RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 TGFBRAP1Q8WUH2 860 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 TTC12Q9H892 705 aaPredicted RBP8.35□□□□□ -1.07
NPHP3-208ENST00000490993 MCM7P33993 719 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 SAP30BPQ9UHR5 308 aaKnown RBP8.35□□□□□ -1.07
NPHP3-208ENST00000490993 KCNJ14Q9UNX9 436 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 MRVI1Q9Y6F6 885 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 F8W031 263 aaPredicted RBP8.35□□□□□ -1.07
NPHP3-208ENST00000490993 PRKAB2O43741 272 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 RRP9O43818 475 aaKnown RBP8.35□□□□□ -1.07
NPHP3-208ENST00000490993 MFSD14BQ5SR56 506 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 SEPT12Q8IYM1 358 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 PDCL2Q8N4E4 241 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 CCDC24Q8N4L8 307 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 TDRD7Q8NHU6 1098 aaKnown RBP8.35□□□□□ -1.07
NPHP3-208ENST00000490993 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.35□□□□□ -1.07
NPHP3-208ENST00000490993 EXOC1Q9NV70 894 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 SRP68Q9UHB9 627 aaKnown RBP8.35□□□□□ -1.07
NPHP3-208ENST00000490993 CLIC4Q9Y696 253 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 PRPF3O43395 683 aaKnown RBP8.35□□□□□ -1.07
NPHP3-208ENST00000490993 DTNBO60941 627 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 PTGS1P23219 599 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 TRAPPC10P48553 1259 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 TNIP1Q15025 636 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 ZNF174Q15697 407 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 TRIML1Q8N9V2 468 aa8.35□□□□□ -1.07
NPHP3-208ENST00000490993 ZNF830Q96NB3 372 aaPredicted RBP8.35□□□□□ -1.07
NPHP3-208ENST00000490993 H0YIN7 160 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 MMP1P03956 469 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 CDC25BP30305 580 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 MECOMQ03112 1051 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 ITPK1Q13572 414 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 SLFNL1Q499Z3 407 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 SAMD1Q6SPF0 538 aaPredicted RBP8.34□□□□□ -1.07
NPHP3-208ENST00000490993 LRP10Q7Z4F1 713 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 KDM3BQ7LBC6 1761 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 KCNQ2O43526 872 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 SSBP05455 408 aaKnown RBP eCLIP8.34□□□□□ -1.07
NPHP3-208ENST00000490993 SCG2P13521 617 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 POSTNQ15063 836 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 PIK3AP1Q6ZUJ8 805 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 KRT27Q7Z3Y8 459 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 MAPKAPK5Q8IW41 473 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 ERMNQ8TAM6 284 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 PSMA7O14818 248 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 SNW1Q13573 536 aaKnown RBP8.34□□□□□ -1.07
NPHP3-208ENST00000490993 FAM47AQ5JRC9 791 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 GJD4Q96KN9 370 aaPredicted RBP8.34□□□□□ -1.07
NPHP3-208ENST00000490993 ACBD3Q9H3P7 528 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 STK32BQ9NY57 414 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 IFNKQ9P0W0 207 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.34□□□□□ -1.07
NPHP3-208ENST00000490993 VWA3AA6NCI4 1184 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 GSG1L2A8MUP6 293 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 LMOD1P29536 600 aaPredicted RBP8.34□□□□□ -1.07
NPHP3-208ENST00000490993 BTDP43251 543 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 DYNLL1P63167 89 aaKnown RBP8.34□□□□□ -1.07
NPHP3-208ENST00000490993 CEP135Q66GS9 1140 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 FBXL16Q8N461 479 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 MRFAP1L1Q96HT8 127 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 VPS54Q9P1Q0 977 aa8.34□□□□□ -1.07
NPHP3-208ENST00000490993 NEDD4P46934 1319 aa8.34□□□□□ -1.08
NPHP3-208ENST00000490993 UBN2Q6ZU65 1347 aa8.34□□□□□ -1.08
NPHP3-208ENST00000490993 BICDL2A1A5D9 508 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 POLR2DO15514 142 aaKnown RBP8.33□□□□□ -1.08
NPHP3-208ENST00000490993 ARHGAP29Q52LW3 1261 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 CYB5R4Q7L1T6 521 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 OGFOD1Q8N543 542 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 ARHGEF1Q92888 912 aaKnown RBP8.33□□□□□ -1.08
NPHP3-208ENST00000490993 C16orf45Q96MC5 204 aaPredicted RBP8.33□□□□□ -1.08
NPHP3-208ENST00000490993 TANGO6Q9C0B7 1094 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 LY9Q9HBG7 655 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 PPEF1O14829 653 aaPredicted RBP8.33□□□□□ -1.08
NPHP3-208ENST00000490993 NDUFA8P51970 172 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 MRPL12P52815 198 aaKnown RBP8.33□□□□□ -1.08
NPHP3-208ENST00000490993 ZNF772Q68DY9 489 aaPredicted RBP8.33□□□□□ -1.08
NPHP3-208ENST00000490993 WWC2Q6AWC2 1192 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 LINC00116Q8NCU8 138 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 PNMA1Q8ND90 353 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 BTBD18B2RXH4 712 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 KIF5CO60282 957 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 NONOQ15233 471 aaKnown RBP eCLIP8.33□□□□□ -1.08
NPHP3-208ENST00000490993 KRBA2Q6ZNG9 492 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 ARID3AQ99856 593 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 N4BP3O15049 544 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 APBA3O96018 575 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 SLC10A5Q5PT55 438 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 BLIDQ8IZY5 108 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 CELF1Q92879 486 aaKnown RBP8.33□□□□□ -1.08
NPHP3-208ENST00000490993 ERCC4Q92889 916 aaPredicted RBP8.33□□□□□ -1.08
NPHP3-208ENST00000490993 TEKT1Q969V4 418 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 NUP88Q99567 741 aaPredicted RBP8.33□□□□□ -1.08
NPHP3-208ENST00000490993 ZHX3Q9H4I2 956 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 ZNF219Q9P2Y4 722 aaPredicted RBP8.33□□□□□ -1.08
NPHP3-208ENST00000490993 PHRF1Q9P1Y6 1649 aaKnown RBP8.33□□□□□ -1.08
NPHP3-208ENST00000490993 FGFR2P21802 821 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 CASQ1P31415 396 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 KRT79Q5XKE5 535 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 FAM84BQ96KN1 310 aaPredicted RBP8.33□□□□□ -1.08
NPHP3-208ENST00000490993 DEF6Q9H4E7 631 aa8.33□□□□□ -1.08
NPHP3-208ENST00000490993 SWAP70Q9UH65 585 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms