RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 TRIM6Q9C030 488 aaPredicted RBP7.02□□□□□ -1.28
VPS13D-209ENST00000487188 MEFVO15553 781 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-209ENST00000487188 KRT86O43790 486 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 CHGBP05060 677 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 FDPSP14324 419 aaKnown RBP7.02□□□□□ -1.29
VPS13D-209ENST00000487188 IDEP14735 1019 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 GPTP24298 496 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 BIRC2Q13490 618 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 E2F5Q15329 346 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 CCDC40Q4G0X9 1142 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 MICU3Q86XE3 530 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 GRAMD1CQ8IYS0 662 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 KBTBD3Q8NAB2 608 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 STAG1Q8WVM7 1258 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 JAKMIP2Q96AA8 810 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 VPS16Q9H269 839 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 BCCIPQ9P287 314 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS13D-209ENST00000487188 DBNLQ9UJU6 430 aaKnown RBP7.02□□□□□ -1.29
VPS13D-209ENST00000487188 ZNF609O15014 1411 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 SBNO1A3KN83 1393 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 ZNF335Q9H4Z2 1342 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-209ENST00000487188 PPP1R12AO14974 1030 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-209ENST00000487188 SRGAP2O75044 1071 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 PRPF6O94906 941 aaKnown RBP7.02□□□□□ -1.29
VPS13D-209ENST00000487188 GCKP35557 465 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 IARSP41252 1262 aaKnown RBP7.02□□□□□ -1.29
VPS13D-209ENST00000487188 IFT88Q13099 833 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 C1orf141Q5JVX7 400 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 CFAP58Q5T655 872 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 RESP18Q5W5W9 173 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 KCTD16Q68DU8 428 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 CCDC50Q8IVM0 306 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 NCOA7Q8NI08 942 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 RSRC1Q96IZ7 334 aaKnown RBP7.02□□□□□ -1.29
VPS13D-209ENST00000487188 HELLSQ9NRZ9 838 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 KLC4Q9NSK0 619 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 PAG1Q9NWQ8 432 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 HDAC6Q9UBN7 1215 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 FAM184BQ9ULE4 1060 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 KDRP35968 1356 aa7.02□□□□□ -1.29
VPS13D-209ENST00000487188 XRN1Q8IZH2 1706 aaKnown RBP7.02□□□□□ -1.29
VPS13D-209ENST00000487188 TMCO5BA8MYB1 307 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 HOXB7P09629 217 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 GCFC2P16383 781 aaKnown RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 RXRAP19793 462 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 CDC27P30260 824 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 EIF4A1P60842 406 aaKnown RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 C2orf54Q08AI8 447 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 SPATA1Q5VX52 437 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 ZNF530Q6P9A1 599 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 MAATS1Q7Z4T9 603 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 TEX11Q8IYF3 940 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 CEP120Q8N960 986 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 TRIML1Q8N9V2 468 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 PRPF38AQ8NAV1 312 aaKnown RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 FBXO41Q8TF61 875 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 CARD10Q9BWT7 1032 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 SETD1AO15047 1707 aaKnown RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 A0A1B0GTH6 734 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 IFIT1P09914 478 aaKnown RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 NAP1L1P55209 391 aaKnown RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 KRT83P78385 493 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 SPAG1Q07617 926 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 SF3B2Q13435 895 aaKnown RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 TRIM14Q14142 442 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 SLC9C2Q5TAH2 1124 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 AMOTL1Q8IY63 956 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 MMS19Q96T76 1030 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 TEX13AQ9BXU3 409 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 HAUS4Q9H6D7 363 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 TAB2Q9NYJ8 693 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 CTNND2Q9UQB3 1225 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 TARSL2A2RTX5 802 aaKnown RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 GOLGA8AA7E2F4 631 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 ERCC3P19447 782 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 CYLC1P35663 651 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 PAFAH1B1P43034 410 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 EXOSC10Q01780 885 aaKnown RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 FKBP4Q02790 459 aaKnown RBP eCLIP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 NR1I3Q14994 352 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 MSL1Q68DK7 614 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 AIFM3Q96NN9 605 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 MYD88Q99836 296 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 CEP131Q9UPN4 1083 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 EPN1Q9Y6I3 576 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 FAM208AQ9UK61 1670 aaKnown RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 IGSF1Q8N6C5 1336 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 SALL1Q9NSC2 1324 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 ITSN1Q15811 1721 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 MACROD2A1Z1Q3 448 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 E7EVH7 732 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 HSPD1P10809 573 aaKnown RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 MYL6BP14649 208 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 ERCC5P28715 1186 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 RASSF8Q8NHQ8 419 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 ZKSCAN4Q969J2 545 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 MIEF2Q96C03 454 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 RBM33Q96EV2 1170 aaKnown RBP7.01□□□□□ -1.29
VPS13D-209ENST00000487188 SLC26A6Q9BXS9 759 aa7.01□□□□□ -1.29
VPS13D-209ENST00000487188 MAGEC2Q9UBF1 373 aaPredicted RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms