RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 ZSWIM5Q9P217 1185 aa13.67□□□□□ -0.22
TRIM40-208ENST00000489892 PI4KBQ9UBF8 816 aa13.67□□□□□ -0.22
TRIM40-208ENST00000489892 SAP30BPQ9UHR5 308 aaKnown RBP13.67□□□□□ -0.22
TRIM40-208ENST00000489892 ATRNL1Q5VV63 1379 aa13.67□□□□□ -0.22
TRIM40-208ENST00000489892 CCDC196A0A1B0GTZ2 297 aa13.66□□□□□ -0.22
TRIM40-208ENST00000489892 TSPY2A6NKD2 308 aa13.66□□□□□ -0.22
TRIM40-208ENST00000489892 CDKL5O76039 1030 aa13.66□□□□□ -0.22
TRIM40-208ENST00000489892 CALM1P0DP23 149 aa13.66□□□□□ -0.22
TRIM40-208ENST00000489892 CALM2P0DP24 149 aa13.66□□□□□ -0.22
TRIM40-208ENST00000489892 CALM3P0DP25 149 aa13.66□□□□□ -0.22
TRIM40-208ENST00000489892 LMOD1P29536 600 aaPredicted RBP13.66□□□□□ -0.22
TRIM40-208ENST00000489892 GMPSP49915 693 aaPredicted RBP13.66□□□□□ -0.22
TRIM40-208ENST00000489892 WTAPQ15007 396 aa13.66□□□□□ -0.22
TRIM40-208ENST00000489892 FAM83AQ86UY5 434 aa13.66□□□□□ -0.22
TRIM40-208ENST00000489892 ZSCAN29Q8IWY8 852 aaPredicted RBP13.66□□□□□ -0.22
TRIM40-208ENST00000489892 CCDC17Q96LX7 622 aa13.66□□□□□ -0.22
TRIM40-208ENST00000489892 TCEANC2Q96MN5 208 aa13.66□□□□□ -0.22
TRIM40-208ENST00000489892 TPCN1Q9ULQ1 816 aa13.66□□□□□ -0.22
TRIM40-208ENST00000489892 ZBTB12Q9Y330 459 aaPredicted RBP13.66□□□□□ -0.22
TRIM40-208ENST00000489892 GJA3Q9Y6H8 435 aa13.66□□□□□ -0.22
TRIM40-208ENST00000489892 CYP2D7A0A087X1C5 515 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 GOLGA6L3A6NEY3 463 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 TRAK2O60296 914 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 PFKFB2O60825 505 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 POTEIP0CG38 1075 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 POTEJP0CG39 1038 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 TSPY3P0CV98 308 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 TSPY8P0CW00 308 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 PDCP20941 246 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 CTCFP49711 727 aaPredicted RBP13.65□□□□□ -0.22
TRIM40-208ENST00000489892 ANTXR2P58335 489 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 HMGN5P82970 282 aaKnown RBP13.65□□□□□ -0.22
TRIM40-208ENST00000489892 LDHDQ86WU2 507 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 MICALL2Q8IY33 904 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 CRACR2BQ8N4Y2 399 aaPredicted RBP13.65□□□□□ -0.22
TRIM40-208ENST00000489892 GTF3C6Q969F1 213 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 HOOK2Q96ED9 719 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 PRMT6Q96LA8 375 aaPredicted RBP13.65□□□□□ -0.22
TRIM40-208ENST00000489892 ZSCAN10Q96SZ4 725 aaPredicted RBP13.65□□□□□ -0.22
TRIM40-208ENST00000489892 TDRD3Q9H7E2 651 aaKnown RBP13.65□□□□□ -0.22
TRIM40-208ENST00000489892 TCP11L1Q9NUJ3 509 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 ZNF70Q9UC06 446 aaPredicted RBP13.65□□□□□ -0.22
TRIM40-208ENST00000489892 HERC5Q9UII4 1024 aaKnown RBP13.65□□□□□ -0.22
TRIM40-208ENST00000489892 SMC3Q9UQE7 1217 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 SLC12A7Q9Y666 1083 aa13.65□□□□□ -0.22
TRIM40-208ENST00000489892 KLF18A0A0U1RQI7 1052 aa13.64□□□□□ -0.23
TRIM40-208ENST00000489892 FSD2A1L4K1 749 aa13.64□□□□□ -0.23
TRIM40-208ENST00000489892 GOLGA8BA8MQT2 603 aa13.64□□□□□ -0.23
TRIM40-208ENST00000489892 CYP2D6P10635 497 aa13.64□□□□□ -0.23
TRIM40-208ENST00000489892 CDK8P49336 464 aa13.64□□□□□ -0.23
TRIM40-208ENST00000489892 ME3Q16798 604 aa13.64□□□□□ -0.23
TRIM40-208ENST00000489892 EAPPQ56P03 285 aaPredicted RBP13.64□□□□□ -0.23
TRIM40-208ENST00000489892 IFIT1BQ5T764 474 aaKnown RBP13.64□□□□□ -0.23
TRIM40-208ENST00000489892 CYB5R4Q7L1T6 521 aa13.64□□□□□ -0.23
TRIM40-208ENST00000489892 DGKHQ86XP1 1220 aa13.64□□□□□ -0.23
TRIM40-208ENST00000489892 IGDCC4Q8TDY8 1250 aa13.64□□□□□ -0.23
TRIM40-208ENST00000489892 FAM151AQ8WW52 585 aa13.64□□□□□ -0.23
TRIM40-208ENST00000489892 ZBED3Q96IU2 234 aaPredicted RBP13.64□□□□□ -0.23
TRIM40-208ENST00000489892 L3MBTL3Q96JM7 780 aaPredicted RBP13.64□□□□□ -0.23
TRIM40-208ENST00000489892 CNOT7Q9UIV1 285 aaKnown RBP13.64□□□□□ -0.23
TRIM40-208ENST00000489892 NAP1L2Q9ULW6 460 aaPredicted RBP13.64□□□□□ -0.23
TRIM40-208ENST00000489892 TNKSO95271 1327 aa13.64□□□□□ -0.23
TRIM40-208ENST00000489892 ZNF541Q9H0D2 1346 aa13.64□□□□□ -0.23
TRIM40-208ENST00000489892 PLIN4Q96Q06 1357 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 CPLX1O14810 134 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 ZBTB43O43298 467 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 DDAH1O94760 285 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 MRE11P49959 708 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 LBX1P52954 281 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 GABPAQ06546 454 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 APOBRQ0VD83 1088 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 KIF4BQ2VIQ3 1234 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 CHST3Q7LGC8 479 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 CATIPQ7Z7H3 387 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 APOBEC3FQ8IUX4 373 aaKnown RBP13.63□□□□□ -0.23
TRIM40-208ENST00000489892 CCDC83Q8IWF9 413 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 TNPO1Q92973 898 aaKnown RBP13.63□□□□□ -0.23
TRIM40-208ENST00000489892 LRRC2Q9BYS8 371 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 TAF1DQ9H5J8 278 aaPredicted RBP13.63□□□□□ -0.23
TRIM40-208ENST00000489892 LY9Q9HBG7 655 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 DDX4Q9NQI0 724 aaKnown RBP13.63□□□□□ -0.23
TRIM40-208ENST00000489892 GPRC5DQ9NZD1 345 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 CLEC11AQ9Y240 323 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 ADAMTSL1Q8N6G6 1762 aa13.63□□□□□ -0.23
TRIM40-208ENST00000489892 NID2Q14112 1375 aa13.62□□□□□ -0.23
TRIM40-208ENST00000489892 WNT10BO00744 389 aa13.62□□□□□ -0.23
TRIM40-208ENST00000489892 PRDM1O75626 825 aa13.62□□□□□ -0.23
TRIM40-208ENST00000489892 RASA1P20936 1047 aa13.62□□□□□ -0.23
TRIM40-208ENST00000489892 PDIA3P30101 505 aaKnown RBP13.62□□□□□ -0.23
TRIM40-208ENST00000489892 METAP2P50579 478 aaKnown RBP eCLIP13.62□□□□□ -0.23
TRIM40-208ENST00000489892 PLCD1P51178 756 aa13.62□□□□□ -0.23
TRIM40-208ENST00000489892 TFAP4Q01664 338 aa13.62□□□□□ -0.23
TRIM40-208ENST00000489892 NFIAQ12857 509 aa13.62□□□□□ -0.23
TRIM40-208ENST00000489892 APOA5Q6Q788 366 aa13.62□□□□□ -0.23
TRIM40-208ENST00000489892 NEDD1Q8NHV4 660 aa13.62□□□□□ -0.23
TRIM40-208ENST00000489892 ANKS1AQ92625 1134 aa13.62□□□□□ -0.23
TRIM40-208ENST00000489892 VEZTQ9HBM0 779 aa13.62□□□□□ -0.23
TRIM40-208ENST00000489892 FAM198AQ9UFP1 575 aa13.62□□□□□ -0.23
TRIM40-208ENST00000489892 HACL1Q9UJ83 578 aa13.62□□□□□ -0.23
TRIM40-208ENST00000489892 CNTNAP1P78357 1384 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms