RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 NKG7Q16617 165 aa8.16□□□□□ -1.1
SMC4-223ENST00000493695 LETMD1Q6P1Q0 360 aa8.16□□□□□ -1.1
SMC4-223ENST00000493695 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.16□□□□□ -1.1
SMC4-223ENST00000493695 SPOCD1Q6ZMY3 1216 aa8.16□□□□□ -1.1
SMC4-223ENST00000493695 ANKLE2Q86XL3 938 aa8.16□□□□□ -1.1
SMC4-223ENST00000493695 MFSD2AQ8NA29 543 aa8.16□□□□□ -1.1
SMC4-223ENST00000493695 UBE2FQ969M7 185 aa8.16□□□□□ -1.1
SMC4-223ENST00000493695 C12orf49Q9H741 205 aa8.16□□□□□ -1.1
SMC4-223ENST00000493695 CNTNAP4Q9C0A0 1308 aa8.15□□□□□ -1.1
SMC4-223ENST00000493695 SLBPQ14493 270 aaKnown RBP eCLIP8.15□□□□□ -1.1
SMC4-223ENST00000493695 SCARA3Q6AZY7 606 aa8.15□□□□□ -1.1
SMC4-223ENST00000493695 TTBK2Q6IQ55 1244 aa8.15□□□□□ -1.1
SMC4-223ENST00000493695 ZNF746Q6NUN9 644 aaPredicted RBP8.15□□□□□ -1.1
SMC4-223ENST00000493695 HID1Q8IV36 788 aa8.15□□□□□ -1.1
SMC4-223ENST00000493695 RIN3Q8TB24 985 aa8.15□□□□□ -1.1
SMC4-223ENST00000493695 ZSCAN18Q8TBC5 510 aaPredicted RBP8.15□□□□□ -1.1
SMC4-223ENST00000493695 WNT10AQ9GZT5 417 aa8.15□□□□□ -1.1
SMC4-223ENST00000493695 NSUN3Q9H649 340 aaKnown RBP8.15□□□□□ -1.1
SMC4-223ENST00000493695 SEMA3GQ9NS98 782 aa8.15□□□□□ -1.1
SMC4-223ENST00000493695 SLAMF8Q9P0V8 285 aa8.15□□□□□ -1.1
SMC4-223ENST00000493695 CYP7A1P22680 504 aa8.14□□□□□ -1.11
SMC4-223ENST00000493695 GRK4P32298 578 aa8.14□□□□□ -1.11
SMC4-223ENST00000493695 FMR1Q06787 632 aaKnown RBP eCLIP8.14□□□□□ -1.11
SMC4-223ENST00000493695 PRAMEF13Q5VWM6 474 aa8.14□□□□□ -1.11
SMC4-223ENST00000493695 BHLHE22Q8NFJ8 381 aaPredicted RBP8.14□□□□□ -1.11
SMC4-223ENST00000493695 NFIBO00712 420 aa8.13□□□□□ -1.11
SMC4-223ENST00000493695 RAC2P15153 192 aa8.13□□□□□ -1.11
SMC4-223ENST00000493695 GDNFP39905 211 aa8.13□□□□□ -1.11
SMC4-223ENST00000493695 CDK8P49336 464 aa8.13□□□□□ -1.11
SMC4-223ENST00000493695 CDH24Q86UP0 819 aa8.13□□□□□ -1.11
SMC4-223ENST00000493695 CCDC120Q96HB5 630 aa8.13□□□□□ -1.11
SMC4-223ENST00000493695 CAPN6Q9Y6Q1 641 aa8.13□□□□□ -1.11
SMC4-223ENST00000493695 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.12□□□□□ -1.11
SMC4-223ENST00000493695 CCDC85BQ15834 202 aaPredicted RBP8.12□□□□□ -1.11
SMC4-223ENST00000493695 MAP3K11Q16584 847 aa8.12□□□□□ -1.11
SMC4-223ENST00000493695 SV2BQ7L1I2 683 aa8.12□□□□□ -1.11
SMC4-223ENST00000493695 LRRC56Q8IYG6 542 aaPredicted RBP8.12□□□□□ -1.11
SMC4-223ENST00000493695 ASB16Q96NS5 453 aa8.12□□□□□ -1.11
SMC4-223ENST00000493695 ALPK1Q96QP1 1244 aa8.12□□□□□ -1.11
SMC4-223ENST00000493695 DPH2Q9BQC3 489 aaPredicted RBP8.12□□□□□ -1.11
SMC4-223ENST00000493695 SNCAIPQ9Y6H5 919 aa8.12□□□□□ -1.11
SMC4-223ENST00000493695 TSPAN15O95858 294 aa8.11□□□□□ -1.11
SMC4-223ENST00000493695 LDHBP07195 334 aaKnown RBP8.11□□□□□ -1.11
SMC4-223ENST00000493695 ZNF865P0CJ78 1059 aaPredicted RBP8.11□□□□□ -1.11
SMC4-223ENST00000493695 CFPP27918 469 aa8.11□□□□□ -1.11
SMC4-223ENST00000493695 SEPT6Q14141 434 aa8.11□□□□□ -1.11
SMC4-223ENST00000493695 TTC6Q86TZ1 520 aa8.11□□□□□ -1.11
SMC4-223ENST00000493695 IVNS1ABPQ9Y6Y0 642 aa8.11□□□□□ -1.11
SMC4-223ENST00000493695 TMEM253P0C7T8 217 aa8.1□□□□□ -1.11
SMC4-223ENST00000493695 HK2P52789 917 aa8.1□□□□□ -1.11
SMC4-223ENST00000493695 FBXO15Q8NCQ5 510 aaPredicted RBP8.1□□□□□ -1.11
SMC4-223ENST00000493695 ABHD4Q8TB40 342 aa8.1□□□□□ -1.11
SMC4-223ENST00000493695 GAL3ST3Q96A11 431 aa8.1□□□□□ -1.11
SMC4-223ENST00000493695 DCP1AQ9NPI6 582 aaPredicted RBP8.1□□□□□ -1.11
SMC4-223ENST00000493695 ST14Q9Y5Y6 855 aa8.1□□□□□ -1.11
SMC4-223ENST00000493695 PGRP06401 933 aa8.09□□□□□ -1.11
SMC4-223ENST00000493695 C1QTNF9P0C862 333 aa8.09□□□□□ -1.11
SMC4-223ENST00000493695 EIF4BP23588 611 aaKnown RBP8.09□□□□□ -1.11
SMC4-223ENST00000493695 KCNK12Q9HB15 430 aa8.09□□□□□ -1.11
SMC4-223ENST00000493695 C19orf73Q9NVV2 129 aa8.09□□□□□ -1.11
SMC4-223ENST00000493695 PCDHB5Q9Y5E4 795 aa8.09□□□□□ -1.11
SMC4-223ENST00000493695 RBAK-RBAKDNI3L0D1 243 aa8.08□□□□□ -1.12
SMC4-223ENST00000493695 CST3P01034 146 aaPredicted RBP8.08□□□□□ -1.12
SMC4-223ENST00000493695 P4HBP07237 508 aaKnown RBP8.08□□□□□ -1.12
SMC4-223ENST00000493695 TNK2Q07912 1038 aa8.08□□□□□ -1.12
SMC4-223ENST00000493695 KRTAP19-4Q3LI73 84 aa8.08□□□□□ -1.12
SMC4-223ENST00000493695 LCE4AQ5TA78 99 aa8.08□□□□□ -1.12
SMC4-223ENST00000493695 C22orf34Q6ZV56 151 aa8.08□□□□□ -1.12
SMC4-223ENST00000493695 THAP5Q7Z6K1 395 aa8.08□□□□□ -1.12
SMC4-223ENST00000493695 CREG2Q8IUH2 290 aa8.08□□□□□ -1.12
SMC4-223ENST00000493695 ZSCAN22P10073 491 aaPredicted RBP8.07□□□□□ -1.12
SMC4-223ENST00000493695 KIR3DL1P43629 444 aa8.07□□□□□ -1.12
SMC4-223ENST00000493695 ANKRD24Q8TF21 1146 aa8.07□□□□□ -1.12
SMC4-223ENST00000493695 MYLIPQ8WY64 445 aa8.07□□□□□ -1.12
SMC4-223ENST00000493695 EPB41L4BQ9H329 900 aa8.07□□□□□ -1.12
SMC4-223ENST00000493695 DNAJC25-GNG10A0A024R161 153 aa8.06□□□□□ -1.12
SMC4-223ENST00000493695 CAP2P40123 477 aa8.06□□□□□ -1.12
SMC4-223ENST00000493695 RALGPS1Q5JS13 557 aa8.06□□□□□ -1.12
SMC4-223ENST00000493695 JARID2Q92833 1246 aaPredicted RBP8.06□□□□□ -1.12
SMC4-223ENST00000493695 COX4I2Q96KJ9 171 aa8.06□□□□□ -1.12
SMC4-223ENST00000493695 MIR1-1HGQ9H1L0 117 aa8.06□□□□□ -1.12
SMC4-223ENST00000493695 NPIPB6E9PJ23 425 aa8.05□□□□□ -1.12
SMC4-223ENST00000493695 ETV3P41162 512 aa8.05□□□□□ -1.12
SMC4-223ENST00000493695 ERVFC1P60507 584 aa8.05□□□□□ -1.12
SMC4-223ENST00000493695 DIEXFQ68CQ4 756 aaKnown RBP8.05□□□□□ -1.12
SMC4-223ENST00000493695 FRMD6Q96NE9 622 aa8.05□□□□□ -1.12
SMC4-223ENST00000493695 TMEM59LQ9UK28 342 aa8.05□□□□□ -1.12
SMC4-223ENST00000493695 TCAF2A6NFQ2 919 aa8.04□□□□□ -1.12
SMC4-223ENST00000493695 WASH4PA8MWX3 477 aa8.04□□□□□ -1.12
SMC4-223ENST00000493695 TPP2P29144 1249 aaPredicted RBP8.04□□□□□ -1.12
SMC4-223ENST00000493695 PDE4BQ07343 736 aa8.04□□□□□ -1.12
SMC4-223ENST00000493695 ATG14Q6ZNE5 492 aa8.04□□□□□ -1.12
SMC4-223ENST00000493695 TMPRSS7Q7RTY8 843 aa8.04□□□□□ -1.12
SMC4-223ENST00000493695 SYTL4Q96C24 671 aaPredicted RBP8.04□□□□□ -1.12
SMC4-223ENST00000493695 TMEM87BQ96K49 555 aa8.04□□□□□ -1.12
SMC4-223ENST00000493695 TJP2Q9UDY2 1190 aa8.04□□□□□ -1.12
SMC4-223ENST00000493695 GNA15P30679 374 aa8.03□□□□□ -1.12
SMC4-223ENST00000493695 RPS26P62854 115 aaKnown RBP8.03□□□□□ -1.12
SMC4-223ENST00000493695 ERICH6Q7L0X2 663 aa8.03□□□□□ -1.12
SMC4-223ENST00000493695 KCNN1Q92952 543 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms