RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 TREML2Q5T2D2 321 aa17.48■□□□□ 0.39
HMGCS1-203ENST00000507004 SLC9C2Q5TAH2 1124 aa17.48■□□□□ 0.39
HMGCS1-203ENST00000507004 TATDN1Q6P1N9 297 aa17.48■□□□□ 0.39
HMGCS1-203ENST00000507004 CCDC84Q86UT8 332 aaPredicted RBP17.48■□□□□ 0.39
HMGCS1-203ENST00000507004 ANKRD13CQ8N6S4 541 aa17.48■□□□□ 0.39
HMGCS1-203ENST00000507004 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.48■□□□□ 0.39
HMGCS1-203ENST00000507004 ANTXR1Q9H6X2 564 aa17.48■□□□□ 0.39
HMGCS1-203ENST00000507004 DNAJC18Q9H819 358 aa17.48■□□□□ 0.39
HMGCS1-203ENST00000507004 FLT3LGP49771 235 aa17.47■□□□□ 0.39
HMGCS1-203ENST00000507004 USP14P54578 494 aa17.47■□□□□ 0.39
HMGCS1-203ENST00000507004 MTMR2Q13614 643 aa17.47■□□□□ 0.39
HMGCS1-203ENST00000507004 RRP1BQ14684 758 aaKnown RBP17.47■□□□□ 0.39
HMGCS1-203ENST00000507004 USP17L2Q6R6M4 530 aa17.47■□□□□ 0.39
HMGCS1-203ENST00000507004 SIRT2Q8IXJ6 389 aa17.47■□□□□ 0.39
HMGCS1-203ENST00000507004 RIOK1Q9BRS2 568 aaKnown RBP17.47■□□□□ 0.39
HMGCS1-203ENST00000507004 ASCC2Q9H1I8 757 aaPredicted RBP17.47■□□□□ 0.39
HMGCS1-203ENST00000507004 CABP5Q9NP86 173 aa17.47■□□□□ 0.39
HMGCS1-203ENST00000507004 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.47■□□□□ 0.39
HMGCS1-203ENST00000507004 MORF4L1Q9UBU8 362 aa17.47■□□□□ 0.39
HMGCS1-203ENST00000507004 SAP30BPQ9UHR5 308 aaKnown RBP17.47■□□□□ 0.39
HMGCS1-203ENST00000507004 CDK5RAP2Q96SN8 1893 aa17.47■□□□□ 0.39
HMGCS1-203ENST00000507004 MGAMO43451 1857 aa17.46■□□□□ 0.39
HMGCS1-203ENST00000507004 MYO5AQ9Y4I1 1855 aaKnown RBP17.46■□□□□ 0.39
HMGCS1-203ENST00000507004 ADCY3O60266 1144 aa17.46■□□□□ 0.39
HMGCS1-203ENST00000507004 PDE6AP16499 860 aa17.46■□□□□ 0.39
HMGCS1-203ENST00000507004 ATP5JP18859 108 aa17.46■□□□□ 0.39
HMGCS1-203ENST00000507004 LRRCC1Q9C099 1032 aa17.46■□□□□ 0.39
HMGCS1-203ENST00000507004 MYH1P12882 1939 aa17.45■□□□□ 0.38
HMGCS1-203ENST00000507004 SIPA1L1O43166 1804 aa17.45■□□□□ 0.38
HMGCS1-203ENST00000507004 APBB1O00213 710 aa17.45■□□□□ 0.38
HMGCS1-203ENST00000507004 GOLIM4O00461 696 aa17.45■□□□□ 0.38
HMGCS1-203ENST00000507004 ECM2O94769 699 aaPredicted RBP17.45■□□□□ 0.38
HMGCS1-203ENST00000507004 POLR3DP05423 398 aaPredicted RBP17.45■□□□□ 0.38
HMGCS1-203ENST00000507004 GJA8P48165 433 aa17.45■□□□□ 0.38
HMGCS1-203ENST00000507004 CERKLQ49MI3 558 aaPredicted RBP17.45■□□□□ 0.38
HMGCS1-203ENST00000507004 ZSCAN25Q6NSZ9 544 aa17.45■□□□□ 0.38
HMGCS1-203ENST00000507004 C12orf42Q96LP6 360 aa17.45■□□□□ 0.38
HMGCS1-203ENST00000507004 DNAJC2Q99543 621 aaKnown RBP17.45■□□□□ 0.38
HMGCS1-203ENST00000507004 RNF208Q9H0X6 261 aa17.45■□□□□ 0.38
HMGCS1-203ENST00000507004 PAG1Q9NWQ8 432 aa17.45■□□□□ 0.38
HMGCS1-203ENST00000507004 ZSWIM8A7E2V4 1837 aa17.44■□□□□ 0.38
HMGCS1-203ENST00000507004 GDF11O95390 407 aa17.44■□□□□ 0.38
HMGCS1-203ENST00000507004 CCL5P13501 91 aa17.44■□□□□ 0.38
HMGCS1-203ENST00000507004 AMOTL1Q8IY63 956 aa17.44■□□□□ 0.38
HMGCS1-203ENST00000507004 DDRGK1Q96HY6 314 aa17.44■□□□□ 0.38
HMGCS1-203ENST00000507004 FEZ1Q99689 392 aa17.44■□□□□ 0.38
HMGCS1-203ENST00000507004 NDUFB9Q9Y6M9 179 aa17.44■□□□□ 0.38
HMGCS1-203ENST00000507004 ZNF532Q9HCE3 1301 aa17.44■□□□□ 0.38
HMGCS1-203ENST00000507004 GH2P01242 217 aa17.43■□□□□ 0.38
HMGCS1-203ENST00000507004 MTFR1Q15390 333 aa17.43■□□□□ 0.38
HMGCS1-203ENST00000507004 ABCB5Q2M3G0 1257 aa17.43■□□□□ 0.38
HMGCS1-203ENST00000507004 GPRC5AQ8NFJ5 357 aa17.43■□□□□ 0.38
HMGCS1-203ENST00000507004 SOCS4Q8WXH5 440 aa17.43■□□□□ 0.38
HMGCS1-203ENST00000507004 HAUS7Q99871 368 aa17.43■□□□□ 0.38
HMGCS1-203ENST00000507004 HTATIP2Q9BUP3 242 aa17.43■□□□□ 0.38
HMGCS1-203ENST00000507004 ATP8A2Q9NTI2 1148 aa17.43■□□□□ 0.38
HMGCS1-203ENST00000507004 MCM9Q9NXL9 1143 aa17.43■□□□□ 0.38
HMGCS1-203ENST00000507004 SWAP70Q9UH65 585 aa17.43■□□□□ 0.38
HMGCS1-203ENST00000507004 GABRQQ9UN88 632 aa17.43■□□□□ 0.38
HMGCS1-203ENST00000507004 HTTP42858 3142 aa17.42■□□□□ 0.38
HMGCS1-203ENST00000507004 MYCP01106 439 aaPredicted RBP17.42■□□□□ 0.38
HMGCS1-203ENST00000507004 MAPK4P31152 587 aa17.42■□□□□ 0.38
HMGCS1-203ENST00000507004 HERVK_113P62684 666 aa17.42■□□□□ 0.38
HMGCS1-203ENST00000507004 UBE3CQ15386 1083 aa17.42■□□□□ 0.38
HMGCS1-203ENST00000507004 CCAR1Q8IX12 1150 aaKnown RBP17.42■□□□□ 0.38
HMGCS1-203ENST00000507004 TRMT44Q8IYL2 757 aaKnown RBP17.42■□□□□ 0.38
HMGCS1-203ENST00000507004 GPATCH3Q96I76 525 aa17.42■□□□□ 0.38
HMGCS1-203ENST00000507004 KIAA1683Q9H0B3 1180 aa17.42■□□□□ 0.38
HMGCS1-203ENST00000507004 TCRBV5S4A2TA0A5A2 114 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 USP17L15C9J2P7 530 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 USP17L13C9JLJ4 530 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 USP17L11C9JVI0 530 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 USP17L18D6R9N7 530 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 USP17L22D6RA61 530 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 USP17L17D6RBQ6 530 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 USP17L19D6RCP7 530 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 USP17L20D6RJB6 530 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 INHAP05111 366 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 ADD2P35612 726 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 CCNA1P78396 465 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 GABPAQ06546 454 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 USP17L24Q0WX57 530 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 BOLA2Q9H3K6 86 aa17.41■□□□□ 0.38
HMGCS1-203ENST00000507004 GLRX3O76003 335 aaKnown RBP17.4■□□□□ 0.38
HMGCS1-203ENST00000507004 SGPL1O95470 568 aa17.4■□□□□ 0.38
HMGCS1-203ENST00000507004 HMGCRP04035 888 aa17.4■□□□□ 0.38
HMGCS1-203ENST00000507004 JAG1P78504 1218 aa17.4■□□□□ 0.38
HMGCS1-203ENST00000507004 RAB3GAP1Q15042 981 aa17.4■□□□□ 0.38
HMGCS1-203ENST00000507004 U2AF1L4Q8WU68 220 aaKnown RBP17.4■□□□□ 0.38
HMGCS1-203ENST00000507004 P2RX7Q99572 595 aaKnown RBP17.4■□□□□ 0.38
HMGCS1-203ENST00000507004 NUDT12Q9BQG2 462 aa17.4■□□□□ 0.38
HMGCS1-203ENST00000507004 DCP1AQ9NPI6 582 aaPredicted RBP17.4■□□□□ 0.38
HMGCS1-203ENST00000507004 EMILIN3Q9NT22 766 aa17.4■□□□□ 0.38
HMGCS1-203ENST00000507004 XRCC5P13010 732 aaKnown RBP17.39■□□□□ 0.37
HMGCS1-203ENST00000507004 SHMT1P34896 483 aa17.39■□□□□ 0.37
HMGCS1-203ENST00000507004 PLCD1P51178 756 aa17.39■□□□□ 0.37
HMGCS1-203ENST00000507004 LRRFIP1Q32MZ4 808 aaKnown RBP17.39■□□□□ 0.37
HMGCS1-203ENST00000507004 CCDC17Q96LX7 622 aa17.39■□□□□ 0.37
HMGCS1-203ENST00000507004 DCTPP1Q9H773 170 aa17.39■□□□□ 0.37
HMGCS1-203ENST00000507004 SH2D4AQ9H788 454 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms