RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 PABPC4Q13310 644 aaKnown RBP eCLIP11.5□□□□□ -0.57
NUP54-211ENST00000512151 SNX17Q15036 470 aa11.5□□□□□ -0.57
NUP54-211ENST00000512151 SH3D19Q5HYK7 790 aa11.5□□□□□ -0.57
NUP54-211ENST00000512151 AKNAD1Q5T1N1 836 aa11.5□□□□□ -0.57
NUP54-211ENST00000512151 GPRC5AQ8NFJ5 357 aa11.5□□□□□ -0.57
NUP54-211ENST00000512151 WDR66Q8TBY9 1149 aa11.5□□□□□ -0.57
NUP54-211ENST00000512151 LPAR1Q92633 364 aa11.5□□□□□ -0.57
NUP54-211ENST00000512151 PRDM12Q9H4Q4 367 aa11.5□□□□□ -0.57
NUP54-211ENST00000512151 BMP1P13497 986 aa11.49□□□□□ -0.57
NUP54-211ENST00000512151 MAPK4P31152 587 aa11.49□□□□□ -0.57
NUP54-211ENST00000512151 PBX2P40425 430 aa11.49□□□□□ -0.57
NUP54-211ENST00000512151 HERVK_113P62684 666 aa11.49□□□□□ -0.57
NUP54-211ENST00000512151 RALBP1Q15311 655 aa11.49□□□□□ -0.57
NUP54-211ENST00000512151 PLEKHH3Q7Z736 793 aa11.49□□□□□ -0.57
NUP54-211ENST00000512151 KLHDC4Q8TBB5 520 aa11.49□□□□□ -0.57
NUP54-211ENST00000512151 TIFAQ96CG3 184 aa11.49□□□□□ -0.57
NUP54-211ENST00000512151 HCN4Q9Y3Q4 1203 aa11.49□□□□□ -0.57
NUP54-211ENST00000512151 NDUFB9Q9Y6M9 179 aa11.49□□□□□ -0.57
NUP54-211ENST00000512151 ATAD5Q96QE3 1844 aa11.49□□□□□ -0.57
NUP54-211ENST00000512151 MYH2Q9UKX2 1941 aa11.48□□□□□ -0.57
NUP54-211ENST00000512151 CNGA1P29973 690 aa11.48□□□□□ -0.57
NUP54-211ENST00000512151 ERVK-9P63128 1117 aa11.48□□□□□ -0.57
NUP54-211ENST00000512151 ERVK-24P63145 666 aa11.48□□□□□ -0.57
NUP54-211ENST00000512151 IRX3P78415 501 aaPredicted RBP11.48□□□□□ -0.57
NUP54-211ENST00000512151 MAP2K5Q13163 448 aa11.48□□□□□ -0.57
NUP54-211ENST00000512151 PICALMQ13492 652 aa11.48□□□□□ -0.57
NUP54-211ENST00000512151 POTEGQ6S5H5 508 aa11.48□□□□□ -0.57
NUP54-211ENST00000512151 C11orf16Q9NQ32 467 aa11.48□□□□□ -0.57
NUP54-211ENST00000512151 UTYO14607 1347 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 GAKO14976 1311 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 KIF16BQ96L93 1317 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.47□□□□□ -0.57
NUP54-211ENST00000512151 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.47□□□□□ -0.57
NUP54-211ENST00000512151 GRXCR1A8MXD5 290 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 TBC1D12O60347 775 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 IGHA2P01877 340 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 LDHBP07195 334 aaKnown RBP11.47□□□□□ -0.57
NUP54-211ENST00000512151 HOXA7P31268 230 aaPredicted RBP11.47□□□□□ -0.57
NUP54-211ENST00000512151 CYP2C19P33261 490 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 JAG1P78504 1218 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 TFF2Q03403 129 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 TLE2Q04725 743 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 MTMR2Q13614 643 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 MFSD14CQ5VZR4 134 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 ANO1Q5XXA6 986 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 ANKRD44Q8N8A2 993 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 NPLOC4Q8TAT6 608 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 FERMT2Q96AC1 680 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 GAS2L1Q99501 681 aaPredicted RBP11.47□□□□□ -0.57
NUP54-211ENST00000512151 PLXNA1Q9UIW2 1896 aa11.47□□□□□ -0.57
NUP54-211ENST00000512151 CNMDO75829 334 aa11.46□□□□□ -0.57
NUP54-211ENST00000512151 CYBAP13498 195 aa11.46□□□□□ -0.57
NUP54-211ENST00000512151 ADCYAP1R1P41586 468 aa11.46□□□□□ -0.57
NUP54-211ENST00000512151 SHROOM1Q2M3G4 852 aaPredicted RBP11.46□□□□□ -0.57
NUP54-211ENST00000512151 KHSRPQ92945 711 aaKnown RBP eCLIP11.46□□□□□ -0.574e-7■■■■□ 23.6
NUP54-211ENST00000512151 EDC3Q96F86 508 aaKnown RBP11.46□□□□□ -0.57
NUP54-211ENST00000512151 PAGR1Q9BTK6 254 aa11.46□□□□□ -0.57
NUP54-211ENST00000512151 OSBPL5Q9H0X9 879 aaPredicted RBP11.46□□□□□ -0.57
NUP54-211ENST00000512151 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.46□□□□□ -0.57
NUP54-211ENST00000512151 MYBBP1AQ9BQG0 1328 aaKnown RBP11.46□□□□□ -0.58
NUP54-211ENST00000512151 USP17L5A8MUK1 530 aa11.45□□□□□ -0.58
NUP54-211ENST00000512151 MSCO60682 206 aa11.45□□□□□ -0.58
NUP54-211ENST00000512151 IFIT1P09914 478 aaKnown RBP11.45□□□□□ -0.58
NUP54-211ENST00000512151 CAP2P40123 477 aa11.45□□□□□ -0.58
NUP54-211ENST00000512151 KCNQ1P51787 676 aa11.45□□□□□ -0.58
NUP54-211ENST00000512151 PUM3Q15397 648 aaKnown RBP11.45□□□□□ -0.58
NUP54-211ENST00000512151 IL27Q8NEV9 243 aa11.45□□□□□ -0.58
NUP54-211ENST00000512151 PBX4Q9BYU1 374 aa11.45□□□□□ -0.58
NUP54-211ENST00000512151 BICC1Q9H694 974 aaKnown RBP11.45□□□□□ -0.58
NUP54-211ENST00000512151 C9orf78Q9NZ63 289 aaPredicted RBP11.45□□□□□ -0.58
NUP54-211ENST00000512151 CXXC1Q9P0U4 656 aaPredicted RBP11.45□□□□□ -0.58
NUP54-211ENST00000512151 CHD9Q3L8U1 2897 aa11.45□□□□□ -0.58
NUP54-211ENST00000512151 CACNA1FO60840 1977 aa11.45□□□□□ -0.58
NUP54-211ENST00000512151 FAM86C2PA6NEL3 165 aa11.44□□□□□ -0.58
NUP54-211ENST00000512151 KIAA0355O15063 1070 aa11.44□□□□□ -0.58
NUP54-211ENST00000512151 NBPF7P0C2Y1 421 aaPredicted RBP11.44□□□□□ -0.58
NUP54-211ENST00000512151 IGFBP4P22692 258 aa11.44□□□□□ -0.58
NUP54-211ENST00000512151 BACE1P56817 501 aa11.44□□□□□ -0.58
NUP54-211ENST00000512151 RHBDL3P58872 404 aa11.44□□□□□ -0.58
NUP54-211ENST00000512151 RABL6Q3YEC7 729 aaPredicted RBP11.44□□□□□ -0.58
NUP54-211ENST00000512151 TMEM31Q5JXX7 168 aa11.44□□□□□ -0.58
NUP54-211ENST00000512151 WDR18Q9BV38 432 aa11.44□□□□□ -0.58
NUP54-211ENST00000512151 SALL1Q9NSC2 1324 aa11.44□□□□□ -0.58
NUP54-211ENST00000512151 SLC15A5A6NIM6 579 aa11.43□□□□□ -0.58
NUP54-211ENST00000512151 KBTBD13C9JR72 458 aa11.43□□□□□ -0.58
NUP54-211ENST00000512151 MYCNP04198 464 aaPredicted RBP11.43□□□□□ -0.58
NUP54-211ENST00000512151 BTDP43251 543 aa11.43□□□□□ -0.58
NUP54-211ENST00000512151 ATP2B2Q01814 1243 aa11.43□□□□□ -0.58
NUP54-211ENST00000512151 FPGSQ05932 587 aa11.43□□□□□ -0.58
NUP54-211ENST00000512151 LRRC41Q15345 812 aa11.43□□□□□ -0.58
NUP54-211ENST00000512151 C1orf53Q5VUE5 145 aa11.43□□□□□ -0.58
NUP54-211ENST00000512151 C16orf59Q7L2K0 433 aa11.43□□□□□ -0.58
NUP54-211ENST00000512151 CCAR1Q8IX12 1150 aaKnown RBP11.43□□□□□ -0.58
NUP54-211ENST00000512151 ARRDC4Q8NCT1 418 aa11.43□□□□□ -0.58
NUP54-211ENST00000512151 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.43□□□□□ -0.583e-9■□□□□ 10
NUP54-211ENST00000512151 TBC1D2Q9BYX2 928 aa11.43□□□□□ -0.58
NUP54-211ENST00000512151 VAMP4O75379 141 aa11.42□□□□□ -0.58
NUP54-211ENST00000512151 ALDH1L1O75891 902 aa11.42□□□□□ -0.58
NUP54-211ENST00000512151 CLTBP09497 229 aa11.42□□□□□ -0.58
NUP54-211ENST00000512151 HOXC6P09630 235 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms