RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 PARP2Q9UGN5 583 aa6.29□□□□□ -1.4
VPS50-217ENST00000485140 EOMESO95936 686 aa6.28□□□□□ -1.4
VPS50-217ENST00000485140 YARSP54577 528 aaKnown RBP6.28□□□□□ -1.4
VPS50-217ENST00000485140 CCDC27Q2M243 656 aa6.28□□□□□ -1.4
VPS50-217ENST00000485140 LETMD1Q6P1Q0 360 aa6.28□□□□□ -1.4
VPS50-217ENST00000485140 SPACA3Q8IXA5 215 aa6.28□□□□□ -1.4
VPS50-217ENST00000485140 HEXIM2Q96MH2 286 aaKnown RBP6.28□□□□□ -1.4
VPS50-217ENST00000485140 KRTAP4-9Q9BYQ8 210 aa6.28□□□□□ -1.4
VPS50-217ENST00000485140 PITPNM2Q9BZ72 1349 aa6.27□□□□□ -1.41
VPS50-217ENST00000485140 GRK4P32298 578 aa6.27□□□□□ -1.41
VPS50-217ENST00000485140 AFMP43652 599 aa6.27□□□□□ -1.41
VPS50-217ENST00000485140 BNIP3Q12983 259 aa6.27□□□□□ -1.41
VPS50-217ENST00000485140 MLECQ14165 292 aa6.27□□□□□ -1.41
VPS50-217ENST00000485140 SLBPQ14493 270 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS50-217ENST00000485140 INPP5AQ14642 412 aa6.27□□□□□ -1.41
VPS50-217ENST00000485140 ZNF574Q6ZN55 896 aaPredicted RBP6.27□□□□□ -1.41
VPS50-217ENST00000485140 MIPEPQ99797 713 aa6.27□□□□□ -1.41
VPS50-217ENST00000485140 PLAGL2Q9UPG8 496 aa6.27□□□□□ -1.41
VPS50-217ENST00000485140 USP31Q70CQ4 1352 aa6.27□□□□□ -1.41
VPS50-217ENST00000485140 GFRA2O00451 464 aa6.26□□□□□ -1.41
VPS50-217ENST00000485140 LMNB2Q03252 620 aa6.26□□□□□ -1.41
VPS50-217ENST00000485140 ZP2Q05996 745 aa6.26□□□□□ -1.41
VPS50-217ENST00000485140 MPRIPQ6WCQ1 1025 aa6.26□□□□□ -1.41
VPS50-217ENST00000485140 DNAJC14Q6Y2X3 702 aaPredicted RBP6.26□□□□□ -1.41
VPS50-217ENST00000485140 TMPRSS7Q7RTY8 843 aa6.26□□□□□ -1.41
VPS50-217ENST00000485140 RELL1Q8IUW5 271 aa6.26□□□□□ -1.41
VPS50-217ENST00000485140 BHLHE22Q8NFJ8 381 aaPredicted RBP6.26□□□□□ -1.41
VPS50-217ENST00000485140 TRIT1Q9H3H1 467 aaKnown RBP6.26□□□□□ -1.41
VPS50-217ENST00000485140 MBNL3Q9NUK0 354 aaKnown RBP6.26□□□□□ -1.41
VPS50-217ENST00000485140 SLITRK5O94991 958 aa6.25□□□□□ -1.41
VPS50-217ENST00000485140 PAPLNO95428 1278 aa6.25□□□□□ -1.41
VPS50-217ENST00000485140 PGRP06401 933 aa6.25□□□□□ -1.41
VPS50-217ENST00000485140 RNASE1P07998 156 aaKnown RBP6.25□□□□□ -1.41
VPS50-217ENST00000485140 PKN1Q16512 942 aa6.25□□□□□ -1.41
VPS50-217ENST00000485140 NKPD1Q17RQ9 610 aa6.25□□□□□ -1.41
VPS50-217ENST00000485140 ZNF326Q5BKZ1 582 aaKnown RBP6.25□□□□□ -1.41
VPS50-217ENST00000485140 RASIP1Q5U651 963 aa6.25□□□□□ -1.41
VPS50-217ENST00000485140 WFDC3Q8IUB2 231 aa6.25□□□□□ -1.41
VPS50-217ENST00000485140 TMEM87BQ96K49 555 aa6.25□□□□□ -1.41
VPS50-217ENST00000485140 RSRP1Q9BUV0 290 aa6.25□□□□□ -1.41
VPS50-217ENST00000485140 KCNH3Q9ULD8 1083 aa6.25□□□□□ -1.41
VPS50-217ENST00000485140 ROBO2Q9HCK4 1378 aa6.24□□□□□ -1.41
VPS50-217ENST00000485140 FARP2O94887 1054 aaPredicted RBP6.24□□□□□ -1.41
VPS50-217ENST00000485140 PRAMEF13Q5VWM6 474 aa6.24□□□□□ -1.41
VPS50-217ENST00000485140 FBXO33Q7Z6M2 555 aa6.24□□□□□ -1.41
VPS50-217ENST00000485140 MCATQ8IVS2 390 aaKnown RBP6.24□□□□□ -1.41
VPS50-217ENST00000485140 PHC3Q8NDX5 983 aa6.24□□□□□ -1.41
VPS50-217ENST00000485140 FAM168AQ92567 244 aa6.24□□□□□ -1.41
VPS50-217ENST00000485140 SLC38A3Q99624 504 aa6.24□□□□□ -1.41
VPS50-217ENST00000485140 KRTAP4-2Q9BYR5 136 aa6.24□□□□□ -1.41
VPS50-217ENST00000485140 VTI1BQ9UEU0 232 aa6.24□□□□□ -1.41
VPS50-217ENST00000485140 RAC2P15153 192 aa6.23□□□□□ -1.41
VPS50-217ENST00000485140 CHMP4BP1P59074 171 aa6.23□□□□□ -1.41
VPS50-217ENST00000485140 PTPN11Q06124 597 aaPredicted RBP6.23□□□□□ -1.41
VPS50-217ENST00000485140 SEPT6Q14141 434 aa6.23□□□□□ -1.41
VPS50-217ENST00000485140 TMEM201Q5SNT2 666 aa6.23□□□□□ -1.41
VPS50-217ENST00000485140 OGFOD2Q6N063 350 aa6.23□□□□□ -1.41
VPS50-217ENST00000485140 ZSWIM9Q86XI8 627 aa6.23□□□□□ -1.41
VPS50-217ENST00000485140 LRRN4CLQ8ND94 238 aa6.23□□□□□ -1.41
VPS50-217ENST00000485140 SYTL4Q96C24 671 aaPredicted RBP6.23□□□□□ -1.41
VPS50-217ENST00000485140 FBRSQ9HAH7 460 aa6.23□□□□□ -1.41
VPS50-217ENST00000485140 CAPN6Q9Y6Q1 641 aa6.23□□□□□ -1.41
VPS50-217ENST00000485140 TFE3P19532 575 aaPredicted RBP6.22□□□□□ -1.41
VPS50-217ENST00000485140 GDNFP39905 211 aa6.22□□□□□ -1.41
VPS50-217ENST00000485140 CYB5D2Q8WUJ1 264 aa6.22□□□□□ -1.41
VPS50-217ENST00000485140 GATAD2BQ8WXI9 593 aa6.22□□□□□ -1.41
VPS50-217ENST00000485140 TMEM74Q96NL1 305 aa6.22□□□□□ -1.41
VPS50-217ENST00000485140 GPATCH2Q9NW75 528 aa6.22□□□□□ -1.41
VPS50-217ENST00000485140 CILPO75339 1184 aa6.21□□□□□ -1.42
VPS50-217ENST00000485140 KCNMB1Q16558 191 aa6.21□□□□□ -1.42
VPS50-217ENST00000485140 MAP3K11Q16584 847 aa6.21□□□□□ -1.42
VPS50-217ENST00000485140 MEI1Q5TIA1 1274 aa6.21□□□□□ -1.42
VPS50-217ENST00000485140 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.21□□□□□ -1.42
VPS50-217ENST00000485140 UBE3DQ7Z6J8 389 aa6.21□□□□□ -1.42
VPS50-217ENST00000485140 SLFN12Q8IYM2 578 aa6.21□□□□□ -1.42
VPS50-217ENST00000485140 PPP1R16BQ96T49 567 aa6.21□□□□□ -1.42
VPS50-217ENST00000485140 CEP131Q9UPN4 1083 aa6.21□□□□□ -1.42
VPS50-217ENST00000485140 PRR36Q9H6K5 1346 aa6.21□□□□□ -1.42
VPS50-217ENST00000485140 ARID1BQ8NFD5 2236 aaPredicted RBP6.21□□□□□ -1.42
VPS50-217ENST00000485140 CAMK2GQ13555 558 aaPredicted RBP6.2□□□□□ -1.42
VPS50-217ENST00000485140 MPP2Q14168 576 aa6.2□□□□□ -1.42
VPS50-217ENST00000485140 NKG7Q16617 165 aa6.2□□□□□ -1.42
VPS50-217ENST00000485140 KSR1Q8IVT5 923 aa6.2□□□□□ -1.42
VPS50-217ENST00000485140 FAM84AQ96KN4 292 aa6.2□□□□□ -1.42
VPS50-217ENST00000485140 HSPA12BQ96MM6 686 aa6.2□□□□□ -1.42
VPS50-217ENST00000485140 SEMA3GQ9NS98 782 aa6.2□□□□□ -1.42
VPS50-217ENST00000485140 TJP2Q9UDY2 1190 aa6.2□□□□□ -1.42
VPS50-217ENST00000485140 ADAMTS6Q9UKP5 1117 aa6.2□□□□□ -1.42
VPS50-217ENST00000485140 PCDHB5Q9Y5E4 795 aa6.2□□□□□ -1.42
VPS50-217ENST00000485140 ST14Q9Y5Y6 855 aa6.2□□□□□ -1.42
VPS50-217ENST00000485140 PLCG1P19174 1290 aa6.19□□□□□ -1.42
VPS50-217ENST00000485140 GBP2P32456 591 aaPredicted RBP6.19□□□□□ -1.42
VPS50-217ENST00000485140 CWF19L2Q2TBE0 894 aaKnown RBP6.19□□□□□ -1.42
VPS50-217ENST00000485140 CDKAL1Q5VV42 579 aa6.19□□□□□ -1.42
VPS50-217ENST00000485140 RNF141Q8WVD5 230 aa6.19□□□□□ -1.42
VPS50-217ENST00000485140 DHX38Q92620 1227 aaKnown RBP6.19□□□□□ -1.42
VPS50-217ENST00000485140 JARID2Q92833 1246 aaPredicted RBP6.19□□□□□ -1.42
VPS50-217ENST00000485140 ALPK1Q96QP1 1244 aa6.19□□□□□ -1.42
VPS50-217ENST00000485140 ASPNQ9BXN1 380 aa6.19□□□□□ -1.42
VPS50-217ENST00000485140 CTNND2Q9UQB3 1225 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms