RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 IGF2BP3O00425 579 aaKnown RBP eCLIP19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 CXCL11O14625 94 aa19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 ALDH1A1P00352 501 aa19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 ASNSP08243 561 aa19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 SHMT1P34896 483 aa19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 TDO2P48775 406 aa19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 MCMDC2Q4G0Z9 681 aa19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 SBK1Q52WX2 424 aa19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 ERICH6BQ5W0A0 696 aa19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 OTUD7BQ6GQQ9 843 aa19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 CCDC84Q86UT8 332 aaPredicted RBP19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 TBC1D2Q9BYX2 928 aa19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 SWAP70Q9UH65 585 aa19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 AFG3L2Q9Y4W6 797 aa19.49■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 USP17L5A8MUK1 530 aa19.48■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 HIP1O00291 1037 aa19.48■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 LBX1P52954 281 aa19.48■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 CERKLQ49MI3 558 aaPredicted RBP19.48■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 IFNL3Q8IZI9 196 aa19.48■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 PTPN18Q99952 460 aa19.48■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 NACAP1Q9BZK3 213 aa19.48■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 DIAPH3Q9NSV4 1193 aa19.48■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 ZBTB21Q9ULJ3 1066 aa19.48■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 PCNTO95613 3336 aa19.48■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 JAG1P78504 1218 aa19.47■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 SHROOM1Q2M3G4 852 aaPredicted RBP19.47■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 SLC44A5Q8NCS7 719 aa19.47■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 DYNLL2Q96FJ2 89 aa19.47■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 AS3MTQ9HBK9 375 aa19.47■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 TRIM75PA6NK02 468 aa19.46■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 GH2P01242 217 aa19.46■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 ABCB5Q2M3G0 1257 aa19.46■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 C16orf86Q6ZW13 317 aa19.46■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 ZNF280CQ8ND82 737 aa19.46■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 NAPBQ9H115 298 aa19.46■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 CCDC171Q6TFL3 1326 aa19.46■□□□□ 0.71
MSH5-SAPCD1-206ENST00000491552 ROBO3Q96MS0 1386 aa19.45■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 A0A0G2JLL6 359 aaPredicted RBP19.45■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 MINDY4BA8MYZ0 360 aa19.45■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 BTBD19C9JJ37 291 aa19.45■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 SMIM22K7EJ46 135 aa19.45■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 TBC1D8O95759 1140 aa19.45■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 CDK8P49336 464 aa19.45■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 MFAP1P55081 439 aaKnown RBP19.45■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 PRRT2Q7Z6L0 340 aaPredicted RBP19.45■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 ZNF589Q86UQ0 364 aaPredicted RBP19.45■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 CFHR5Q9BXR6 569 aa19.45■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 CABP5Q9NP86 173 aa19.45■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 PRDM10Q9NQV6 1147 aa19.45■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 FOXP2O15409 715 aa19.44■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 SPP2Q13103 211 aa19.44■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 VPS53Q5VIR6 699 aa19.44■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 CWC27Q6UX04 472 aaKnown RBP19.44■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 FAM43AQ8N2R8 423 aa19.44■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 WDR18Q9BV38 432 aa19.44■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 ZCCHC17Q9NP64 241 aaKnown RBP19.44■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 PPP4R2Q9NY27 417 aa19.44■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 PTPRFP10586 1907 aa19.44■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 MYH8P13535 1937 aa19.44■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 MOGSQ13724 837 aa19.43■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 FASTKD5Q7L8L6 764 aaKnown RBP19.43■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 ANKRD23Q86SG2 305 aa19.43■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 SKAP1Q86WV1 359 aa19.43■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 MPHOSPH10O00566 681 aaKnown RBP19.42■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 RAB3GAP1Q15042 981 aa19.42■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 TAF1CQ15572 869 aaPredicted RBP19.42■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 GADL1Q6ZQY3 521 aa19.42■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 CCDC17Q96LX7 622 aa19.42■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 LOC285556D6RIA3 1793 aa19.42■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 HSPD1P10809 573 aaKnown RBP19.41■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 CRHR2Q13324 411 aa19.41■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 ALX1Q15699 326 aa19.41■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 TMEM179Q6ZVK1 233 aa19.41■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 STK11IPQ8N1F8 1099 aa19.41■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 USP17L10C9JJH3 530 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 PDHXO00330 501 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 AKR1B1P15121 316 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 GUCY1A2P33402 732 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 HMGCS2P54868 508 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 BACE1P56817 501 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 PPARAQ07869 468 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 MTMR2Q13614 643 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 SEPT2Q15019 361 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 NOM1Q5C9Z4 860 aaKnown RBP19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 SH3D19Q5HYK7 790 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 GPAT2Q6NUI2 795 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 PROCA1Q8NCQ7 364 aaPredicted RBP19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 R3HDMLQ9H3Y0 253 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 MKNK2Q9HBH9 465 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 ZNF287Q9HBT7 754 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 ZFYVE28Q9HCC9 887 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 ZMYM6O95789 1325 aa19.4■□□□□ 0.7
MSH5-SAPCD1-206ENST00000491552 C19orf81C9J6K1 198 aa19.39■□□□□ 0.69
MSH5-SAPCD1-206ENST00000491552 GPR25O00155 361 aa19.39■□□□□ 0.69
MSH5-SAPCD1-206ENST00000491552 SLC3A2P08195 630 aaKnown RBP19.39■□□□□ 0.69
MSH5-SAPCD1-206ENST00000491552 CHMLP26374 656 aa19.39■□□□□ 0.69
MSH5-SAPCD1-206ENST00000491552 RUFY2Q8WXA3 655 aa19.39■□□□□ 0.69
MSH5-SAPCD1-206ENST00000491552 AGTPBP1Q9UPW5 1226 aa19.39■□□□□ 0.69
MSH5-SAPCD1-206ENST00000491552 RAD50Q92878 1312 aa19.39■□□□□ 0.69
MSH5-SAPCD1-206ENST00000491552 FGAP02671 866 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms