RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 KRT23Q9C075 422 aa18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 KCNH3Q9ULD8 1083 aa18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 CICQ96RK0 1608 aaPredicted RBP18.49■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 KIF2AO00139 706 aaPredicted RBP18.49■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 MMP1P03956 469 aa18.49■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 BMP6P22004 513 aa18.49■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 STAG1Q8WVM7 1258 aa18.49■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 TMEM51Q9NW97 253 aa18.49■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 PCDHA5Q9Y5H7 936 aa18.49■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 PNPLA7Q6ZV29 1317 aa18.49■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 FOXN1O15353 648 aa18.49■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 DHX8Q14562 1220 aaKnown RBP18.49■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 TBC1D9BQ66K14 1250 aa18.49■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 MFSD6Q6ZSS7 791 aa18.49■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 PDE4BQ07343 736 aa18.48■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 SLC15A2Q16348 729 aa18.48■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 ELOA2Q8IYF1 753 aaPredicted RBP18.48■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 KRI1Q8N9T8 703 aaKnown RBP18.48■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 ZKSCAN3Q9BRR0 538 aa18.48■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 KCNJ14Q9UNX9 436 aa18.48■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 ZPR1O75312 459 aa18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 BCAMP50895 628 aa18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 UBASH3AP57075 661 aa18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 GRIN1Q05586 938 aa18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 SPECC1Q5M775 1068 aa18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 RC3H1Q5TC82 1133 aaKnown RBP18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 DIS3L2Q8IYB7 885 aaKnown RBP18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 CNNM3Q8NE01 707 aa18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 WASF1Q92558 559 aa18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 ERO1AQ96HE7 468 aa18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 TMX1Q9H3N1 280 aa18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 FBXO2Q9UK22 296 aaPredicted RBP18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 L2HGDHQ9H9P8 463 aa18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 NIP7Q9Y221 180 aaKnown RBP eCLIP18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 SLC4A4Q9Y6R1 1079 aa18.47■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 R3HDM1Q15032 1099 aaKnown RBP18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 RTN1Q16799 776 aa18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 RRP12Q5JTH9 1297 aaKnown RBP18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 MPHOSPH8Q99549 860 aa18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 FANCLQ9NW38 375 aa18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 OGFRQ9NZT2 677 aa18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 V9GYY5 206 aaPredicted RBP18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 TMEM232C9JQI7 657 aa18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 CBFA2T2O43439 604 aa18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 SLU7O95391 586 aaKnown RBP18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 GNAT2P19087 354 aa18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 PTPREP23469 700 aa18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 WTAPQ15007 396 aa18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 VSTM4Q8IW00 320 aa18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 CRACR2BQ8N4Y2 399 aaPredicted RBP18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 FOXP1Q9H334 677 aaPredicted RBP18.46■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 SERPINC1P01008 464 aa18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 TDO2P48775 406 aa18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 CCDC93Q567U6 631 aa18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 OLFM4Q6UX06 510 aa18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 CMTR1Q8N1G2 835 aaKnown RBP18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 INTS13Q9NVM9 706 aa18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 DDX41Q9UJV9 622 aaKnown RBP18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 MYO1BO43795 1136 aa18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 KMT5BQ4FZB7 885 aa18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 SYT10Q6XYQ8 523 aa18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 MTA3Q9BTC8 594 aa18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 UTP14AQ9BVJ6 771 aaKnown RBP18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 STK32BQ9NY57 414 aa18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 NARFQ9UHQ1 456 aa18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 MAN1B1Q9UKM7 699 aa18.45■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 COL4A1P02462 1669 aa18.44■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 MYH6P13533 1939 aa18.44■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 GYS1P13807 737 aa18.44■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 SAFBQ15424 915 aaKnown RBP eCLIP18.44■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 MIGA1Q8NAN2 632 aa18.44■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 ZNF397Q8NF99 534 aaPredicted RBP18.44■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 NACAP1Q9BZK3 213 aa18.44■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 DEXIO95424 95 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 PRR29P0C7W0 189 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 SARSP49591 514 aaKnown RBP18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 NR5A1Q13285 461 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 ELF2Q15723 593 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 PTPN21Q16825 1174 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 CFAP100Q494V2 611 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 RILPL1Q5EBL4 403 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 NT5DC1Q5TFE4 455 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 TRIM22Q8IYM9 498 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 CCDC82Q8N4S0 544 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 SHISA4Q96DD7 197 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 TOMM22Q9NS69 142 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 PCDHB6Q9Y5E3 794 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 RGPD3A6NKT7 1758 aaPredicted RBP18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 RGPD4Q7Z3J3 1758 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 GOLGA8FQ08AF8 430 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 GOLGA8DPQ0D2H9 430 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 ADGRA1Q86SQ6 560 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 FANCBQ8NB91 859 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 OXER1Q8TDS5 423 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 SERTAD1Q9UHV2 236 aa18.43■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 NRDCO43847 1150 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 RCAN1P53805 252 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 PPARAQ07869 468 aa18.42■□□□□ 0.54
MSH5-SAPCD1-208ENST00000498473 SART3Q15020 963 aaKnown RBP18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms