RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 ADGRD1Q6QNK2 874 aa13.02□□□□□ -0.33
COL6A3-214ENST00000493608 NOL10Q9BSC4 688 aaKnown RBP13.02□□□□□ -0.33
COL6A3-214ENST00000493608 ATRNL1Q5VV63 1379 aa13.02□□□□□ -0.33
COL6A3-214ENST00000493608 CDK5RAP2Q96SN8 1893 aa13.02□□□□□ -0.33
COL6A3-214ENST00000493608 BTBD19C9JJ37 291 aa13.01□□□□□ -0.33
COL6A3-214ENST00000493608 TK2O00142 265 aa13.01□□□□□ -0.33
COL6A3-214ENST00000493608 EVI5O60447 810 aa13.01□□□□□ -0.33
COL6A3-214ENST00000493608 IDH1O75874 414 aaKnown RBP13.01□□□□□ -0.33
COL6A3-214ENST00000493608 CETPP11597 493 aa13.01□□□□□ -0.33
COL6A3-214ENST00000493608 CYP7A1P22680 504 aa13.01□□□□□ -0.33
COL6A3-214ENST00000493608 DYNLL1P63167 89 aaKnown RBP13.01□□□□□ -0.33
COL6A3-214ENST00000493608 PPATQ06203 517 aa13.01□□□□□ -0.33
COL6A3-214ENST00000493608 TAF1CQ15572 869 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-214ENST00000493608 NOM1Q5C9Z4 860 aaKnown RBP13.01□□□□□ -0.33
COL6A3-214ENST00000493608 CLASRPQ8N2M8 674 aaKnown RBP13.01□□□□□ -0.33
COL6A3-214ENST00000493608 CD99L2Q8TCZ2 262 aa13.01□□□□□ -0.33
COL6A3-214ENST00000493608 TGFBRAP1Q8WUH2 860 aa13.01□□□□□ -0.33
COL6A3-214ENST00000493608 KIF1BPQ96EK5 621 aa13.01□□□□□ -0.33
COL6A3-214ENST00000493608 OSBPL5Q9H0X9 879 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-214ENST00000493608 CHMP4BQ9H444 224 aaKnown RBP13.01□□□□□ -0.33
COL6A3-214ENST00000493608 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-214ENST00000493608 BAG3O95817 575 aa13□□□□□ -0.33
COL6A3-214ENST00000493608 IFIT2P09913 472 aaKnown RBP13□□□□□ -0.33
COL6A3-214ENST00000493608 CAP1Q01518 475 aa13□□□□□ -0.33
COL6A3-214ENST00000493608 MAP3K10Q02779 954 aa13□□□□□ -0.33
COL6A3-214ENST00000493608 NOL9Q5SY16 702 aaKnown RBP13□□□□□ -0.33
COL6A3-214ENST00000493608 CCDC84Q86UT8 332 aaPredicted RBP13□□□□□ -0.33
COL6A3-214ENST00000493608 MAPKAPK5Q8IW41 473 aa13□□□□□ -0.33
COL6A3-214ENST00000493608 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13□□□□□ -0.33
COL6A3-214ENST00000493608 ZFYVE28Q9HCC9 887 aa13□□□□□ -0.33
COL6A3-214ENST00000493608 HPS5Q9UPZ3 1129 aa13□□□□□ -0.33
COL6A3-214ENST00000493608 TRIM17Q9Y577 477 aa13□□□□□ -0.33
COL6A3-214ENST00000493608 ZHX2Q9Y6X8 837 aa13□□□□□ -0.33
COL6A3-214ENST00000493608 MAST2Q6P0Q8 1798 aa12.99□□□□□ -0.33
COL6A3-214ENST00000493608 HRO43593 1189 aa12.99□□□□□ -0.33
COL6A3-214ENST00000493608 SMARCA5O60264 1052 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-214ENST00000493608 PTPRAP18433 802 aa12.99□□□□□ -0.33
COL6A3-214ENST00000493608 PPP4CP60510 307 aa12.99□□□□□ -0.33
COL6A3-214ENST00000493608 SP3Q02447 781 aa12.99□□□□□ -0.33
COL6A3-214ENST00000493608 SLC4A8Q2Y0W8 1093 aa12.99□□□□□ -0.33
COL6A3-214ENST00000493608 OTOP1Q7RTM1 612 aa12.99□□□□□ -0.33
COL6A3-214ENST00000493608 SCYL3Q8IZE3 742 aa12.99□□□□□ -0.33
COL6A3-214ENST00000493608 MAGEB6Q8N7X4 407 aa12.99□□□□□ -0.33
COL6A3-214ENST00000493608 ZNF454Q8N9F8 522 aa12.99□□□□□ -0.33
COL6A3-214ENST00000493608 MIGA1Q8NAN2 632 aa12.99□□□□□ -0.33
COL6A3-214ENST00000493608 PICK1Q9NRD5 415 aa12.99□□□□□ -0.33
COL6A3-214ENST00000493608 RAB11FIP3O75154 756 aa12.98□□□□□ -0.33
COL6A3-214ENST00000493608 MAP4K4O95819 1239 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-214ENST00000493608 SOX10P56693 466 aa12.98□□□□□ -0.33
COL6A3-214ENST00000493608 CAMK2BQ13554 666 aa12.98□□□□□ -0.33
COL6A3-214ENST00000493608 PKN2Q16513 984 aaKnown RBP12.98□□□□□ -0.33
COL6A3-214ENST00000493608 EDC3Q96F86 508 aaKnown RBP12.98□□□□□ -0.33
COL6A3-214ENST00000493608 SAP30BPQ9UHR5 308 aaKnown RBP12.98□□□□□ -0.33
COL6A3-214ENST00000493608 KCNH4Q9UQ05 1017 aa12.98□□□□□ -0.33
COL6A3-214ENST00000493608 DOCK1Q14185 1865 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 FOCADQ5VW36 1801 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 PHIPQ8WWQ0 1821 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 PDHXO00330 501 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 GOLIM4O00461 696 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 CTNND1O60716 968 aaKnown RBP12.97□□□□□ -0.33
COL6A3-214ENST00000493608 MAP3K12Q12852 859 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 MOGSQ13724 837 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 RRP1BQ14684 758 aaKnown RBP12.97□□□□□ -0.33
COL6A3-214ENST00000493608 FBXO46Q6PJ61 603 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-214ENST00000493608 ERO1AQ96HE7 468 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 DNAJC2Q99543 621 aaKnown RBP12.97□□□□□ -0.33
COL6A3-214ENST00000493608 BOLA2Q9H3K6 86 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 PALD1Q9ULE6 856 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 AFG3L2Q9Y4W6 797 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 MYH1P12882 1939 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 ZSWIM8A7E2V4 1837 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 ATAD5Q96QE3 1844 aa12.97□□□□□ -0.33
COL6A3-214ENST00000493608 FLT1P17948 1338 aa12.96□□□□□ -0.33
COL6A3-214ENST00000493608 TRIM75PA6NK02 468 aa12.96□□□□□ -0.33
COL6A3-214ENST00000493608 CXCL11O14625 94 aa12.96□□□□□ -0.33
COL6A3-214ENST00000493608 TLR2O60603 784 aa12.96□□□□□ -0.33
COL6A3-214ENST00000493608 GADL1Q6ZQY3 521 aa12.96□□□□□ -0.33
COL6A3-214ENST00000493608 KCNK17Q96T54 332 aa12.96□□□□□ -0.33
COL6A3-214ENST00000493608 EFCC1Q9HA90 598 aa12.96□□□□□ -0.33
COL6A3-214ENST00000493608 CPA4Q9UI42 421 aa12.96□□□□□ -0.33
COL6A3-214ENST00000493608 SIPA1L1O43166 1804 aa12.96□□□□□ -0.33
COL6A3-214ENST00000493608 PTPRFP10586 1907 aa12.96□□□□□ -0.34
COL6A3-214ENST00000493608 USP5P45974 858 aa12.95□□□□□ -0.34
COL6A3-214ENST00000493608 SLFNL1Q499Z3 407 aa12.95□□□□□ -0.34
COL6A3-214ENST00000493608 SLC9C2Q5TAH2 1124 aa12.95□□□□□ -0.34
COL6A3-214ENST00000493608 GPAT2Q6NUI2 795 aa12.95□□□□□ -0.34
COL6A3-214ENST00000493608 ANKRD23Q86SG2 305 aa12.95□□□□□ -0.34
COL6A3-214ENST00000493608 SPRYD3Q8NCJ5 442 aa12.95□□□□□ -0.34
COL6A3-214ENST00000493608 LRRCC1Q9C099 1032 aa12.95□□□□□ -0.34
COL6A3-214ENST00000493608 ARHGAP39Q9C0H5 1083 aa12.95□□□□□ -0.34
COL6A3-214ENST00000493608 DHX36Q9H2U1 1008 aaKnown RBP12.95□□□□□ -0.34
COL6A3-214ENST00000493608 PI4KBQ9UBF8 816 aa12.95□□□□□ -0.34
COL6A3-214ENST00000493608 PTPN22Q9Y2R2 807 aa12.95□□□□□ -0.34
COL6A3-214ENST00000493608 A0A0G2JLL6 359 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-214ENST00000493608 CYP2C8P10632 490 aa12.94□□□□□ -0.34
COL6A3-214ENST00000493608 PDE6AP16499 860 aa12.94□□□□□ -0.34
COL6A3-214ENST00000493608 CAP2P40123 477 aa12.94□□□□□ -0.34
COL6A3-214ENST00000493608 RGS19P49795 217 aa12.94□□□□□ -0.34
COL6A3-214ENST00000493608 RRP1P56182 461 aaKnown RBP12.94□□□□□ -0.34
COL6A3-214ENST00000493608 JAG1P78504 1218 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms