RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 NETO1Q8TDF5 533 aa9.72□□□□□ -0.85
SF3B1-212ENST00000496458 ACSF2Q96CM8 615 aaPredicted RBP9.72□□□□□ -0.85
SF3B1-212ENST00000496458 TMEM87BQ96K49 555 aa9.72□□□□□ -0.85
SF3B1-212ENST00000496458 ADAM30Q9UKF2 790 aa9.72□□□□□ -0.85
SF3B1-212ENST00000496458 SUPT16HQ9Y5B9 1047 aaKnown RBP9.72□□□□□ -0.85
SF3B1-212ENST00000496458 CEACAM5P06731 702 aa9.71□□□□□ -0.86
SF3B1-212ENST00000496458 GP2P55259 537 aaKnown RBP9.71□□□□□ -0.86
SF3B1-212ENST00000496458 FANCCQ00597 558 aa9.71□□□□□ -0.86
SF3B1-212ENST00000496458 REC114Q7Z4M0 266 aa9.71□□□□□ -0.86
SF3B1-212ENST00000496458 ZNF296Q8WUU4 475 aaPredicted RBP9.71□□□□□ -0.86
SF3B1-212ENST00000496458 PRDM5Q9NQX1 630 aaPredicted RBP9.71□□□□□ -0.86
SF3B1-212ENST00000496458 KCNQ5Q9NR82 932 aa9.71□□□□□ -0.86
SF3B1-212ENST00000496458 ADAMTS1Q9UHI8 967 aa9.71□□□□□ -0.86
SF3B1-212ENST00000496458 TPX2Q9ULW0 747 aaKnown RBP9.71□□□□□ -0.86
SF3B1-212ENST00000496458 POLR3KQ9Y2Y1 108 aaPredicted RBP9.71□□□□□ -0.86
SF3B1-212ENST00000496458 SLC6A19Q695T7 634 aa9.7□□□□□ -0.86
SF3B1-212ENST00000496458 LETMD1Q6P1Q0 360 aa9.7□□□□□ -0.86
SF3B1-212ENST00000496458 MRRFQ96E11 262 aaKnown RBP9.7□□□□□ -0.86
SF3B1-212ENST00000496458 MKNK2Q9HBH9 465 aa9.7□□□□□ -0.86
SF3B1-212ENST00000496458 VAMP1P23763 118 aa9.69□□□□□ -0.86
SF3B1-212ENST00000496458 IFI16Q16666 785 aaKnown RBP9.69□□□□□ -0.86
SF3B1-212ENST00000496458 CWF19L2Q2TBE0 894 aaKnown RBP9.69□□□□□ -0.86
SF3B1-212ENST00000496458 MCATQ8IVS2 390 aaKnown RBP9.69□□□□□ -0.86
SF3B1-212ENST00000496458 FLCNQ8NFG4 579 aa9.69□□□□□ -0.86
SF3B1-212ENST00000496458 RIN3Q8TB24 985 aa9.69□□□□□ -0.86
SF3B1-212ENST00000496458 METTL5Q9NRN9 209 aaKnown RBP9.69□□□□□ -0.86
SF3B1-212ENST00000496458 GNAT3A8MTJ3 354 aa9.68□□□□□ -0.86
SF3B1-212ENST00000496458 IGF2BP3O00425 579 aaKnown RBP eCLIP9.68□□□□□ -0.86
SF3B1-212ENST00000496458 GREM1O60565 184 aa9.68□□□□□ -0.86
SF3B1-212ENST00000496458 NFXL1Q6ZNB6 911 aa9.68□□□□□ -0.86
SF3B1-212ENST00000496458 FAM13CQ8NE31 585 aa9.68□□□□□ -0.86
SF3B1-212ENST00000496458 REV1Q9UBZ9 1251 aa9.68□□□□□ -0.86
SF3B1-212ENST00000496458 PLAGL2Q9UPG8 496 aa9.68□□□□□ -0.86
SF3B1-212ENST00000496458 MAPK8IP1Q9UQF2 711 aa9.68□□□□□ -0.86
SF3B1-212ENST00000496458 OAS3Q9Y6K5 1087 aaKnown RBP9.68□□□□□ -0.86
SF3B1-212ENST00000496458 CNTNAP4Q9C0A0 1308 aa9.67□□□□□ -0.86
SF3B1-212ENST00000496458 UNCXA6NJT0 531 aa9.67□□□□□ -0.86
SF3B1-212ENST00000496458 HTR3BO95264 441 aa9.67□□□□□ -0.86
SF3B1-212ENST00000496458 CRKP46108 304 aa9.67□□□□□ -0.86
SF3B1-212ENST00000496458 ZNF394Q53GI3 561 aa9.67□□□□□ -0.86
SF3B1-212ENST00000496458 TMEM201Q5SNT2 666 aa9.67□□□□□ -0.86
SF3B1-212ENST00000496458 USP48Q86UV5 1035 aa9.67□□□□□ -0.86
SF3B1-212ENST00000496458 BCL7CQ8WUZ0 217 aaPredicted RBP9.67□□□□□ -0.86
SF3B1-212ENST00000496458 RNF34Q969K3 372 aa9.67□□□□□ -0.86
SF3B1-212ENST00000496458 LRRC3Q9BY71 257 aa9.67□□□□□ -0.86
SF3B1-212ENST00000496458 UBP1Q9NZI7 540 aa9.67□□□□□ -0.86
SF3B1-212ENST00000496458 KLHL3Q9UH77 587 aa9.67□□□□□ -0.86
SF3B1-212ENST00000496458 SLC5A6Q9Y289 635 aa9.67□□□□□ -0.86
SF3B1-212ENST00000496458 PCDHGB7Q9Y5F8 929 aa9.67□□□□□ -0.86
SF3B1-212ENST00000496458 ROBO2Q9HCK4 1378 aa9.66□□□□□ -0.86
SF3B1-212ENST00000496458 PRR36Q9H6K5 1346 aa9.66□□□□□ -0.86
SF3B1-212ENST00000496458 UPK3BL1B0FP48 263 aa9.66□□□□□ -0.86
SF3B1-212ENST00000496458 UPK3BL2E5RIL1 263 aa9.66□□□□□ -0.86
SF3B1-212ENST00000496458 BNIP3Q12983 259 aa9.66□□□□□ -0.86
SF3B1-212ENST00000496458 SFRP5Q5T4F7 317 aa9.66□□□□□ -0.86
SF3B1-212ENST00000496458 ZNF574Q6ZN55 896 aaPredicted RBP9.66□□□□□ -0.86
SF3B1-212ENST00000496458 CDH24Q86UP0 819 aa9.66□□□□□ -0.86
SF3B1-212ENST00000496458 TP53INP2Q8IXH6 220 aa9.66□□□□□ -0.86
SF3B1-212ENST00000496458 MISP3Q96FF7 219 aa9.66□□□□□ -0.86
SF3B1-212ENST00000496458 BRMS1Q9HCU9 246 aa9.66□□□□□ -0.86
SF3B1-212ENST00000496458 KIAA1522Q9P206 1035 aaPredicted RBP9.66□□□□□ -0.86
SF3B1-212ENST00000496458 TMEM265A0A087WTH1 108 aa9.65□□□□□ -0.86
SF3B1-212ENST00000496458 SCAMP3O14828 347 aaKnown RBP9.65□□□□□ -0.86
SF3B1-212ENST00000496458 YARSP54577 528 aaKnown RBP9.65□□□□□ -0.86
SF3B1-212ENST00000496458 APOBRQ0VD83 1088 aa9.65□□□□□ -0.86
SF3B1-212ENST00000496458 ZNF746Q6NUN9 644 aaPredicted RBP9.65□□□□□ -0.86
SF3B1-212ENST00000496458 KIAA0825Q8IV33 1275 aa9.65□□□□□ -0.86
SF3B1-212ENST00000496458 STK11IPQ8N1F8 1099 aa9.65□□□□□ -0.86
SF3B1-212ENST00000496458 HRASLS5Q96KN8 279 aa9.65□□□□□ -0.86
SF3B1-212ENST00000496458 FBXL18Q96ME1 805 aa9.65□□□□□ -0.86
SF3B1-212ENST00000496458 SPON2Q9BUD6 331 aa9.65□□□□□ -0.86
SF3B1-212ENST00000496458 PRR33A8MZF0 331 aa9.64□□□□□ -0.87
SF3B1-212ENST00000496458 AOC3Q16853 763 aa9.64□□□□□ -0.87
SF3B1-212ENST00000496458 NKPD1Q17RQ9 610 aa9.64□□□□□ -0.87
SF3B1-212ENST00000496458 SEZ6Q53EL9 994 aa9.64□□□□□ -0.87
SF3B1-212ENST00000496458 SPACA3Q8IXA5 215 aa9.64□□□□□ -0.87
SF3B1-212ENST00000496458 TNKS2Q9H2K2 1166 aa9.64□□□□□ -0.87
SF3B1-212ENST00000496458 PAK6Q9NQU5 681 aaPredicted RBP9.64□□□□□ -0.87
SF3B1-212ENST00000496458 PCDHB14Q9Y5E9 798 aa9.64□□□□□ -0.87
SF3B1-212ENST00000496458 RBAK-RBAKDNI3L0D1 243 aa9.63□□□□□ -0.87
SF3B1-212ENST00000496458 DNAJA2O60884 412 aa9.63□□□□□ -0.87
SF3B1-212ENST00000496458 CD96P40200 585 aa9.63□□□□□ -0.87
SF3B1-212ENST00000496458 PRKCQQ04759 706 aa9.63□□□□□ -0.87
SF3B1-212ENST00000496458 SPRED2Q7Z698 418 aa9.63□□□□□ -0.87
SF3B1-212ENST00000496458 WFDC3Q8IUB2 231 aa9.63□□□□□ -0.87
SF3B1-212ENST00000496458 ABI1Q8IZP0 508 aa9.63□□□□□ -0.87
SF3B1-212ENST00000496458 CYB5D2Q8WUJ1 264 aa9.63□□□□□ -0.87
SF3B1-212ENST00000496458 VAV3Q9UKW4 847 aa9.63□□□□□ -0.87
SF3B1-212ENST00000496458 FAM155AB1AL88 458 aaPredicted RBP9.62□□□□□ -0.87
SF3B1-212ENST00000496458 CHURC1-FNTBB4DL54 471 aa9.62□□□□□ -0.87
SF3B1-212ENST00000496458 CBX7O95931 251 aa9.62□□□□□ -0.87
SF3B1-212ENST00000496458 SLFN12Q8IYM2 578 aa9.62□□□□□ -0.87
SF3B1-212ENST00000496458 MFSD4AQ8N468 514 aa9.62□□□□□ -0.87
SF3B1-212ENST00000496458 DNAJB8Q8NHS0 232 aa9.62□□□□□ -0.87
SF3B1-212ENST00000496458 EAF1Q96JC9 268 aaPredicted RBP9.62□□□□□ -0.87
SF3B1-212ENST00000496458 ZNF865P0CJ78 1059 aaPredicted RBP9.61□□□□□ -0.87
SF3B1-212ENST00000496458 CYP7A1P22680 504 aa9.61□□□□□ -0.87
SF3B1-212ENST00000496458 MCM4P33991 863 aa9.61□□□□□ -0.87
SF3B1-212ENST00000496458 ETV3P41162 512 aa9.61□□□□□ -0.87
SF3B1-212ENST00000496458 GK5Q6ZS86 529 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms