RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 TSPY8P0CW00 308 aa25.37■■□□□ 1.65
SMC4-221ENST00000489573 GJB2P29033 226 aa25.37■■□□□ 1.65
SMC4-221ENST00000489573 SYNE3Q6ZMZ3 975 aa25.37■■□□□ 1.65
SMC4-221ENST00000489573 NCOA5Q9HCD5 579 aaKnown RBP25.37■■□□□ 1.65
SMC4-221ENST00000489573 DDTLA6NHG4 134 aaPredicted RBP25.36■■□□□ 1.65
SMC4-221ENST00000489573 CCDC178Q5BJE1 867 aa25.36■■□□□ 1.65
SMC4-221ENST00000489573 IFIT1BQ5T764 474 aaKnown RBP25.36■■□□□ 1.65
SMC4-221ENST00000489573 FKBP1CQ5VVH2 108 aa25.36■■□□□ 1.65
SMC4-221ENST00000489573 ZSCAN29Q8IWY8 852 aaPredicted RBP25.36■■□□□ 1.65
SMC4-221ENST00000489573 TAOK2Q9UL54 1235 aa25.36■■□□□ 1.65
SMC4-221ENST00000489573 TCP10L2B9ZVM9 353 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 WNT10BO00744 389 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 METAP2P50579 478 aaKnown RBP eCLIP25.35■■□□□ 1.65
SMC4-221ENST00000489573 RAB3GAP1Q15042 981 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 SH3BP5LQ7L8J4 393 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 MICU3Q86XE3 530 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 RAB11FIP4Q86YS3 637 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 GPC2Q8N158 579 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 TCP11L1Q9NUJ3 509 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 RNF181Q9P0P0 153 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 PI4KBQ9UBF8 816 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 CNOT7Q9UIV1 285 aaKnown RBP25.35■■□□□ 1.65
SMC4-221ENST00000489573 DCAF8L1A6NGE4 600 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 DHX16O60231 1041 aaKnown RBP25.35■■□□□ 1.65
SMC4-221ENST00000489573 NMT2O60551 498 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 RCAN1P53805 252 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 NSUN7Q8NE18 718 aaKnown RBP25.35■■□□□ 1.65
SMC4-221ENST00000489573 VEZTQ9HBM0 779 aa25.35■■□□□ 1.65
SMC4-221ENST00000489573 NID2Q14112 1375 aa25.34■■□□□ 1.65
SMC4-221ENST00000489573 GOLGA8AA7E2F4 631 aa25.34■■□□□ 1.65
SMC4-221ENST00000489573 NBPF9Q3BBW0 867 aa25.34■■□□□ 1.65
SMC4-221ENST00000489573 ZNF654Q8IZM8 581 aa25.34■■□□□ 1.65
SMC4-221ENST00000489573 CRACR2BQ8N4Y2 399 aaPredicted RBP25.34■■□□□ 1.65
SMC4-221ENST00000489573 NEDD1Q8NHV4 660 aa25.34■■□□□ 1.65
SMC4-221ENST00000489573 SMARCC2Q8TAQ2 1214 aa25.34■■□□□ 1.65
SMC4-221ENST00000489573 SIPA1L1O43166 1804 aa25.33■■□□□ 1.65
SMC4-221ENST00000489573 JAK2O60674 1132 aa25.33■■□□□ 1.65
SMC4-221ENST00000489573 CTDNEP1O95476 244 aa25.33■■□□□ 1.65
SMC4-221ENST00000489573 FAM151AQ8WW52 585 aa25.33■■□□□ 1.65
SMC4-221ENST00000489573 MYL10Q9BUA6 226 aa25.33■■□□□ 1.65
SMC4-221ENST00000489573 PLIN4Q96Q06 1357 aa25.33■■□□□ 1.64
SMC4-221ENST00000489573 PTPDC1A2A3K4 754 aa25.32■■□□□ 1.64
SMC4-221ENST00000489573 DTNBO60941 627 aa25.32■■□□□ 1.64
SMC4-221ENST00000489573 SHMT1P34896 483 aa25.32■■□□□ 1.64
SMC4-221ENST00000489573 HMGN5P82970 282 aaKnown RBP25.32■■□□□ 1.64
SMC4-221ENST00000489573 RBM26Q5T8P6 1007 aaKnown RBP25.32■■□□□ 1.64
SMC4-221ENST00000489573 DGKHQ86XP1 1220 aa25.32■■□□□ 1.64
SMC4-221ENST00000489573 IL17RBQ9NRM6 502 aa25.32■■□□□ 1.64
SMC4-221ENST00000489573 CNTNAP1P78357 1384 aa25.32■■□□□ 1.64
SMC4-221ENST00000489573 H7C1D1 291 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 CPLX1O14810 134 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 RXRAP19793 462 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 PKP1Q13835 747 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 GPR162Q16538 588 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 C9orf131Q5VYM1 1079 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 CATIPQ7Z7H3 387 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 FAM83AQ86UY5 434 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 FOXP4Q8IVH2 680 aaPredicted RBP25.31■■□□□ 1.64
SMC4-221ENST00000489573 ANKS1AQ92625 1134 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 TRIM34Q9BYJ4 488 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 EGFRP00533 1210 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 YY1P25490 414 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 KIF4BQ2VIQ3 1234 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 RCSD1Q6JBY9 416 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 SAMD7Q7Z3H4 446 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 DNAJC18Q9H819 358 aa25.31■■□□□ 1.64
SMC4-221ENST00000489573 DDAH1O94760 285 aa25.3■■□□□ 1.64
SMC4-221ENST00000489573 METTL16Q86W50 562 aaKnown RBP25.3■■□□□ 1.64
SMC4-221ENST00000489573 CCDC144CPQ8IYA2 1237 aa25.3■■□□□ 1.64
SMC4-221ENST00000489573 CSRNP1Q96S65 589 aa25.3■■□□□ 1.64
SMC4-221ENST00000489573 GPRC5DQ9NZD1 345 aa25.3■■□□□ 1.64
SMC4-221ENST00000489573 BRD1O95696 1058 aa25.29■■□□□ 1.64
SMC4-221ENST00000489573 CALM1P0DP23 149 aa25.29■■□□□ 1.64
SMC4-221ENST00000489573 CALM2P0DP24 149 aa25.29■■□□□ 1.64
SMC4-221ENST00000489573 CALM3P0DP25 149 aa25.29■■□□□ 1.64
SMC4-221ENST00000489573 AKR1B1P15121 316 aa25.29■■□□□ 1.64
SMC4-221ENST00000489573 PDCP20941 246 aa25.29■■□□□ 1.64
SMC4-221ENST00000489573 SYT1P21579 422 aa25.29■■□□□ 1.64
SMC4-221ENST00000489573 RTN1Q16799 776 aa25.29■■□□□ 1.64
SMC4-221ENST00000489573 TBC1D10BQ4KMP7 808 aaPredicted RBP25.29■■□□□ 1.64
SMC4-221ENST00000489573 CPLX2Q6PUV4 134 aaKnown RBP25.29■■□□□ 1.64
SMC4-221ENST00000489573 NUP133Q8WUM0 1156 aa25.29■■□□□ 1.64
SMC4-221ENST00000489573 DDX11Q96FC9 970 aa25.29■■□□□ 1.64
SMC4-221ENST00000489573 CDKL5O76039 1030 aa25.28■■□□□ 1.64
SMC4-221ENST00000489573 CDC27P30260 824 aa25.28■■□□□ 1.64
SMC4-221ENST00000489573 TNNI2P48788 182 aa25.28■■□□□ 1.64
SMC4-221ENST00000489573 FAM184AQ8NB25 1140 aa25.28■■□□□ 1.64
SMC4-221ENST00000489573 CCDC17Q96LX7 622 aa25.28■■□□□ 1.64
SMC4-221ENST00000489573 KAT14Q9H8E8 782 aa25.28■■□□□ 1.64
SMC4-221ENST00000489573 ZDHHC9Q9Y397 364 aa25.28■■□□□ 1.64
SMC4-221ENST00000489573 KIF3AQ9Y496 699 aa25.28■■□□□ 1.64
SMC4-221ENST00000489573 MYH8P13535 1937 aa25.28■■□□□ 1.64
SMC4-221ENST00000489573 STX6O43752 255 aa25.27■■□□□ 1.64
SMC4-221ENST00000489573 PDIA4P13667 645 aaKnown RBP25.27■■□□□ 1.64
SMC4-221ENST00000489573 ADD1P35611 737 aaKnown RBP25.27■■□□□ 1.64
SMC4-221ENST00000489573 TNFAIP1Q13829 316 aa25.27■■□□□ 1.64
SMC4-221ENST00000489573 TNPO1Q92973 898 aaKnown RBP25.27■■□□□ 1.64
SMC4-221ENST00000489573 FAM217BQ9NTX9 383 aaPredicted RBP25.27■■□□□ 1.64
SMC4-221ENST00000489573 WDR33Q9C0J8 1336 aaKnown RBP25.27■■□□□ 1.64
SMC4-221ENST00000489573 CCDC196A0A1B0GTZ2 297 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms