RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 BCL11AQ9H165 835 aa6.21□□□□□ -1.42
NUP54-212ENST00000513248 RC3H2Q9HBD1 1191 aaKnown RBP6.21□□□□□ -1.42
NUP54-212ENST00000513248 LGR6Q9HBX8 967 aa6.21□□□□□ -1.42
NUP54-212ENST00000513248 MBNL3Q9NUK0 354 aaKnown RBP6.21□□□□□ -1.42
NUP54-212ENST00000513248 PCDHA4Q9UN74 947 aa6.21□□□□□ -1.42
NUP54-212ENST00000513248 TLR6Q9Y2C9 796 aa6.21□□□□□ -1.42
NUP54-212ENST00000513248 PCDHB5Q9Y5E4 795 aa6.21□□□□□ -1.42
NUP54-212ENST00000513248 HMGXB3Q12766 1538 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 MROH2BQ7Z745 1585 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 FAM221AA4D161 298 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 DCDC2CA8MYV0 355 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 RNASE1P07998 156 aaKnown RBP6.2□□□□□ -1.42
NUP54-212ENST00000513248 CD8BP10966 210 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 LMNB2Q03252 620 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 RAD51AP2Q09MP3 1159 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 BNIP3Q12983 259 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 MAP3K11Q16584 847 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 IFI16Q16666 785 aaKnown RBP6.2□□□□□ -1.42
NUP54-212ENST00000513248 KRTAP19-4Q3LI73 84 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 FBLN7Q53RD9 439 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 SPOCD1Q6ZMY3 1216 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 RNF214Q8ND24 703 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 KBTBD4Q9NVX7 518 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 CSADQ9Y600 493 aa6.2□□□□□ -1.42
NUP54-212ENST00000513248 GREM1O60565 184 aa6.19□□□□□ -1.42
NUP54-212ENST00000513248 LMNB1P20700 586 aa6.19□□□□□ -1.42
NUP54-212ENST00000513248 RACK1P63244 317 aaKnown RBP6.19□□□□□ -1.42
NUP54-212ENST00000513248 PPM1JQ5JR12 505 aa6.19□□□□□ -1.42
NUP54-212ENST00000513248 LCE4AQ5TA78 99 aa6.19□□□□□ -1.42
NUP54-212ENST00000513248 HS2ST1Q7LGA3 356 aa6.19□□□□□ -1.42
NUP54-212ENST00000513248 RNF34Q969K3 372 aa6.19□□□□□ -1.42
NUP54-212ENST00000513248 ISL2Q96A47 359 aa6.19□□□□□ -1.42
NUP54-212ENST00000513248 ELMO3Q96BJ8 720 aa6.19□□□□□ -1.42
NUP54-212ENST00000513248 PICK1Q9NRD5 415 aa6.19□□□□□ -1.42
NUP54-212ENST00000513248 DDX41Q9UJV9 622 aaKnown RBP6.19□□□□□ -1.42
NUP54-212ENST00000513248 ADAMTS6Q9UKP5 1117 aa6.19□□□□□ -1.42
NUP54-212ENST00000513248 PCOLCE2Q9UKZ9 415 aa6.19□□□□□ -1.42
NUP54-212ENST00000513248 GFRA2O00451 464 aa6.18□□□□□ -1.42
NUP54-212ENST00000513248 PF4P02776 101 aa6.18□□□□□ -1.42
NUP54-212ENST00000513248 NTF4P34130 210 aa6.18□□□□□ -1.42
NUP54-212ENST00000513248 CDK5R2Q13319 367 aa6.18□□□□□ -1.42
NUP54-212ENST00000513248 CAMK2GQ13555 558 aaPredicted RBP6.18□□□□□ -1.42
NUP54-212ENST00000513248 PWP1Q13610 501 aa6.18□□□□□ -1.42
NUP54-212ENST00000513248 ZNF124Q15973 351 aa6.18□□□□□ -1.42
NUP54-212ENST00000513248 LRFN4Q6PJG9 635 aa6.18□□□□□ -1.42
NUP54-212ENST00000513248 C12orf40Q86WS4 652 aa6.18□□□□□ -1.42
NUP54-212ENST00000513248 KSR1Q8IVT5 923 aa6.18□□□□□ -1.42
NUP54-212ENST00000513248 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.18□□□□□ -1.42
NUP54-212ENST00000513248 FAM181AQ8N9Y4 354 aa6.18□□□□□ -1.42
NUP54-212ENST00000513248 PI4K2BQ8TCG2 481 aa6.18□□□□□ -1.42
NUP54-212ENST00000513248 HRASLS5Q96KN8 279 aa6.18□□□□□ -1.42
NUP54-212ENST00000513248 SSU72Q9NP77 194 aaKnown RBP6.18□□□□□ -1.42
NUP54-212ENST00000513248 GGT7Q9UJ14 662 aa6.18□□□□□ -1.42
NUP54-212ENST00000513248 TMEM265A0A087WTH1 108 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 E9PSI1 815 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 CILPO75339 1184 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 CEACAM5P06731 702 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 OXCT1P55809 520 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 SEPT6Q14141 434 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 ZBTB37Q5TC79 503 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 FBXL19Q6PCT2 694 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 SLC23A3Q6PIS1 610 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.17□□□□□ -1.42
NUP54-212ENST00000513248 RELL1Q8IUW5 271 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 LRRN4CLQ8ND94 238 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 FLAD1Q8NFF5 587 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 PLPPR2Q96GM1 343 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 SLC38A3Q99624 504 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 ADAMTS1Q9UHI8 967 aa6.17□□□□□ -1.42
NUP54-212ENST00000513248 FANCGO15287 622 aa6.16□□□□□ -1.42
NUP54-212ENST00000513248 TCF3P15923 654 aa6.16□□□□□ -1.42
NUP54-212ENST00000513248 INPP5AQ14642 412 aa6.16□□□□□ -1.42
NUP54-212ENST00000513248 WIPI1Q5MNZ9 446 aaPredicted RBP6.16□□□□□ -1.42
NUP54-212ENST00000513248 ANGEL2Q5VTE6 544 aaKnown RBP6.16□□□□□ -1.42
NUP54-212ENST00000513248 CYFIP1Q7L576 1253 aa6.16□□□□□ -1.42
NUP54-212ENST00000513248 HDXQ7Z353 690 aa6.16□□□□□ -1.42
NUP54-212ENST00000513248 NT5DC4Q86YG4 428 aa6.16□□□□□ -1.42
NUP54-212ENST00000513248 DUSP23Q9BVJ7 150 aa6.16□□□□□ -1.42
NUP54-212ENST00000513248 LRRC3Q9BY71 257 aa6.16□□□□□ -1.42
NUP54-212ENST00000513248 KRTAP4-2Q9BYR5 136 aa6.16□□□□□ -1.42
NUP54-212ENST00000513248 MIR1-1HGQ9H1L0 117 aa6.16□□□□□ -1.42
NUP54-212ENST00000513248 TNKS2Q9H2K2 1166 aa6.16□□□□□ -1.42
NUP54-212ENST00000513248 SNX11Q9Y5W9 270 aa6.16□□□□□ -1.42
NUP54-212ENST00000513248 PRAMEF27A3QJZ7 478 aa6.15□□□□□ -1.42
NUP54-212ENST00000513248 F6X3S4 739 aa6.15□□□□□ -1.42
NUP54-212ENST00000513248 GBP2P32456 591 aaPredicted RBP6.15□□□□□ -1.42
NUP54-212ENST00000513248 EIF4A3P38919 411 aaKnown RBP6.15□□□□□ -1.42
NUP54-212ENST00000513248 CDK8P49336 464 aa6.15□□□□□ -1.42
NUP54-212ENST00000513248 AOC3Q16853 763 aa6.15□□□□□ -1.42
NUP54-212ENST00000513248 ZNF394Q53GI3 561 aa6.15□□□□□ -1.42
NUP54-212ENST00000513248 BNC2Q6ZN30 1099 aaPredicted RBP6.15□□□□□ -1.42
NUP54-212ENST00000513248 UBE3DQ7Z6J8 389 aa6.15□□□□□ -1.42
NUP54-212ENST00000513248 GATAD2BQ8WXI9 593 aa6.15□□□□□ -1.42
NUP54-212ENST00000513248 FAM84AQ96KN4 292 aa6.15□□□□□ -1.42
NUP54-212ENST00000513248 FAM53CQ9NYF3 392 aa6.15□□□□□ -1.42
NUP54-212ENST00000513248 TACC3Q9Y6A5 838 aa6.15□□□□□ -1.42
NUP54-212ENST00000513248 SNCAIPQ9Y6H5 919 aa6.15□□□□□ -1.42
NUP54-212ENST00000513248 U3KQE9 123 aa6.15□□□□□ -1.42
NUP54-212ENST00000513248 PEG3Q9GZU2 1588 aa6.14□□□□□ -1.43
NUP54-212ENST00000513248 NESP48681 1621 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms