□ 3.33
SYNPO-203ENST00000518872 CENPFP49454 3210 aa35.86■■■■□ 3.33
SYNPO-203ENST00000518872 GDF11O95390 407 aa35.86■■■■□ 3.33
SYNPO-203ENST00000518872 CTGFP29279 349 aa35.86■■■■□ 3.33
SYNPO-203ENST00000518872 PSMC4P43686 418 aa35.86■■■■□ 3.33
SYNPO-203ENST00000518872 GABPAQ06546 454 aa35.86■■■■□ 3.33
SYNPO-203ENST00000518872 PABPC4Q13310 644 aaKnown RBP eCLIP35.86■■■■□ 3.33
SYNPO-203ENST00000518872 SLC4A8Q2Y0W8 1093 aa35.86■■■■□ 3.33
SYNPO-203ENST00000518872 PTCH2Q9Y6C5 1203 aa35.86■■■■□ 3.33
SYNPO-203ENST00000518872 C19orf81C9J6K1 198 aa35.85■■■■□ 3.33
SYNPO-203ENST00000518872 PLCD1P51178 756 aa35.85■■■■□ 3.33
SYNPO-203ENST00000518872 TRIM47Q96LD4 638 aa35.85■■■■□ 3.33
SYNPO-203ENST00000518872 AAMPQ13685 434 aa35.84■■■■□ 3.33
SYNPO-203ENST00000518872 SMCR8Q8TEV9 937 aaPredicted RBP35.84■■■■□ 3.33
SYNPO-203ENST00000518872 ATP8A2Q9NTI2 1148 aa35.84■■■■□ 3.33
SYNPO-203ENST00000518872 BAZ2AQ9UIF9 1905 aaKnown RBP35.84■■■■□ 3.33
SYNPO-203ENST00000518872 PDE4DIPQ5VU43 2346 aa35.83■■■■□ 3.33
SYNPO-203ENST00000518872 POLR3DP05423 398 aaPredicted RBP35.83■■■■□ 3.33
SYNPO-203ENST00000518872 HOXD10P28358 340 aa35.83■■■■□ 3.33
SYNPO-203ENST00000518872 SHROOM1Q2M3G4 852 aaPredicted RBP35.83■■■■□ 3.33
SYNPO-203ENST00000518872 SDR42E1Q8WUS8 393 aa35.83■■■■□ 3.33
SYNPO-203ENST00000518872 ARMT1Q9H993 441 aa35.83■■■■□ 3.33
SYNPO-203ENST00000518872 MCM9Q9NXL9 1143 aa35.83■■■■□ 3.33
SYNPO-203ENST00000518872 SRRDQ9UH36 339 aa35.83■■■■□ 3.33
SYNPO-203ENST00000518872 TTC41PQ6P2S7 1318 aa35.83■■■■□ 3.33
SYNPO-203ENST00000518872 USP17L10C9JJH3 530 aa35.82■■■■□ 3.32
SYNPO-203ENST00000518872 MBD4O95243 580 aa35.82■■■■□ 3.32
SYNPO-203ENST00000518872 SHMT1P34896 483 aa35.82■■■■□ 3.32
SYNPO-203ENST00000518872 MTMR2Q13614 643 aa35.82■■■■□ 3.32
SYNPO-203ENST00000518872 KBTBD3Q8NAB2 608 aa35.82■■■■□ 3.32
SYNPO-203ENST00000518872 MYH8P13535 1937 aa35.81■■■■□ 3.32
SYNPO-203ENST00000518872 GH2P01242 217 aa35.81■■■■□ 3.32
SYNPO-203ENST00000518872 SLFNL1Q499Z3 407 aa35.81■■■■□ 3.32
SYNPO-203ENST00000518872 CERKLQ49MI3 558 aaPredicted RBP35.81■■■■□ 3.32
SYNPO-203ENST00000518872 ZNF333Q96JL9 665 aa35.81■■■■□ 3.32
SYNPO-203ENST00000518872 HOXA7P31268 230 aaPredicted RBP35.8■■■■□ 3.32
SYNPO-203ENST00000518872 GCLCP48506 637 aaPredicted RBP35.8■■■■□ 3.32
SYNPO-203ENST00000518872 FCGRTP55899 365 aa35.8■■■■□ 3.32
SYNPO-203ENST00000518872 FAM110CQ1W6H9 321 aa35.8■■■■□ 3.32
SYNPO-203ENST00000518872 SLC9C1Q4G0N8 1177 aa35.8■■■■□ 3.32
SYNPO-203ENST00000518872 NBPF11Q86T75 865 aa35.8■■■■□ 3.32
SYNPO-203ENST00000518872 TMOD4Q9NZQ9 345 aa35.8■■■■□ 3.32
SYNPO-203ENST00000518872 FMNL1O95466 1100 aaPredicted RBP35.79■■■■□ 3.32
SYNPO-203ENST00000518872 OSBPP22059 807 aa35.79■■■■□ 3.32
SYNPO-203ENST00000518872 DOCK3Q8IZD9 2030 aa35.78■■■■□ 3.32
SYNPO-203ENST00000518872 HDAC1Q13547 482 aaPredicted RBP35.78■■■■□ 3.32
SYNPO-203ENST00000518872 ABCB5Q2M3G0 1257 aa35.78■■■■□ 3.32
SYNPO-203ENST00000518872 ASCC2Q9H1I8 757 aaPredicted RBP35.78■■■■□ 3.32
SYNPO-203ENST00000518872 TNRC18O15417 2968 aaPredicted RBP35.77■■■■□ 3.32
SYNPO-203ENST00000518872 CHGBP05060 677 aa35.77■■■■□ 3.32
SYNPO-203ENST00000518872 PRKAB2O43741 272 aa35.76■■■■□ 3.32
SYNPO-203ENST00000518872 C12orf42Q96LP6 360 aa35.76■■■■□ 3.32
SYNPO-203ENST00000518872 PUS7LQ9H0K6 701 aaKnown RBP35.76■■■■□ 3.32
SYNPO-203ENST00000518872 CABP5Q9NP86 173 aa35.76■■■■□ 3.32
SYNPO-203ENST00000518872 SWAP70Q9UH65 585 aa35.76■■■■□ 3.32
SYNPO-203ENST00000518872 ERC2O15083 957 aa35.75■■■■□ 3.31
SYNPO-203ENST00000518872 TSHZ3Q63HK5 1081 aa35.75■■■■□ 3.31
SYNPO-203ENST00000518872 GCC1Q96CN9 775 aa35.75■■■■□ 3.31
SYNPO-203ENST00000518872 MYPNQ86TC9 1320 aa35.75■■■■□ 3.31
SYNPO-203ENST00000518872 ZFYP08048 801 aaPredicted RBP35.74■■■■□ 3.31
SYNPO-203ENST00000518872 USP17L2Q6R6M4 530 aa35.74■■■■□ 3.31
SYNPO-203ENST00000518872 ANKRD13CQ8N6S4 541 aa35.74■■■■□ 3.31
SYNPO-203ENST00000518872 PI4K2BQ8TCG2 481 aa35.74■■■■□ 3.31
SYNPO-203ENST00000518872 GLRX3O76003 335 aaKnown RBP35.73■■■■□ 3.31
SYNPO-203ENST00000518872 KIAA1683Q9H0B3 1180 aa35.73■■■■□ 3.31
SYNPO-203ENST00000518872 EMILIN3Q9NT22 766 aa35.73■■■■□ 3.31
SYNPO-203ENST00000518872 SALL3Q9BXA9 1300 aa35.73■■■■□ 3.31
SYNPO-203ENST00000518872 IRX3P78415 501 aaPredicted RBP35.72■■■■□ 3.31
SYNPO-203ENST00000518872 EVX2Q03828 476 aa35.72■■■■□ 3.31
SYNPO-203ENST00000518872 C12orf60Q5U649 245 aa35.72■■■■□ 3.31
SYNPO-203ENST00000518872 APPBP2Q92624 585 aa35.72■■■■□ 3.31
SYNPO-203ENST00000518872 DDRGK1Q96HY6 314 aa35.72■■■■□ 3.31
SYNPO-203ENST00000518872 CYP2D6P10635 497 aa35.71■■■■□ 3.31
SYNPO-203ENST00000518872 GUCY1A2P33402 732 aa35.71■■■■□ 3.31
SYNPO-203ENST00000518872 USP14P54578 494 aa35.71■■■■□ 3.31
SYNPO-203ENST00000518872 RAB3GAP1Q15042 981 aa35.71■■■■□ 3.31
SYNPO-203ENST00000518872 MORF4L1Q9UBU8 362 aa35.71■■■■□ 3.31
SYNPO-203ENST00000518872 SLC4A4Q9Y6R1 1079 aa35.71■■■■□ 3.31
SYNPO-203ENST00000518872 POTEFA5A3E0 1075 aa35.7■■■■□ 3.31
SYNPO-203ENST00000518872 RNF113AO15541 343 aaKnown RBP35.7■■■■□ 3.31
SYNPO-203ENST00000518872 ECM2O94769 699 aaPredicted RBP35.7■■■■□ 3.31
SYNPO-203ENST00000518872 MX1P20591 662 aa35.7■■■■□ 3.31
SYNPO-203ENST00000518872 PRKCZQ05513 592 aa35.7■■■■□ 3.31
SYNPO-203ENST00000518872 LRRFIP1Q32MZ4 808 aaKnown RBP35.7■■■■□ 3.31
SYNPO-203ENST00000518872 AMOTL1Q8IY63 956 aa35.7■■■■□ 3.31
SYNPO-203ENST00000518872 RAET1EQ8TD07 263 aa35.7■■■■□ 3.31
SYNPO-203ENST00000518872 OTUD7AQ8TE49 926 aaPredicted RBP35.7■■■■□ 3.31
SYNPO-203ENST00000518872 STRBPQ96SI9 672 aaKnown RBP35.7■■■■□ 3.31
SYNPO-203ENST00000518872 SH3TC2Q8TF17 1288 aa35.69■■■■□ 3.3
SYNPO-203ENST00000518872 TMEM106CQ9BVX2 250 aa35.69■■■■□ 3.3
SYNPO-203ENST00000518872 BRCA2P51587 3418 aa35.69■■■■□ 3.3
SYNPO-203ENST00000518872 USP17L12C9JPN9 530 aa35.68■■■■□ 3.3
SYNPO-203ENST00000518872 USP17L21D6R901 530 aa35.68■■■■□ 3.3
SYNPO-203ENST00000518872 TNPO2O14787 897 aaKnown RBP35.68■■■■□ 3.3
SYNPO-203ENST00000518872 GRK4P32298 578 aa35.68■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms