RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 VIMP08670 466 aaKnown RBP18.33■□□□□ 0.53
COL7A1-210ENST00000487017 FAM212AQ96EL1 285 aa18.33■□□□□ 0.53
COL7A1-210ENST00000487017 GLT8D2Q9H1C3 349 aa18.33■□□□□ 0.52
COL7A1-210ENST00000487017 KIAA1524Q8TCG1 905 aa18.33■□□□□ 0.52
COL7A1-210ENST00000487017 TSKSQ9UJT2 592 aa18.33■□□□□ 0.52
COL7A1-210ENST00000487017 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.33■□□□□ 0.52
COL7A1-210ENST00000487017 TAF5LO75529 589 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 ADKP55263 362 aaKnown RBP18.32■□□□□ 0.52
COL7A1-210ENST00000487017 LACTBP83111 547 aaPredicted RBP18.32■□□□□ 0.52
COL7A1-210ENST00000487017 BEND3Q5T5X7 828 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 GBP6Q6ZN66 633 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 POTEDQ86YR6 584 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 PLCD3Q8N3E9 789 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 EYA3Q99504 573 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 VEZTQ9HBM0 779 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 GRM1Q13255 1194 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 SNX29Q8TEQ0 813 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 BLZF1Q9H2G9 400 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 VTI1AQ96AJ9 217 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 MRFAP1L1Q96HT8 127 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 PLEKHF1Q96S99 279 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 AATFQ9NY61 560 aaKnown RBP eCLIP18.32■□□□□ 0.52
COL7A1-210ENST00000487017 KDM5CP41229 1560 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 CEP128Q6ZU80 1094 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 INTS8Q75QN2 995 aaKnown RBP18.32■□□□□ 0.52
COL7A1-210ENST00000487017 UBL4BQ8N7F7 174 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 RAB3IL1Q8TBN0 382 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 LZTS2Q9BRK4 669 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 CSRNP2Q9H175 543 aa18.32■□□□□ 0.52
COL7A1-210ENST00000487017 KRT5P13647 590 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 PAK2Q13177 524 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 EAF2Q96CJ1 260 aaPredicted RBP18.31■□□□□ 0.52
COL7A1-210ENST00000487017 CABP7Q86V35 215 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 IQCDQ96DY2 449 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 VPS54Q9P1Q0 977 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 STK24Q9Y6E0 443 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 INPP5BP32019 993 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 RUFY4Q6ZNE9 571 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 RBM17Q96I25 401 aaKnown RBP18.31■□□□□ 0.52
COL7A1-210ENST00000487017 ZNF496Q96IT1 587 aaPredicted RBP18.31■□□□□ 0.52
COL7A1-210ENST00000487017 ADCY7P51828 1080 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 CERS3Q8IU89 383 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 LRRC8AQ8IWT6 810 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.31■□□□□ 0.52
COL7A1-210ENST00000487017 RSRC1Q96IZ7 334 aaKnown RBP18.31■□□□□ 0.52
COL7A1-210ENST00000487017 WDR70Q9NW82 654 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 CCDC160A6NGH7 325 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 BRD3Q15059 726 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 CFAP221Q4G0U5 840 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 WDR44Q5JSH3 913 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 CCDC84Q86UT8 332 aaPredicted RBP18.31■□□□□ 0.52
COL7A1-210ENST00000487017 FCHSD1Q86WN1 690 aa18.31■□□□□ 0.52
COL7A1-210ENST00000487017 LRMPQ12912 555 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 SYNMO15061 1565 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 MAP3K9P80192 1104 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 STAMQ92783 540 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 RPGRIP1Q96KN7 1286 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 IFT74Q96LB3 600 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 TRIM7Q9C029 511 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 STIM2Q9P246 746 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 B4DLN1 442 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 CMA1P23946 247 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 ALDH3A1P30838 453 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 PPFIA1Q13136 1202 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 DYMQ7RTS9 669 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 TSC1Q92574 1164 aa18.3■□□□□ 0.52
COL7A1-210ENST00000487017 PLEKHG3A1L390 1219 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 CEP104O60308 925 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 WHAMMP3Q1A5X7 153 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 NOSTRINQ8IVI9 506 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 LSG1Q9H089 658 aaKnown RBP18.29■□□□□ 0.52
COL7A1-210ENST00000487017 STAP2Q9UGK3 403 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 NDC80O14777 642 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 TXNDC16Q9P2K2 825 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 CHMP2AO43633 222 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 PSMC4P43686 418 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 NBPF14Q5TI25 921 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 WDR66Q8TBY9 1149 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 GIGYF1O75420 1035 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-210ENST00000487017 UFL1O94874 794 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 ARID4AP29374 1257 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-210ENST00000487017 CALCRLQ16602 461 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 HERC4Q5GLZ8 1057 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-210ENST00000487017 SFMBT2Q5VUG0 894 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 SND1Q7KZF4 910 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL7A1-210ENST00000487017 CROCCP2Q86T23 111 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 EIF6P56537 245 aaKnown RBP18.29■□□□□ 0.52
COL7A1-210ENST00000487017 KLHL30Q0D2K2 578 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 FNBP1Q96RU3 617 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 HAUS7Q99871 368 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 NUCKS1Q9H1E3 243 aaKnown RBP18.29■□□□□ 0.52
COL7A1-210ENST00000487017 ABCA5Q8WWZ7 1642 aa18.29■□□□□ 0.52
COL7A1-210ENST00000487017 ZMYM6O95789 1325 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 PBRM1Q86U86 1689 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 ERCC5P28715 1186 aaPredicted RBP18.28■□□□□ 0.52
COL7A1-210ENST00000487017 PPARAQ07869 468 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 KLHL7Q8IXQ5 586 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 MYOM2P54296 1465 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 BIRC3Q13489 604 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 ZNF654Q8IZM8 581 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms