RNA–Protein interactions for RNA: ENST00000493553.1

PRPF3-206, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 2

Gene PRPF3, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-206ENST00000493553 UBE3CQ15386 1083 aa11.87□□□□□ -0.51
PRPF3-206ENST00000493553 TMEM132AQ24JP5 1023 aa11.87□□□□□ -0.51
PRPF3-206ENST00000493553 CC2D2BQ6DHV5 1058 aa11.87□□□□□ -0.51
PRPF3-206ENST00000493553 VGLL2Q8N8G2 317 aa11.87□□□□□ -0.51
PRPF3-206ENST00000493553 INSM2Q96T92 566 aaPredicted RBP11.87□□□□□ -0.51
PRPF3-206ENST00000493553 ZNF395Q9H8N7 513 aaPredicted RBP11.87□□□□□ -0.51
PRPF3-206ENST00000493553 CCNL1Q9UK58 526 aaPredicted RBP11.87□□□□□ -0.51
PRPF3-206ENST00000493553 KCNQ2O43526 872 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 BRD1O95696 1058 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 MBD3O95983 291 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 NCLP19338 710 aaKnown RBP11.86□□□□□ -0.51
PRPF3-206ENST00000493553 FGFR2P21802 821 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 WASHC4Q2M389 1173 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 TPTE2Q6XPS3 522 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 ANKRD18AQ8IVF6 992 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 IRF7Q92985 503 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 NEK1Q96PY6 1258 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 SETDB2Q96T68 719 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 PCDHB11Q9Y5F2 797 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 THSD7AQ9UPZ6 1657 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 NUP98P52948 1817 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 ATRNO75882 1429 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 RIC1Q4ADV7 1423 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 AFF2P51816 1311 aa11.86□□□□□ -0.51
PRPF3-206ENST00000493553 HCLS1P14317 486 aaPredicted RBP11.85□□□□□ -0.51
PRPF3-206ENST00000493553 VEGFBP49765 207 aa11.85□□□□□ -0.51
PRPF3-206ENST00000493553 MAP3K12Q12852 859 aa11.85□□□□□ -0.51
PRPF3-206ENST00000493553 UBE4AQ14139 1066 aa11.85□□□□□ -0.51
PRPF3-206ENST00000493553 KLHL40Q2TBA0 621 aa11.85□□□□□ -0.51
PRPF3-206ENST00000493553 SLC27A3Q5K4L6 730 aa11.85□□□□□ -0.51
PRPF3-206ENST00000493553 FAM196AQ6ZSG2 479 aa11.85□□□□□ -0.51
PRPF3-206ENST00000493553 FBXL16Q8N461 479 aa11.85□□□□□ -0.51
PRPF3-206ENST00000493553 LINC00116Q8NCU8 138 aa11.85□□□□□ -0.51
PRPF3-206ENST00000493553 ANKRD2Q9GZV1 360 aa11.85□□□□□ -0.51
PRPF3-206ENST00000493553 WDR19Q8NEZ3 1342 aa11.85□□□□□ -0.51
PRPF3-206ENST00000493553 GNAT2P19087 354 aa11.84□□□□□ -0.51
PRPF3-206ENST00000493553 FGD1P98174 961 aa11.84□□□□□ -0.51
PRPF3-206ENST00000493553 VAC14Q08AM6 782 aa11.84□□□□□ -0.51
PRPF3-206ENST00000493553 IMMTQ16891 758 aaKnown RBP11.84□□□□□ -0.51
PRPF3-206ENST00000493553 CCDC102BQ68D86 513 aa11.84□□□□□ -0.51
PRPF3-206ENST00000493553 DHX32Q7L7V1 743 aaKnown RBP11.84□□□□□ -0.51
PRPF3-206ENST00000493553 ZNF589Q86UQ0 364 aaPredicted RBP11.84□□□□□ -0.51
PRPF3-206ENST00000493553 NLRP3Q96P20 1036 aa11.84□□□□□ -0.51
PRPF3-206ENST00000493553 LLPHQ9BRT6 129 aaKnown RBP11.84□□□□□ -0.51
PRPF3-206ENST00000493553 POLMQ9NP87 494 aaPredicted RBP11.84□□□□□ -0.51
PRPF3-206ENST00000493553 BSDC1Q9NW68 430 aaPredicted RBP11.84□□□□□ -0.51
PRPF3-206ENST00000493553 LRP5O75197 1615 aa11.83□□□□□ -0.52
PRPF3-206ENST00000493553 FIGNL2A6NMB9 653 aa11.83□□□□□ -0.52
PRPF3-206ENST00000493553 HSPD1P10809 573 aaKnown RBP11.83□□□□□ -0.52
PRPF3-206ENST00000493553 ADORA1P30542 326 aa11.83□□□□□ -0.52
PRPF3-206ENST00000493553 TRAPPC3LQ5T215 181 aa11.83□□□□□ -0.52
PRPF3-206ENST00000493553 NBPF5PQ86XG9 351 aaPredicted RBP11.83□□□□□ -0.52
PRPF3-206ENST00000493553 ZGPATQ8N5A5 531 aaKnown RBP11.83□□□□□ -0.52
PRPF3-206ENST00000493553 RNF217Q8TC41 542 aa11.83□□□□□ -0.52
PRPF3-206ENST00000493553 SYAP1Q96A49 352 aaPredicted RBP11.83□□□□□ -0.52
PRPF3-206ENST00000493553 EDC3Q96F86 508 aaKnown RBP11.83□□□□□ -0.52
PRPF3-206ENST00000493553 CCDC85AQ96PX6 553 aaPredicted RBP11.83□□□□□ -0.52
PRPF3-206ENST00000493553 MYH3P11055 1940 aa11.83□□□□□ -0.52
PRPF3-206ENST00000493553 MAST3O60307 1309 aa11.83□□□□□ -0.52
PRPF3-206ENST00000493553 ZMYM6O95789 1325 aa11.83□□□□□ -0.52
PRPF3-206ENST00000493553 CARMIL3Q8ND23 1372 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 NHSQ6T4R5 1651 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 DHX16O60231 1041 aaKnown RBP11.82□□□□□ -0.52
PRPF3-206ENST00000493553 VSIG8P0DPA2 414 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 HSPA1LP34931 641 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 RFC4P35249 363 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 ADD2P35612 726 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 ZAP70P43403 619 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 SCTRP47872 440 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 TRDNQ13061 729 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 ALX1Q15699 326 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 CAVIN4Q5BKX8 364 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 SYNE4Q8N205 404 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 SPATA5Q8NB90 893 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 RGS22Q8NE09 1264 aa11.82□□□□□ -0.52
PRPF3-206ENST00000493553 DDX49Q9Y6V7 483 aaKnown RBP11.82□□□□□ -0.52
PRPF3-206ENST00000493553 PDS5AQ29RF7 1337 aaKnown RBP11.82□□□□□ -0.52
PRPF3-206ENST00000493553 COL5A3P25940 1745 aaPredicted RBP11.81□□□□□ -0.52
PRPF3-206ENST00000493553 GOLGA6L3A6NEY3 463 aa11.81□□□□□ -0.52
PRPF3-206ENST00000493553 STX6O43752 255 aa11.81□□□□□ -0.52
PRPF3-206ENST00000493553 PPFIA3O75145 1194 aa11.81□□□□□ -0.52
PRPF3-206ENST00000493553 CYP21A2P08686 494 aa11.81□□□□□ -0.52
PRPF3-206ENST00000493553 ZSCAN22P10073 491 aaPredicted RBP11.81□□□□□ -0.52
PRPF3-206ENST00000493553 NT5C2P49902 561 aa11.81□□□□□ -0.52
PRPF3-206ENST00000493553 HMGN5P82970 282 aaKnown RBP11.81□□□□□ -0.52
PRPF3-206ENST00000493553 PTSQ03393 145 aa11.81□□□□□ -0.52
PRPF3-206ENST00000493553 ADCK5Q3MIX3 580 aa11.81□□□□□ -0.52
PRPF3-206ENST00000493553 SLC9C2Q5TAH2 1124 aa11.81□□□□□ -0.52
PRPF3-206ENST00000493553 FOXD4L5Q5VV16 416 aaPredicted RBP11.81□□□□□ -0.52
PRPF3-206ENST00000493553 CYP2U1Q7Z449 544 aa11.81□□□□□ -0.52
PRPF3-206ENST00000493553 PHTF2Q8N3S3 785 aa11.81□□□□□ -0.52
PRPF3-206ENST00000493553 NACAP1Q9BZK3 213 aa11.81□□□□□ -0.52
PRPF3-206ENST00000493553 SOX11P35716 441 aa11.8□□□□□ -0.52
PRPF3-206ENST00000493553 MCAMP43121 646 aa11.8□□□□□ -0.52
PRPF3-206ENST00000493553 MCTP1Q6DN14 999 aa11.8□□□□□ -0.52
PRPF3-206ENST00000493553 NOL8Q76FK4 1167 aaKnown RBP11.8□□□□□ -0.52
PRPF3-206ENST00000493553 RALYLQ86SE5 291 aaKnown RBP11.8□□□□□ -0.52
PRPF3-206ENST00000493553 OSBP2Q969R2 916 aa11.8□□□□□ -0.52
PRPF3-206ENST00000493553 ZNF274Q96GC6 653 aaPredicted RBP11.8□□□□□ -0.52
PRPF3-206ENST00000493553 QTRT2Q9H974 415 aaKnown RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms