RNA–Protein interactions for RNA: ENST00000512665.5

NEDD9-213, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-213ENST00000512665 CCDC174Q6PII3 467 aa12.41□□□□□ -0.42
NEDD9-213ENST00000512665 CCDC84Q86UT8 332 aaPredicted RBP12.41□□□□□ -0.42
NEDD9-213ENST00000512665 KHSRPQ92945 711 aaKnown RBP eCLIP12.41□□□□□ -0.42
NEDD9-213ENST00000512665 RUNDC1Q96C34 613 aa12.41□□□□□ -0.42
NEDD9-213ENST00000512665 EDC3Q96F86 508 aaKnown RBP12.41□□□□□ -0.42
NEDD9-213ENST00000512665 STK31Q9BXU1 1019 aa12.41□□□□□ -0.42
NEDD9-213ENST00000512665 PORCNQ9H237 461 aa12.41□□□□□ -0.42
NEDD9-213ENST00000512665 USP40Q9NVE5 1235 aa12.41□□□□□ -0.42
NEDD9-213ENST00000512665 FLRT1Q9NZU1 646 aa12.41□□□□□ -0.42
NEDD9-213ENST00000512665 RBPJLQ9UBG7 517 aa12.41□□□□□ -0.42
NEDD9-213ENST00000512665 COG5Q9UP83 839 aa12.41□□□□□ -0.42
NEDD9-213ENST00000512665 MYO9BQ13459 2157 aa12.4□□□□□ -0.42
NEDD9-213ENST00000512665 GLRX3O76003 335 aaKnown RBP12.4□□□□□ -0.42
NEDD9-213ENST00000512665 POU3F3P20264 500 aaPredicted RBP12.4□□□□□ -0.42
NEDD9-213ENST00000512665 DIXDC1Q155Q3 683 aa12.4□□□□□ -0.42
NEDD9-213ENST00000512665 CCAR1Q8IX12 1150 aaKnown RBP12.4□□□□□ -0.42
NEDD9-213ENST00000512665 CFAP54Q96N23 3096 aa12.4□□□□□ -0.42
NEDD9-213ENST00000512665 DDTLA6NHG4 134 aaPredicted RBP12.39□□□□□ -0.43
NEDD9-213ENST00000512665 SLC15A5A6NIM6 579 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 CNGA1P29973 690 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 VGLL2Q8N8G2 317 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 TRPV1Q8NER1 839 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 DNAAF4Q8WXU2 420 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 TOX2Q96NM4 488 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.39□□□□□ -0.43
NEDD9-213ENST00000512665 WDR18Q9BV38 432 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 AS3MTQ9HBK9 375 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 MSRAQ9UJ68 235 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 PHF24Q9UPV7 400 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 USP34Q70CQ2 3546 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 ATAD5Q96QE3 1844 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 ZNF236Q9UL36 1845 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 MYH13Q9UKX3 1938 aa12.39□□□□□ -0.43
NEDD9-213ENST00000512665 USP17L5A8MUK1 530 aa12.38□□□□□ -0.43
NEDD9-213ENST00000512665 SEPT4O43236 478 aa12.38□□□□□ -0.43
NEDD9-213ENST00000512665 NPM3O75607 178 aaKnown RBP12.38□□□□□ -0.43
NEDD9-213ENST00000512665 SLC4A2P04920 1241 aa12.38□□□□□ -0.43
NEDD9-213ENST00000512665 ADCYAP1R1P41586 468 aa12.38□□□□□ -0.43
NEDD9-213ENST00000512665 ATP2B2Q01814 1243 aa12.38□□□□□ -0.43
NEDD9-213ENST00000512665 TRIM26Q12899 539 aaPredicted RBP12.38□□□□□ -0.43
NEDD9-213ENST00000512665 Q3C1V9 767 aa12.38□□□□□ -0.43
NEDD9-213ENST00000512665 EPHA10Q5JZY3 1008 aa12.38□□□□□ -0.43
NEDD9-213ENST00000512665 CCDC129Q6ZRS4 1044 aa12.38□□□□□ -0.43
NEDD9-213ENST00000512665 ANKRD33Q7Z3H0 272 aa12.38□□□□□ -0.43
NEDD9-213ENST00000512665 ZSCAN29Q8IWY8 852 aaPredicted RBP12.38□□□□□ -0.43
NEDD9-213ENST00000512665 GAKO14976 1311 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 SALL1Q9NSC2 1324 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 ST18O60284 1047 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 PDE8BO95263 885 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 BACE1P56817 501 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 CCNA1P78396 465 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 PPIGQ13427 754 aaKnown RBP eCLIP12.37□□□□□ -0.43
NEDD9-213ENST00000512665 GRB14Q14449 540 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 LRRC41Q15345 812 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 TMEM240Q5SV17 173 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 OLFML2BQ68BL8 750 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 G2E3Q7L622 706 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 CCDC146Q8IYE0 955 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 PUS3Q9BZE2 481 aaKnown RBP12.37□□□□□ -0.43
NEDD9-213ENST00000512665 SLC28A3Q9HAS3 691 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 TMEM39AQ9NV64 488 aa12.37□□□□□ -0.43
NEDD9-213ENST00000512665 GRXCR1A8MXD5 290 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 C19orf81C9J6K1 198 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 ZBTB22O15209 634 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 PEX10O60683 326 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 TIMP1P01033 207 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 PTPREP23469 700 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 PRDX5P30044 214 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 CYP2C19P33261 490 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 CAP2P40123 477 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 FLIIQ13045 1269 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 MFSD5Q6N075 450 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 PSRC1Q6PGN9 363 aaPredicted RBP12.36□□□□□ -0.43
NEDD9-213ENST00000512665 SLC44A5Q8NCS7 719 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 FBXL18Q96ME1 805 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 TMOD4Q9NZQ9 345 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 RABGAP1Q9Y3P9 1069 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 ZNF521Q96K83 1311 aa12.36□□□□□ -0.43
NEDD9-213ENST00000512665 ROBO3Q96MS0 1386 aa12.35□□□□□ -0.43
NEDD9-213ENST00000512665 LDHBP07195 334 aaKnown RBP12.35□□□□□ -0.43
NEDD9-213ENST00000512665 SLURP2P0DP57 97 aa12.35□□□□□ -0.43
NEDD9-213ENST00000512665 ZEB1P37275 1124 aaPredicted RBP12.35□□□□□ -0.43
NEDD9-213ENST00000512665 FAAP100Q0VG06 881 aa12.35□□□□□ -0.43
NEDD9-213ENST00000512665 MTMR2Q13614 643 aa12.35□□□□□ -0.43
NEDD9-213ENST00000512665 C16orf59Q7L2K0 433 aa12.35□□□□□ -0.43
NEDD9-213ENST00000512665 TSPYL6Q8N831 410 aa12.35□□□□□ -0.43
NEDD9-213ENST00000512665 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.35□□□□□ -0.43
NEDD9-213ENST00000512665 DDX4Q9NQI0 724 aaKnown RBP12.35□□□□□ -0.43
NEDD9-213ENST00000512665 TBX21Q9UL17 535 aa12.35□□□□□ -0.43
NEDD9-213ENST00000512665 ZDBF2Q9HCK1 2354 aa12.34□□□□□ -0.43
NEDD9-213ENST00000512665 GRM8O00222 908 aa12.34□□□□□ -0.43
NEDD9-213ENST00000512665 PQBP1O60828 265 aaKnown RBP12.34□□□□□ -0.43
NEDD9-213ENST00000512665 SLC5A1P13866 664 aa12.34□□□□□ -0.43
NEDD9-213ENST00000512665 FGFR2P21802 821 aa12.34□□□□□ -0.43
NEDD9-213ENST00000512665 PUM3Q15397 648 aaKnown RBP12.34□□□□□ -0.43
NEDD9-213ENST00000512665 NPLOC4Q8TAT6 608 aa12.34□□□□□ -0.43
NEDD9-213ENST00000512665 FERMT2Q96AC1 680 aa12.34□□□□□ -0.43
NEDD9-213ENST00000512665 FAM163AQ96GL9 167 aaPredicted RBP12.34□□□□□ -0.43
NEDD9-213ENST00000512665 CWC22Q9HCG8 908 aaKnown RBP12.34□□□□□ -0.43
NEDD9-213ENST00000512665 IVNS1ABPQ9Y6Y0 642 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms