RNA–Protein interactions for RNA: ENST00000486828.6

PDLIM7-207, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-207ENST00000486828 ELOA2Q8IYF1 753 aaPredicted RBP20.69■□□□□ 0.9
PDLIM7-207ENST00000486828 ENAHQ8N8S7 591 aaPredicted RBP20.69■□□□□ 0.9
PDLIM7-207ENST00000486828 SETDB2Q96T68 719 aa20.69■□□□□ 0.9
PDLIM7-207ENST00000486828 PODXL2Q9NZ53 605 aa20.69■□□□□ 0.9
PDLIM7-207ENST00000486828 KLRK1P26718 216 aa20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 NSUN4Q96CB9 384 aaKnown RBP20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 ANKRD2Q9GZV1 360 aa20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 OSBPL5Q9H0X9 879 aaPredicted RBP20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 BAZ2AQ9UIF9 1905 aaKnown RBP20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 CYP2D7A0A087X1C5 515 aa20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 PTPREP23469 700 aa20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 PNOCQ13519 176 aa20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 LONRF3Q496Y0 759 aa20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 CTR9Q6PD62 1173 aa20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 METTL16Q86W50 562 aaKnown RBP20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 NBPF5PQ86XG9 351 aaPredicted RBP20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 SRP68Q9UHB9 627 aaKnown RBP20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 FBXO2Q9UK22 296 aaPredicted RBP20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 DLEC1Q9Y238 1755 aa20.68■□□□□ 0.9
PDLIM7-207ENST00000486828 CCZ1BP86790 482 aa20.67■□□□□ 0.9
PDLIM7-207ENST00000486828 CCZ1P86791 482 aaPredicted RBP20.67■□□□□ 0.9
PDLIM7-207ENST00000486828 NR5A1Q13285 461 aa20.67■□□□□ 0.9
PDLIM7-207ENST00000486828 IFIT1BQ5T764 474 aaKnown RBP20.67■□□□□ 0.9
PDLIM7-207ENST00000486828 MTERF4Q7Z6M4 381 aaKnown RBP20.67■□□□□ 0.9
PDLIM7-207ENST00000486828 IQCA1Q86XH1 822 aa20.67■□□□□ 0.9
PDLIM7-207ENST00000486828 CNNM3Q8NE01 707 aa20.67■□□□□ 0.9
PDLIM7-207ENST00000486828 XPO4Q9C0E2 1151 aaKnown RBP20.67■□□□□ 0.9
PDLIM7-207ENST00000486828 IFNKQ9P0W0 207 aa20.67■□□□□ 0.9
PDLIM7-207ENST00000486828 MYH13Q9UKX3 1938 aa20.67■□□□□ 0.9
PDLIM7-207ENST00000486828 SMC2O95347 1197 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 SKILP12757 684 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 HIBADHP31937 336 aaKnown RBP20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 AKAP17AQ02040 695 aaKnown RBP20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 MECOMQ03112 1051 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 ISM2Q6H9L7 571 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 CATIPQ7Z7H3 387 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 C16orf45Q96MC5 204 aaPredicted RBP20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 RBM28Q9NW13 759 aaKnown RBP20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 CEP131Q9UPN4 1083 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 MYH2Q9UKX2 1941 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 RIOK3O14730 519 aaKnown RBP20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 ZPR1O75312 459 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 CALM1P0DP23 149 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 CALM2P0DP24 149 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 CALM3P0DP25 149 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 XBP1P17861 261 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 FUT2Q10981 343 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 ZNF579Q8NAF0 562 aaKnown RBP20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 OXER1Q8TDS5 423 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 PCDHB6Q9Y5E3 794 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 MYH6P13533 1939 aa20.66■□□□□ 0.9
PDLIM7-207ENST00000486828 MAST2Q6P0Q8 1798 aa20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 USP17L12C9JPN9 530 aa20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 USP17L21D6R901 530 aa20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 PRPF3O43395 683 aaKnown RBP20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 PKN1Q16512 942 aa20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 TPD52L1Q16890 204 aaPredicted RBP20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 TPTE2Q6XPS3 522 aa20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 UPF1Q92900 1129 aaKnown RBP eCLIP20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 HOOK1Q9UJC3 728 aaKnown RBP20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 GNPATO15228 680 aa20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 PRDM1O75626 825 aa20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 DDAH1O94760 285 aa20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 TNNT1P13805 278 aa20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 TMED8Q6PL24 325 aaPredicted RBP20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 CRNKL1Q9BZJ0 848 aaKnown RBP20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 HSD3B7Q9H2F3 369 aa20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 TFCP2L1Q9NZI6 479 aa20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 SRPRBQ9Y5M8 271 aaKnown RBP20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 MORC2Q9Y6X9 1032 aaPredicted RBP20.65■□□□□ 0.9
PDLIM7-207ENST00000486828 LAMB1P07942 1786 aa20.64■□□□□ 0.89
PDLIM7-207ENST00000486828 ZBTB22O15209 634 aa20.64■□□□□ 0.89
PDLIM7-207ENST00000486828 ORC4O43929 436 aa20.64■□□□□ 0.89
PDLIM7-207ENST00000486828 MDM2Q00987 491 aaPredicted RBP20.64■□□□□ 0.89
PDLIM7-207ENST00000486828 MYL5Q02045 173 aa20.64■□□□□ 0.89
PDLIM7-207ENST00000486828 GRIN1Q05586 938 aa20.64■□□□□ 0.89
PDLIM7-207ENST00000486828 TROAPQ12815 778 aa20.64■□□□□ 0.89
PDLIM7-207ENST00000486828 SPECC1Q5M775 1068 aa20.64■□□□□ 0.89
PDLIM7-207ENST00000486828 FOXP4Q8IVH2 680 aaPredicted RBP20.64■□□□□ 0.89
PDLIM7-207ENST00000486828 SHISA4Q96DD7 197 aa20.64■□□□□ 0.89
PDLIM7-207ENST00000486828 PHF20Q9BVI0 1012 aa20.64■□□□□ 0.89
PDLIM7-207ENST00000486828 PCDHA5Q9Y5H7 936 aa20.64■□□□□ 0.89
PDLIM7-207ENST00000486828 LMOD1P29536 600 aaPredicted RBP20.63■□□□□ 0.89
PDLIM7-207ENST00000486828 FANCCQ00597 558 aa20.63■□□□□ 0.89
PDLIM7-207ENST00000486828 DHX8Q14562 1220 aaKnown RBP20.63■□□□□ 0.89
PDLIM7-207ENST00000486828 OLFM4Q6UX06 510 aa20.63■□□□□ 0.89
PDLIM7-207ENST00000486828 CCDC150Q8NCX0 1101 aa20.63■□□□□ 0.89
PDLIM7-207ENST00000486828 CABP5Q9NP86 173 aa20.63■□□□□ 0.89
PDLIM7-207ENST00000486828 DCP1AQ9NPI6 582 aaPredicted RBP20.63■□□□□ 0.89
PDLIM7-207ENST00000486828 KCND1Q9NSA2 647 aa20.63■□□□□ 0.89
PDLIM7-207ENST00000486828 ATP8A2Q9NTI2 1148 aa20.63■□□□□ 0.89
PDLIM7-207ENST00000486828 AATFQ9NY61 560 aaKnown RBP eCLIP20.63■□□□□ 0.89
PDLIM7-207ENST00000486828 NOL10Q9BSC4 688 aaKnown RBP20.63■□□□□ 0.89
PDLIM7-207ENST00000486828 VPS54Q9P1Q0 977 aa20.63■□□□□ 0.89
PDLIM7-207ENST00000486828 RTCBQ9Y3I0 505 aaKnown RBP20.63■□□□□ 0.89
PDLIM7-207ENST00000486828 LY75O60449 1722 aa20.62■□□□□ 0.89
PDLIM7-207ENST00000486828 MYO1BO43795 1136 aa20.62■□□□□ 0.89
PDLIM7-207ENST00000486828 PLEKHA8P1O95397 391 aa20.62■□□□□ 0.89
PDLIM7-207ENST00000486828 APBA3O96018 575 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms