RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 PRRT3Q5FWE3 981 aa8.64□□□□□ -1.03
PRPF40A-210ENST00000489741 AKAP4Q5JQC9 854 aa8.64□□□□□ -1.03
PRPF40A-210ENST00000489741 C1orf141Q5JVX7 400 aa8.64□□□□□ -1.03
PRPF40A-210ENST00000489741 INTS5Q6P9B9 1019 aaKnown RBP8.64□□□□□ -1.03
PRPF40A-210ENST00000489741 C20orf204Q6ZNR8 217 aa8.64□□□□□ -1.03
PRPF40A-210ENST00000489741 LGR6Q9HBX8 967 aa8.64□□□□□ -1.03
PRPF40A-210ENST00000489741 C10orf71Q711Q0 1435 aa8.63□□□□□ -1.03
PRPF40A-210ENST00000489741 ZNF831Q5JPB2 1677 aa8.63□□□□□ -1.03
PRPF40A-210ENST00000489741 KIF7Q2M1P5 1343 aa8.63□□□□□ -1.03
PRPF40A-210ENST00000489741 RGS9O75916 674 aaPredicted RBP8.63□□□□□ -1.03
PRPF40A-210ENST00000489741 DPEP1P16444 411 aa8.63□□□□□ -1.03
PRPF40A-210ENST00000489741 TM4SF1P30408 202 aa8.63□□□□□ -1.03
PRPF40A-210ENST00000489741 GPLD1P80108 840 aa8.63□□□□□ -1.03
PRPF40A-210ENST00000489741 TRIP4Q15650 581 aaPredicted RBP8.63□□□□□ -1.03
PRPF40A-210ENST00000489741 TRPM4Q8TD43 1214 aa8.63□□□□□ -1.03
PRPF40A-210ENST00000489741 HELQQ8TDG4 1101 aa8.63□□□□□ -1.03
PRPF40A-210ENST00000489741 GPR152Q8TDT2 470 aa8.63□□□□□ -1.03
PRPF40A-210ENST00000489741 SLC52A2Q9HAB3 445 aa8.63□□□□□ -1.03
PRPF40A-210ENST00000489741 WWC3Q9ULE0 1092 aa8.63□□□□□ -1.03
PRPF40A-210ENST00000489741 USP42Q9H9J4 1324 aaKnown RBP8.62□□□□□ -1.03
PRPF40A-210ENST00000489741 MSTNO14793 375 aa8.62□□□□□ -1.03
PRPF40A-210ENST00000489741 ZBTB39O15060 712 aa8.62□□□□□ -1.03
PRPF40A-210ENST00000489741 RNMTO43148 476 aaKnown RBP8.62□□□□□ -1.03
PRPF40A-210ENST00000489741 PSAPP07602 524 aa8.62□□□□□ -1.03
PRPF40A-210ENST00000489741 SPATA31C1P0DKV0 1188 aa8.62□□□□□ -1.03
PRPF40A-210ENST00000489741 CCER1Q8TC90 406 aaPredicted RBP8.62□□□□□ -1.03
PRPF40A-210ENST00000489741 GTF3C2Q8WUA4 911 aaPredicted RBP8.62□□□□□ -1.03
PRPF40A-210ENST00000489741 CCDC87Q9NVE4 849 aa8.62□□□□□ -1.03
PRPF40A-210ENST00000489741 TLR7Q9NYK1 1049 aaKnown RBP8.62□□□□□ -1.03
PRPF40A-210ENST00000489741 SRP68Q9UHB9 627 aaKnown RBP8.62□□□□□ -1.03
PRPF40A-210ENST00000489741 MTMR7Q9Y216 660 aa8.62□□□□□ -1.03
PRPF40A-210ENST00000489741 FNDC3AQ9Y2H6 1198 aaKnown RBP8.62□□□□□ -1.03
PRPF40A-210ENST00000489741 CYP19A1P11511 503 aaPredicted RBP8.61□□□□□ -1.03
PRPF40A-210ENST00000489741 NID1P14543 1247 aa8.61□□□□□ -1.03
PRPF40A-210ENST00000489741 HSPA6P17066 643 aa8.61□□□□□ -1.03
PRPF40A-210ENST00000489741 EIF2AK2P19525 551 aaKnown RBP8.61□□□□□ -1.03
PRPF40A-210ENST00000489741 NRLP54845 237 aa8.61□□□□□ -1.03
PRPF40A-210ENST00000489741 PLAURQ03405 335 aa8.61□□□□□ -1.03
PRPF40A-210ENST00000489741 DDR1Q08345 913 aa8.61□□□□□ -1.03
PRPF40A-210ENST00000489741 MTHFSDQ2M296 383 aaKnown RBP8.61□□□□□ -1.03
PRPF40A-210ENST00000489741 ELMSAN1Q6PJG2 1045 aa8.61□□□□□ -1.03
PRPF40A-210ENST00000489741 DNAJC10Q8IXB1 793 aa8.61□□□□□ -1.03
PRPF40A-210ENST00000489741 SPOCK3Q9BQ16 436 aa8.61□□□□□ -1.03
PRPF40A-210ENST00000489741 USTQ9Y2C2 406 aa8.61□□□□□ -1.03
PRPF40A-210ENST00000489741 ZBTB42B2RXF5 422 aa8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 FAM229AH3BQW9 127 aa8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 POLRMTO00411 1230 aaKnown RBP8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 MMP20O60882 483 aa8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 ITGB2P05107 769 aa8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 TRIM28Q13263 835 aaKnown RBP8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 SLC39A6Q13433 755 aa8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 COL9A3Q14050 684 aaPredicted RBP8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 HFE2Q6ZVN8 426 aa8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 ATCAYQ86WG3 371 aa8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 ZNF526Q8TF50 670 aaPredicted RBP8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 NSUN5Q96P11 429 aaKnown RBP8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 CICQ96RK0 1608 aaPredicted RBP8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 NPC1L1Q9UHC9 1359 aa8.6□□□□□ -1.03
PRPF40A-210ENST00000489741 SOS1Q07889 1333 aaPredicted RBP8.59□□□□□ -1.03
PRPF40A-210ENST00000489741 MYH14Q7Z406 1995 aaKnown RBP8.59□□□□□ -1.03
PRPF40A-210ENST00000489741 DIAPH1O60610 1272 aaKnown RBP8.59□□□□□ -1.03
PRPF40A-210ENST00000489741 HMOX1P09601 288 aa8.59□□□□□ -1.03
PRPF40A-210ENST00000489741 AFF1P51825 1210 aaKnown RBP8.59□□□□□ -1.03
PRPF40A-210ENST00000489741 PERM1Q5SV97 790 aa8.59□□□□□ -1.03
PRPF40A-210ENST00000489741 B4GALNT3Q6L9W6 998 aa8.59□□□□□ -1.03
PRPF40A-210ENST00000489741 ARHGAP27Q6ZUM4 889 aa8.59□□□□□ -1.03
PRPF40A-210ENST00000489741 PIM2Q9P1W9 311 aa8.59□□□□□ -1.03
PRPF40A-210ENST00000489741 KIAA1551Q9HCM1 1747 aa8.58□□□□□ -1.04
PRPF40A-210ENST00000489741 C1QTNF9BB2RNN3 333 aa8.58□□□□□ -1.04
PRPF40A-210ENST00000489741 MPSTP25325 297 aa8.58□□□□□ -1.04
PRPF40A-210ENST00000489741 MTMR3Q13615 1198 aa8.58□□□□□ -1.04
PRPF40A-210ENST00000489741 NOM1Q5C9Z4 860 aaKnown RBP8.58□□□□□ -1.04
PRPF40A-210ENST00000489741 USPL1Q5W0Q7 1092 aa8.58□□□□□ -1.04
PRPF40A-210ENST00000489741 LPIN3Q9BQK8 851 aa8.58□□□□□ -1.04
PRPF40A-210ENST00000489741 FRRS1LQ9P0K9 344 aa8.58□□□□□ -1.04
PRPF40A-210ENST00000489741 NARFQ9UHQ1 456 aa8.58□□□□□ -1.04
PRPF40A-210ENST00000489741 KIF13BQ9NQT8 1826 aa8.58□□□□□ -1.04
PRPF40A-210ENST00000489741 MRC1P22897 1456 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 COL5A3P25940 1745 aaPredicted RBP8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 TOMM70O94826 608 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 GHRHP01286 108 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 PCSK2P16519 638 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 CHRNA5P30532 468 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 SOX18P35713 384 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 CHRNA4P43681 627 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 EIF5P55010 431 aaKnown RBP8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 RAC1P63000 192 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 NFIXQ14938 502 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 DALRD3Q5D0E6 543 aaKnown RBP8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 CC2D1BQ5T0F9 858 aaKnown RBP8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 TTC39BQ5VTQ0 682 aaPredicted RBP8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 C9orf131Q5VYM1 1079 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 CD163Q86VB7 1156 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 DNAJC5GQ8N7S2 189 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 TTC16Q8NEE8 873 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 IL17REQ8NFR9 667 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 SMG9Q9H0W8 520 aaKnown RBP8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 RBSNQ9H1K0 784 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 ZBTB1Q9Y2K1 713 aa8.57□□□□□ -1.04
PRPF40A-210ENST00000489741 J3QW42 95 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms