RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 KRT2P35908 639 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 SCRN1Q12765 414 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 CFAP100Q494V2 611 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 MCTP2Q6DN12 878 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 SASS6Q6UVJ0 657 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 FERMT3Q86UX7 667 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 EPB41L4AQ9HCS5 686 aaPredicted RBP9.66□□□□□ -0.86
USP54-215ENST00000497106 NEDD4P46934 1319 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 C6orf50Q9HD87 102 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 RTN4Q9NQC3 1192 aaKnown RBP9.66□□□□□ -0.86
USP54-215ENST00000497106 A0A0G2JLW4 131 aa9.65□□□□□ -0.86
USP54-215ENST00000497106 PRDM1O75626 825 aa9.65□□□□□ -0.86
USP54-215ENST00000497106 NSUN7Q8NE18 718 aaKnown RBP9.65□□□□□ -0.86
USP54-215ENST00000497106 CUL5Q93034 780 aa9.65□□□□□ -0.86
USP54-215ENST00000497106 ZKSCAN3Q9BRR0 538 aa9.65□□□□□ -0.86
USP54-215ENST00000497106 ZSWIM5Q9P217 1185 aa9.65□□□□□ -0.86
USP54-215ENST00000497106 GJA3Q9Y6H8 435 aa9.65□□□□□ -0.86
USP54-215ENST00000497106 IFNAR1P17181 557 aa9.65□□□□□ -0.86
USP54-215ENST00000497106 CCDC183Q5T5S1 534 aa9.65□□□□□ -0.86
USP54-215ENST00000497106 FMNL1O95466 1100 aaPredicted RBP9.65□□□□□ -0.87
USP54-215ENST00000497106 ASPRV1Q53RT3 343 aa9.65□□□□□ -0.87
USP54-215ENST00000497106 STOX1Q6ZVD7 989 aa9.65□□□□□ -0.87
USP54-215ENST00000497106 AMIGO3Q86WK7 504 aa9.65□□□□□ -0.87
USP54-215ENST00000497106 NAT10Q9H0A0 1025 aaKnown RBP9.65□□□□□ -0.87
USP54-215ENST00000497106 COL24A1Q17RW2 1714 aa9.65□□□□□ -0.87
USP54-215ENST00000497106 GAKO14976 1311 aa9.65□□□□□ -0.87
USP54-215ENST00000497106 CDK8P49336 464 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 SLFNL1Q499Z3 407 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 CAVIN1Q6NZI2 390 aaKnown RBP9.64□□□□□ -0.87
USP54-215ENST00000497106 PNMA1Q8ND90 353 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 MAP3K14Q99558 947 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 FEZ1Q99689 392 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 ZMYND15Q9H091 742 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 GOPCQ9HD26 462 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 NRDCO43847 1150 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 CERKLQ49MI3 558 aaPredicted RBP9.64□□□□□ -0.87
USP54-215ENST00000497106 RILPL1Q5EBL4 403 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 ARHGAP27Q6ZUM4 889 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 ZDHHC15Q96MV8 337 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 FLT1P17948 1338 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 SLC4A8Q2Y0W8 1093 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 GPATCH4Q5T3I0 446 aaKnown RBP9.64□□□□□ -0.87
USP54-215ENST00000497106 AGXT2Q9BYV1 514 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 NUP62CLQ9H1M0 184 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 KANSL2Q9H9L4 492 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP54-215ENST00000497106 TCP11L1Q9NUJ3 509 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 TCEAL9Q9UHQ7 104 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 TTLL1O95922 423 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 MRE11P49959 708 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 DPY19L2Q6NUT2 758 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 TXNRD3Q86VQ6 643 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 HERC5Q9UII4 1024 aaKnown RBP9.64□□□□□ -0.87
USP54-215ENST00000497106 MTMR6Q9Y217 621 aa9.64□□□□□ -0.87
USP54-215ENST00000497106 FAM47AQ5JRC9 791 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 CLEC17AQ6ZS10 378 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 SMARCC2Q8TAQ2 1214 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 LY9Q9HBG7 655 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 ZNF277Q9NRM2 450 aaPredicted RBP9.63□□□□□ -0.87
USP54-215ENST00000497106 PTMAP06454 111 aaKnown RBP9.63□□□□□ -0.87
USP54-215ENST00000497106 C16orf86Q6ZW13 317 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 RAB11FIP4Q86YS3 637 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 NEDD1Q8NHV4 660 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 RAB34Q9BZG1 259 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 OSBPL5Q9H0X9 879 aaPredicted RBP9.63□□□□□ -0.87
USP54-215ENST00000497106 TSPY26PQ9H489 355 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 NCOA5Q9HCD5 579 aaKnown RBP9.63□□□□□ -0.87
USP54-215ENST00000497106 GINM1Q9NU53 330 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 C10orf71Q711Q0 1435 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 SBF2Q86WG5 1849 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 RAD17O75943 681 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 GUCY1B3Q02153 619 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 SDF4Q9BRK5 362 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 AS3MTQ9HBK9 375 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 NPM3O75607 178 aaKnown RBP9.63□□□□□ -0.87
USP54-215ENST00000497106 CCDC192P0DO97 292 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 EVCP57679 992 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 CYB5R4Q7L1T6 521 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 USP48Q86UV5 1035 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 EHD4Q9H223 541 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 TNMDQ9H2S6 317 aa9.63□□□□□ -0.87
USP54-215ENST00000497106 PRPF3O43395 683 aaKnown RBP9.62□□□□□ -0.87
USP54-215ENST00000497106 NAPAP54920 295 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 TMEM179Q6ZVK1 233 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 APOBEC3FQ8IUX4 373 aaKnown RBP9.62□□□□□ -0.87
USP54-215ENST00000497106 RGPD3A6NKT7 1758 aaPredicted RBP9.62□□□□□ -0.87
USP54-215ENST00000497106 RGPD4Q7Z3J3 1758 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 JAK2O60674 1132 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 ABCB5Q2M3G0 1257 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 KRT40Q6A162 431 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 CCDC82Q8N4S0 544 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 DACH1Q9UI36 760 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 DDX60Q8IY21 1712 aaKnown RBP9.62□□□□□ -0.87
USP54-215ENST00000497106 YEATS4O95619 227 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 CAVIN2O95810 425 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 SH3GLB2Q9NR46 395 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 C4AP0C0L4 1744 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 GOLGA6L19H0YKK7 550 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 CEBPZQ03701 1054 aaKnown RBP9.62□□□□□ -0.87
USP54-215ENST00000497106 TCP10Q12799 353 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms