RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 ELNP15502 786 aa16.61■□□□□ 0.25
COL6A3-211ENST00000491233 USP5P45974 858 aa16.61■□□□□ 0.25
COL6A3-211ENST00000491233 GCLCP48506 637 aaPredicted RBP16.61■□□□□ 0.25
COL6A3-211ENST00000491233 CERS3Q8IU89 383 aa16.61■□□□□ 0.25
COL6A3-211ENST00000491233 GCC1Q96CN9 775 aa16.61■□□□□ 0.25
COL6A3-211ENST00000491233 ASCC2Q9H1I8 757 aaPredicted RBP16.61■□□□□ 0.25
COL6A3-211ENST00000491233 MKI67P46013 3256 aaKnown RBP16.61■□□□□ 0.25
COL6A3-211ENST00000491233 MYH8P13535 1937 aa16.6■□□□□ 0.25
COL6A3-211ENST00000491233 HMMRO75330 724 aa16.6■□□□□ 0.25
COL6A3-211ENST00000491233 BACE1P56817 501 aa16.6■□□□□ 0.25
COL6A3-211ENST00000491233 IRF5Q13568 498 aa16.6■□□□□ 0.25
COL6A3-211ENST00000491233 RPAP2Q8IXW5 612 aaPredicted RBP16.6■□□□□ 0.25
COL6A3-211ENST00000491233 CLASRPQ8N2M8 674 aaKnown RBP16.6■□□□□ 0.25
COL6A3-211ENST00000491233 NKX2-3Q8TAU0 364 aa16.6■□□□□ 0.25
COL6A3-211ENST00000491233 COA7Q96BR5 231 aa16.6■□□□□ 0.25
COL6A3-211ENST00000491233 KIF1BPQ96EK5 621 aa16.6■□□□□ 0.25
COL6A3-211ENST00000491233 RNF208Q9H0X6 261 aa16.6■□□□□ 0.25
COL6A3-211ENST00000491233 GINM1Q9NU53 330 aa16.6■□□□□ 0.25
COL6A3-211ENST00000491233 ZBTB40Q9NUA8 1239 aa16.6■□□□□ 0.25
COL6A3-211ENST00000491233 TMOD4Q9NZQ9 345 aa16.6■□□□□ 0.25
COL6A3-211ENST00000491233 TAOK2Q9UL54 1235 aa16.6■□□□□ 0.25
COL6A3-211ENST00000491233 INHAP05111 366 aa16.59■□□□□ 0.25
COL6A3-211ENST00000491233 GJB1P08034 283 aa16.59■□□□□ 0.25
COL6A3-211ENST00000491233 GJA8P48165 433 aa16.59■□□□□ 0.25
COL6A3-211ENST00000491233 IRX3P78415 501 aaPredicted RBP16.59■□□□□ 0.25
COL6A3-211ENST00000491233 SIRT2Q8IXJ6 389 aa16.59■□□□□ 0.25
COL6A3-211ENST00000491233 UNC93B1Q9H1C4 597 aa16.59■□□□□ 0.25
COL6A3-211ENST00000491233 RCAN3Q9UKA8 241 aa16.59■□□□□ 0.25
COL6A3-211ENST00000491233 TTF1Q15361 905 aaPredicted RBP16.58■□□□□ 0.24
COL6A3-211ENST00000491233 TMED8Q6PL24 325 aaPredicted RBP16.58■□□□□ 0.24
COL6A3-211ENST00000491233 PXYLP1Q8TE99 480 aa16.58■□□□□ 0.24
COL6A3-211ENST00000491233 DNAJC2Q99543 621 aaKnown RBP16.58■□□□□ 0.24
COL6A3-211ENST00000491233 RIOK1Q9BRS2 568 aaKnown RBP16.58■□□□□ 0.24
COL6A3-211ENST00000491233 BCL11AQ9H165 835 aa16.58■□□□□ 0.24
COL6A3-211ENST00000491233 EHD4Q9H223 541 aa16.58■□□□□ 0.24
COL6A3-211ENST00000491233 C19orf81C9J6K1 198 aa16.57■□□□□ 0.24
COL6A3-211ENST00000491233 USP17L10C9JJH3 530 aa16.57■□□□□ 0.24
COL6A3-211ENST00000491233 GH2P01242 217 aa16.57■□□□□ 0.24
COL6A3-211ENST00000491233 IFIT2P09913 472 aaKnown RBP16.57■□□□□ 0.24
COL6A3-211ENST00000491233 PDE6AP16499 860 aa16.57■□□□□ 0.24
COL6A3-211ENST00000491233 U2AF1L4Q8WU68 220 aaKnown RBP16.57■□□□□ 0.24
COL6A3-211ENST00000491233 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.57■□□□□ 0.24
COL6A3-211ENST00000491233 MORF4L1Q9UBU8 362 aa16.57■□□□□ 0.24
COL6A3-211ENST00000491233 SERPINB13Q9UIV8 391 aa16.57■□□□□ 0.24
COL6A3-211ENST00000491233 MAGEB6P1A0A0J9YX57 407 aa16.56■□□□□ 0.24
COL6A3-211ENST00000491233 GOLIM4O00461 696 aa16.56■□□□□ 0.24
COL6A3-211ENST00000491233 HOXA7P31268 230 aaPredicted RBP16.56■□□□□ 0.24
COL6A3-211ENST00000491233 TATDN1Q6P1N9 297 aa16.56■□□□□ 0.24
COL6A3-211ENST00000491233 TTC6Q86TZ1 520 aa16.56■□□□□ 0.24
COL6A3-211ENST00000491233 BAZ2AQ9UIF9 1905 aaKnown RBP16.56■□□□□ 0.24
COL6A3-211ENST00000491233 ZNF532Q9HCE3 1301 aa16.55■□□□□ 0.24
COL6A3-211ENST00000491233 PEX10O60683 326 aa16.55■□□□□ 0.24
COL6A3-211ENST00000491233 RAB11FIP3O75154 756 aa16.55■□□□□ 0.24
COL6A3-211ENST00000491233 HERVK_113P62684 666 aa16.55■□□□□ 0.24
COL6A3-211ENST00000491233 HABP4Q5JVS0 413 aaKnown RBP16.55■□□□□ 0.24
COL6A3-211ENST00000491233 SLC9C2Q5TAH2 1124 aa16.55■□□□□ 0.24
COL6A3-211ENST00000491233 EDC3Q96F86 508 aaKnown RBP16.55■□□□□ 0.24
COL6A3-211ENST00000491233 P2RX7Q99572 595 aaKnown RBP16.55■□□□□ 0.24
COL6A3-211ENST00000491233 FEZ1Q99689 392 aa16.55■□□□□ 0.24
COL6A3-211ENST00000491233 CHMP4BQ9H444 224 aaKnown RBP16.55■□□□□ 0.24
COL6A3-211ENST00000491233 EMILIN3Q9NT22 766 aa16.55■□□□□ 0.24
COL6A3-211ENST00000491233 FARP2O94887 1054 aaPredicted RBP16.54■□□□□ 0.24
COL6A3-211ENST00000491233 ZYXQ15942 572 aaKnown RBP16.54■□□□□ 0.24
COL6A3-211ENST00000491233 USP17L2Q6R6M4 530 aa16.54■□□□□ 0.24
COL6A3-211ENST00000491233 UBE2Q1Q7Z7E8 422 aa16.54■□□□□ 0.24
COL6A3-211ENST00000491233 CRNKL1Q9BZJ0 848 aaKnown RBP16.54■□□□□ 0.24
COL6A3-211ENST00000491233 TXNRD2Q9NNW7 524 aa16.54■□□□□ 0.24
COL6A3-211ENST00000491233 ALPK3Q96L96 1907 aa16.53■□□□□ 0.24
COL6A3-211ENST00000491233 TCRBV5S4A2TA0A5A2 114 aa16.53■□□□□ 0.24
COL6A3-211ENST00000491233 H0YGN5 161 aa16.53■□□□□ 0.24
COL6A3-211ENST00000491233 SGPL1O95470 568 aa16.53■□□□□ 0.24
COL6A3-211ENST00000491233 POLR3DP05423 398 aaPredicted RBP16.53■□□□□ 0.24
COL6A3-211ENST00000491233 SHMT1P34896 483 aa16.53■□□□□ 0.24
COL6A3-211ENST00000491233 PLCD1P51178 756 aa16.53■□□□□ 0.24
COL6A3-211ENST00000491233 RAB3GAP1Q15042 981 aa16.53■□□□□ 0.24
COL6A3-211ENST00000491233 ABCB5Q2M3G0 1257 aa16.53■□□□□ 0.24
COL6A3-211ENST00000491233 CERKLQ49MI3 558 aaPredicted RBP16.53■□□□□ 0.24
COL6A3-211ENST00000491233 C20orf194Q5TEA3 1177 aa16.53■□□□□ 0.24
COL6A3-211ENST00000491233 LCORLQ8N3X6 602 aa16.53■□□□□ 0.24
COL6A3-211ENST00000491233 C12orf42Q96LP6 360 aa16.53■□□□□ 0.24
COL6A3-211ENST00000491233 DEFB118Q96PH6 123 aa16.53■□□□□ 0.24
COL6A3-211ENST00000491233 PAK6Q9NQU5 681 aaPredicted RBP16.53■□□□□ 0.24
COL6A3-211ENST00000491233 GJD2Q9UKL4 321 aa16.53■□□□□ 0.24
COL6A3-211ENST00000491233 HMGCRP04035 888 aa16.52■□□□□ 0.24
COL6A3-211ENST00000491233 EVX2Q03828 476 aa16.52■□□□□ 0.24
COL6A3-211ENST00000491233 GPRC5AQ8NFJ5 357 aa16.52■□□□□ 0.24
COL6A3-211ENST00000491233 GTF3C2Q8WUA4 911 aaPredicted RBP16.52■□□□□ 0.24
COL6A3-211ENST00000491233 SDR42E1Q8WUS8 393 aa16.52■□□□□ 0.24
COL6A3-211ENST00000491233 DPF3Q92784 378 aa16.52■□□□□ 0.24
COL6A3-211ENST00000491233 PAGR1Q9BTK6 254 aa16.52■□□□□ 0.24
COL6A3-211ENST00000491233 HTATIP2Q9BUP3 242 aa16.52■□□□□ 0.24
COL6A3-211ENST00000491233 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.52■□□□□ 0.24
COL6A3-211ENST00000491233 BOLA2Q9H3K6 86 aa16.52■□□□□ 0.24
COL6A3-211ENST00000491233 PAG1Q9NWQ8 432 aa16.52■□□□□ 0.24
COL6A3-211ENST00000491233 MCM9Q9NXL9 1143 aa16.52■□□□□ 0.24
COL6A3-211ENST00000491233 ERVK-9P63128 1117 aa16.51■□□□□ 0.23
COL6A3-211ENST00000491233 ERVK-24P63145 666 aa16.51■□□□□ 0.23
COL6A3-211ENST00000491233 GABPAQ06546 454 aa16.51■□□□□ 0.23
COL6A3-211ENST00000491233 ACER1Q8TDN7 264 aa16.51■□□□□ 0.23
COL6A3-211ENST00000491233 CABP5Q9NP86 173 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms