RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 ZNF444Q8N0Y2 327 aaPredicted RBP16.28■□□□□ 0.2
SMPD4-219ENST00000491128 ZDHHC15Q96MV8 337 aa16.28■□□□□ 0.2
SMPD4-219ENST00000491128 TFIP11Q9UBB9 837 aaKnown RBP16.28■□□□□ 0.2
SMPD4-219ENST00000491128 STX8Q9UNK0 236 aa16.28■□□□□ 0.2
SMPD4-219ENST00000491128 TIAM2Q8IVF5 1701 aa16.27■□□□□ 0.2
SMPD4-219ENST00000491128 ORC4O43929 436 aa16.27■□□□□ 0.2
SMPD4-219ENST00000491128 RASA1P20936 1047 aa16.27■□□□□ 0.2
SMPD4-219ENST00000491128 RSBN1LQ6PCB5 846 aaPredicted RBP16.27■□□□□ 0.2
SMPD4-219ENST00000491128 LLPHQ9BRT6 129 aaKnown RBP16.27■□□□□ 0.2
SMPD4-219ENST00000491128 ZNRF3Q9ULT6 936 aa16.27■□□□□ 0.2
SMPD4-219ENST00000491128 CD2APQ9Y5K6 639 aa16.27■□□□□ 0.2
SMPD4-219ENST00000491128 DDTLA6NHG4 134 aaPredicted RBP16.27■□□□□ 0.19
SMPD4-219ENST00000491128 TMED8Q6PL24 325 aaPredicted RBP16.27■□□□□ 0.19
SMPD4-219ENST00000491128 SLC26A6Q9BXS9 759 aa16.27■□□□□ 0.19
SMPD4-219ENST00000491128 LMBRD1Q9NUN5 540 aa16.27■□□□□ 0.19
SMPD4-219ENST00000491128 DDX11L8A8MPP1 907 aa16.26■□□□□ 0.19
SMPD4-219ENST00000491128 GADD45BO75293 160 aaPredicted RBP16.26■□□□□ 0.19
SMPD4-219ENST00000491128 CEBPZQ03701 1054 aaKnown RBP16.26■□□□□ 0.19
SMPD4-219ENST00000491128 NTRK3Q16288 839 aa16.26■□□□□ 0.19
SMPD4-219ENST00000491128 RBM26Q5T8P6 1007 aaKnown RBP16.26■□□□□ 0.19
SMPD4-219ENST00000491128 RCSD1Q6JBY9 416 aa16.26■□□□□ 0.19
SMPD4-219ENST00000491128 FHDC1Q9C0D6 1143 aaPredicted RBP16.26■□□□□ 0.19
SMPD4-219ENST00000491128 FAM198AQ9UFP1 575 aa16.26■□□□□ 0.19
SMPD4-219ENST00000491128 TCP10L2B9ZVM9 353 aa16.26■□□□□ 0.19
SMPD4-219ENST00000491128 PLEKHA8P1O95397 391 aa16.26■□□□□ 0.19
SMPD4-219ENST00000491128 CLEC17AQ6ZS10 378 aa16.26■□□□□ 0.19
SMPD4-219ENST00000491128 FANCBQ8NB91 859 aa16.26■□□□□ 0.19
SMPD4-219ENST00000491128 FTOQ9C0B1 505 aaKnown RBP eCLIP16.26■□□□□ 0.19
SMPD4-219ENST00000491128 OSBPL5Q9H0X9 879 aaPredicted RBP16.26■□□□□ 0.19
SMPD4-219ENST00000491128 EGFRP00533 1210 aa16.25■□□□□ 0.19
SMPD4-219ENST00000491128 PDCP20941 246 aa16.25■□□□□ 0.19
SMPD4-219ENST00000491128 RTN1Q16799 776 aa16.25■□□□□ 0.19
SMPD4-219ENST00000491128 JDP2Q8WYK2 163 aa16.25■□□□□ 0.19
SMPD4-219ENST00000491128 GOLGA6L22H0YM25 854 aa16.25■□□□□ 0.19
SMPD4-219ENST00000491128 DHX16O60231 1041 aaKnown RBP16.25■□□□□ 0.19
SMPD4-219ENST00000491128 VIL1P09327 827 aaKnown RBP16.25■□□□□ 0.19
SMPD4-219ENST00000491128 C16orf86Q6ZW13 317 aa16.25■□□□□ 0.19
SMPD4-219ENST00000491128 SH3BP5LQ7L8J4 393 aa16.25■□□□□ 0.19
SMPD4-219ENST00000491128 USP48Q86UV5 1035 aa16.25■□□□□ 0.19
SMPD4-219ENST00000491128 SPON1Q9HCB6 807 aa16.25■□□□□ 0.19
SMPD4-219ENST00000491128 KIAA1551Q9HCM1 1747 aa16.24■□□□□ 0.19
SMPD4-219ENST00000491128 HMGN5P82970 282 aaKnown RBP16.24■□□□□ 0.19
SMPD4-219ENST00000491128 CDAN1Q8IWY9 1227 aa16.24■□□□□ 0.19
SMPD4-219ENST00000491128 SERPINA10Q9UK55 444 aa16.24■□□□□ 0.19
SMPD4-219ENST00000491128 DDX49Q9Y6V7 483 aaKnown RBP16.24■□□□□ 0.19
SMPD4-219ENST00000491128 TROAPQ12815 778 aa16.24■□□□□ 0.19
SMPD4-219ENST00000491128 CATIPQ7Z7H3 387 aa16.24■□□□□ 0.19
SMPD4-219ENST00000491128 GJA3Q9Y6H8 435 aa16.24■□□□□ 0.19
SMPD4-219ENST00000491128 AKR1B1P15121 316 aa16.23■□□□□ 0.19
SMPD4-219ENST00000491128 SOGA3Q5TF21 947 aa16.23■□□□□ 0.19
SMPD4-219ENST00000491128 C8orf76Q96K31 380 aa16.23■□□□□ 0.19
SMPD4-219ENST00000491128 CPVLQ9H3G5 476 aa16.23■□□□□ 0.19
SMPD4-219ENST00000491128 VEZTQ9HBM0 779 aa16.23■□□□□ 0.19
SMPD4-219ENST00000491128 DLEC1Q9Y238 1755 aa16.23■□□□□ 0.19
SMPD4-219ENST00000491128 CERS3Q8IU89 383 aa16.23■□□□□ 0.19
SMPD4-219ENST00000491128 OGFOD1Q8N543 542 aa16.23■□□□□ 0.19
SMPD4-219ENST00000491128 GPT2Q8TD30 523 aa16.23■□□□□ 0.19
SMPD4-219ENST00000491128 GMLQ99445 158 aa16.23■□□□□ 0.19
SMPD4-219ENST00000491128 ALG1Q9BT22 464 aa16.23■□□□□ 0.19
SMPD4-219ENST00000491128 RBM27Q9P2N5 1060 aaKnown RBP16.23■□□□□ 0.19
SMPD4-219ENST00000491128 MPHOSPH10O00566 681 aaKnown RBP16.22■□□□□ 0.19
SMPD4-219ENST00000491128 IGSF3O75054 1194 aa16.22■□□□□ 0.19
SMPD4-219ENST00000491128 GOLGA8HP0CJ92 632 aa16.22■□□□□ 0.19
SMPD4-219ENST00000491128 NBPF9Q3BBW0 867 aa16.22■□□□□ 0.19
SMPD4-219ENST00000491128 ARHGAP27Q6ZUM4 889 aa16.22■□□□□ 0.19
SMPD4-219ENST00000491128 NBPF11Q86T75 865 aa16.22■□□□□ 0.19
SMPD4-219ENST00000491128 TMTC2Q8N394 836 aa16.22■□□□□ 0.19
SMPD4-219ENST00000491128 CEP95Q96GE4 821 aa16.22■□□□□ 0.19
SMPD4-219ENST00000491128 DNAJC18Q9H819 358 aa16.22■□□□□ 0.19
SMPD4-219ENST00000491128 SERPINB13Q9UIV8 391 aa16.22■□□□□ 0.19
SMPD4-219ENST00000491128 PCP11498 1178 aaKnown RBP16.22■□□□□ 0.19
SMPD4-219ENST00000491128 VEGFAP15692 232 aaPredicted RBP16.22■□□□□ 0.19
SMPD4-219ENST00000491128 FKBP1AP62942 108 aaKnown RBP16.22■□□□□ 0.19
SMPD4-219ENST00000491128 GRIPAP1Q4V328 841 aa16.22■□□□□ 0.19
SMPD4-219ENST00000491128 TTC6Q86TZ1 520 aa16.22■□□□□ 0.19
SMPD4-219ENST00000491128 STAG2Q8N3U4 1231 aa16.22■□□□□ 0.19
SMPD4-219ENST00000491128 KIF13BQ9NQT8 1826 aa16.21■□□□□ 0.19
SMPD4-219ENST00000491128 ROBO3Q96MS0 1386 aa16.21■□□□□ 0.19
SMPD4-219ENST00000491128 SPDYE2BA6NHP3 402 aa16.21■□□□□ 0.19
SMPD4-219ENST00000491128 SPDYE6P0CI01 402 aa16.21■□□□□ 0.19
SMPD4-219ENST00000491128 ATP2B2Q01814 1243 aa16.21■□□□□ 0.19
SMPD4-219ENST00000491128 RESTQ13127 1097 aa16.21■□□□□ 0.19
SMPD4-219ENST00000491128 DLGAP5Q15398 846 aa16.21■□□□□ 0.19
SMPD4-219ENST00000491128 CIAPIN1Q6FI81 312 aa16.21■□□□□ 0.19
SMPD4-219ENST00000491128 PNMA1Q8ND90 353 aa16.21■□□□□ 0.19
SMPD4-219ENST00000491128 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.21■□□□□ 0.19
SMPD4-219ENST00000491128 KAT14Q9H8E8 782 aa16.21■□□□□ 0.19
SMPD4-219ENST00000491128 KCNJ14Q9UNX9 436 aa16.21■□□□□ 0.19
SMPD4-219ENST00000491128 GABPAQ06546 454 aa16.21■□□□□ 0.18
SMPD4-219ENST00000491128 SSRP1Q08945 709 aaKnown RBP16.21■□□□□ 0.18
SMPD4-219ENST00000491128 CRACR2BQ8N4Y2 399 aaPredicted RBP16.21■□□□□ 0.18
SMPD4-219ENST00000491128 TMEM47Q9BQJ4 181 aa16.21■□□□□ 0.18
SMPD4-219ENST00000491128 KIF28PB7ZC32 967 aa16.2■□□□□ 0.18
SMPD4-219ENST00000491128 SHMT1P34896 483 aa16.2■□□□□ 0.18
SMPD4-219ENST00000491128 CPLX2Q6PUV4 134 aaKnown RBP16.2■□□□□ 0.18
SMPD4-219ENST00000491128 V9GY48 417 aaPredicted RBP16.2■□□□□ 0.18
SMPD4-219ENST00000491128 BAZ2BQ9UIF8 2168 aaKnown RBP16.2■□□□□ 0.18
SMPD4-219ENST00000491128 NAV1Q8NEY1 1877 aa16.2■□□□□ 0.18
SMPD4-219ENST00000491128 SAMD7Q7Z3H4 446 aa16.2■□□□□ 0.18
SMPD4-219ENST00000491128 LRRC47Q8N1G4 583 aaKnown RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms