RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	USP17L5	A8MUK1	530 aa		11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	PATL2	C9JE40	543 aa	Known RBP	11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	MPHOSPH10	O00566	681 aa	Known RBP	11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	GH2	P01242	217 aa		11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	CETP	P11597	493 aa		11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	GSPT1	P15170	499 aa	Known RBP	11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	GNAT2	P19087	354 aa		11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	SHMT1	P34896	483 aa		11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	INHBE	P58166	350 aa		11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	MCMDC2	Q4G0Z9	681 aa		11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	C12orf60	Q5U649	245 aa		11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	GADL1	Q6ZQY3	521 aa		11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	IFNL3	Q8IZI9	196 aa		11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	HELLS	Q9NRZ9	838 aa		11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	DIAPH3	Q9NSV4	1193 aa		11.76	□□□□□ -0.53
CALD1-223	ENST00000496024	PHIP	Q8WWQ0	1821 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	ASNS	P08243	561 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	GABPA	Q06546	454 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	SPP2	Q13103	211 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	RAB3GAP1	Q15042	981 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	ABCB5	Q2M3G0	1257 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	VPS53	Q5VIR6	699 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	OTUD7B	Q6GQQ9	843 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	TATDN1	Q6P1N9	297 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	CWC27	Q6UX04	472 aa	Known RBP	11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	NACAP1	Q9BZK3	213 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	NAPB	Q9H115	298 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	R3HDML	Q9H3Y0	253 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	ARPP21	Q9UBL0	812 aa	Predicted RBP	11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	ZBTB21	Q9ULJ3	1066 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	KCNH4	Q9UQ05	1017 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	AFG3L2	Q9Y4W6	797 aa		11.75	□□□□□ -0.53
CALD1-223	ENST00000496024	TESPA1	A2RU30	521 aa	Predicted RBP	11.74	□□□□□ -0.53
CALD1-223	ENST00000496024	BTBD19	C9JJ37	291 aa		11.74	□□□□□ -0.53
CALD1-223	ENST00000496024	CXCL11	O14625	94 aa		11.74	□□□□□ -0.53
CALD1-223	ENST00000496024	CDK8	P49336	464 aa		11.74	□□□□□ -0.53
CALD1-223	ENST00000496024	SBK1	Q52WX2	424 aa		11.74	□□□□□ -0.53
CALD1-223	ENST00000496024	GIMAP6	Q6P9H5	292 aa		11.74	□□□□□ -0.53
CALD1-223	ENST00000496024	ZNF589	Q86UQ0	364 aa	Predicted RBP	11.74	□□□□□ -0.53
CALD1-223	ENST00000496024	FAM43A	Q8N2R8	423 aa		11.74	□□□□□ -0.53
CALD1-223	ENST00000496024	ZNF280C	Q8ND82	737 aa		11.74	□□□□□ -0.53
CALD1-223	ENST00000496024	CABP5	Q9NP86	173 aa		11.74	□□□□□ -0.53
CALD1-223	ENST00000496024	SAGE1	Q9NXZ1	904 aa		11.74	□□□□□ -0.53
CALD1-223	ENST00000496024	SWAP70	Q9UH65	585 aa		11.74	□□□□□ -0.53
CALD1-223	ENST00000496024	PTPRF	P10586	1907 aa		11.74	□□□□□ -0.53
CALD1-223	ENST00000496024		A0A0G2JLL6	359 aa	Predicted RBP	11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	HIP1	O00291	1037 aa		11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	ALDH1A1	P00352	501 aa		11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	LAMB1	P07942	1786 aa		11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	AKR1B1	P15121	316 aa		11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	HMGCS2	P54868	508 aa		11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	DGKZ	Q13574	1117 aa		11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	SEPT2	Q15019	361 aa		11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	TAF1C	Q15572	869 aa	Predicted RBP	11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	CCDC171	Q6TFL3	1326 aa		11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	PRRT2	Q7Z6L0	340 aa	Predicted RBP	11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	MKNK2	Q9HBH9	465 aa		11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	AS3MT	Q9HBK9	375 aa		11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	PPP4R2	Q9NY27	417 aa		11.73	□□□□□ -0.53
CALD1-223	ENST00000496024	FOXP2	O15409	715 aa		11.72	□□□□□ -0.53
CALD1-223	ENST00000496024	PRDM1	O75626	825 aa		11.72	□□□□□ -0.53
CALD1-223	ENST00000496024	CRHR2	Q13324	411 aa		11.72	□□□□□ -0.53
CALD1-223	ENST00000496024	MTMR2	Q13614	643 aa		11.72	□□□□□ -0.53
CALD1-223	ENST00000496024	MOGS	Q13724	837 aa		11.72	□□□□□ -0.53
CALD1-223	ENST00000496024	ZYX	Q15942	572 aa	Known RBP	11.72	□□□□□ -0.53
CALD1-223	ENST00000496024	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.72	□□□□□ -0.53
CALD1-223	ENST00000496024	C16orf86	Q6ZW13	317 aa		11.72	□□□□□ -0.53
CALD1-223	ENST00000496024	FASTKD5	Q7L8L6	764 aa	Known RBP	11.72	□□□□□ -0.53
CALD1-223	ENST00000496024	TICAM2	Q86XR7	235 aa		11.72	□□□□□ -0.53
CALD1-223	ENST00000496024	FEZ1	Q99689	392 aa		11.72	□□□□□ -0.53
CALD1-223	ENST00000496024	PRDM10	Q9NQV6	1147 aa		11.72	□□□□□ -0.53
CALD1-223	ENST00000496024	USP17L10	C9JJH3	530 aa		11.71	□□□□□ -0.53
CALD1-223	ENST00000496024	PDHX	O00330	501 aa		11.71	□□□□□ -0.53
CALD1-223	ENST00000496024	HSPD1	P10809	573 aa	Known RBP	11.71	□□□□□ -0.53
CALD1-223	ENST00000496024	GUCY1A2	P33402	732 aa		11.71	□□□□□ -0.53
CALD1-223	ENST00000496024	MFAP1	P55081	439 aa	Known RBP	11.71	□□□□□ -0.53
CALD1-223	ENST00000496024	CTDSPL2	Q05D32	466 aa		11.71	□□□□□ -0.53
CALD1-223	ENST00000496024	PPARA	Q07869	468 aa		11.71	□□□□□ -0.53
CALD1-223	ENST00000496024	CLEC10A	Q8IUN9	316 aa		11.71	□□□□□ -0.53
CALD1-223	ENST00000496024	ACER1	Q8TDN7	264 aa		11.71	□□□□□ -0.53
CALD1-223	ENST00000496024	WDR18	Q9BV38	432 aa		11.71	□□□□□ -0.53
CALD1-223	ENST00000496024	TBC1D2	Q9BYX2	928 aa		11.71	□□□□□ -0.53
CALD1-223	ENST00000496024	ZFYVE28	Q9HCC9	887 aa		11.71	□□□□□ -0.53
CALD1-223	ENST00000496024	GINM1	Q9NU53	330 aa		11.71	□□□□□ -0.53
CALD1-223	ENST00000496024	GPR25	O00155	361 aa		11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	ECM2	O94769	699 aa	Predicted RBP	11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	FGA	P02671	866 aa		11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	CHML	P26374	656 aa		11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	BACE1	P56817	501 aa		11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	HAND2	P61296	217 aa		11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	ATP2B2	Q01814	1243 aa		11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	TREML2	Q5T2D2	321 aa		11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	ERICH6B	Q5W0A0	696 aa		11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	GPAT2	Q6NUI2	795 aa		11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	TMEM179	Q6ZVK1	233 aa		11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	ANKRD23	Q86SG2	305 aa		11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	ZNF444	Q8N0Y2	327 aa	Predicted RBP	11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.7	□□□□□ -0.54
CALD1-223	ENST00000496024	CCDC17	Q96LX7	622 aa		11.7	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms