RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 NEFMP07197 916 aa11.28□□□□□ -0.6
MCF2-207ENST00000483690 RAG1P15918 1043 aa11.28□□□□□ -0.6
MCF2-207ENST00000483690 NRG1Q02297 640 aaPredicted RBP11.28□□□□□ -0.6
MCF2-207ENST00000483690 INTS3Q68E01 1043 aaKnown RBP11.28□□□□□ -0.6
MCF2-207ENST00000483690 C2CD4AQ8NCU7 369 aaPredicted RBP11.28□□□□□ -0.6
MCF2-207ENST00000483690 GSX1Q9H4S2 264 aaPredicted RBP11.28□□□□□ -0.6
MCF2-207ENST00000483690 SSU72Q9NP77 194 aaKnown RBP11.28□□□□□ -0.6
MCF2-207ENST00000483690 ST7Q9NRC1 585 aa11.28□□□□□ -0.6
MCF2-207ENST00000483690 TMA7Q9Y2S6 64 aaKnown RBP11.28□□□□□ -0.6
MCF2-207ENST00000483690 CCDC85CA6NKD9 419 aa11.27□□□□□ -0.61
MCF2-207ENST00000483690 C9orf172C9J069 976 aa11.27□□□□□ -0.61
MCF2-207ENST00000483690 APBA3O96018 575 aa11.27□□□□□ -0.61
MCF2-207ENST00000483690 GLB1P16278 677 aa11.27□□□□□ -0.61
MCF2-207ENST00000483690 INSM1Q01101 510 aaPredicted RBP11.27□□□□□ -0.61
MCF2-207ENST00000483690 SLC6A19Q695T7 634 aa11.27□□□□□ -0.61
MCF2-207ENST00000483690 MRPL41Q8IXM3 137 aaKnown RBP11.27□□□□□ -0.61
MCF2-207ENST00000483690 ISL2Q96A47 359 aa11.27□□□□□ -0.61
MCF2-207ENST00000483690 FBRSQ9HAH7 460 aa11.27□□□□□ -0.61
MCF2-207ENST00000483690 FAM105AQ9NUU6 356 aa11.27□□□□□ -0.61
MCF2-207ENST00000483690 UPK3BL1B0FP48 263 aa11.26□□□□□ -0.61
MCF2-207ENST00000483690 UPK3BL2E5RIL1 263 aa11.26□□□□□ -0.61
MCF2-207ENST00000483690 TNFRSF10CO14798 259 aa11.26□□□□□ -0.61
MCF2-207ENST00000483690 GAS2O43903 313 aaKnown RBP11.26□□□□□ -0.61
MCF2-207ENST00000483690 ACRP10323 421 aa11.26□□□□□ -0.61
MCF2-207ENST00000483690 SLFN12Q8IYM2 578 aa11.26□□□□□ -0.61
MCF2-207ENST00000483690 SMYD4Q8IYR2 804 aaPredicted RBP11.26□□□□□ -0.61
MCF2-207ENST00000483690 FAM177A1Q8N128 213 aaPredicted RBP11.26□□□□□ -0.61
MCF2-207ENST00000483690 DEPDC7Q96QD5 511 aa11.26□□□□□ -0.61
MCF2-207ENST00000483690 SNTG2Q9NY99 539 aa11.26□□□□□ -0.61
MCF2-207ENST00000483690 MAPK8IP1Q9UQF2 711 aa11.26□□□□□ -0.61
MCF2-207ENST00000483690 PREPP48147 710 aa11.25□□□□□ -0.61
MCF2-207ENST00000483690 ZNF746Q6NUN9 644 aaPredicted RBP11.25□□□□□ -0.61
MCF2-207ENST00000483690 UNC5AQ6ZN44 842 aa11.25□□□□□ -0.61
MCF2-207ENST00000483690 LRP10Q7Z4F1 713 aa11.25□□□□□ -0.61
MCF2-207ENST00000483690 PHACTR4Q8IZ21 702 aa11.25□□□□□ -0.61
MCF2-207ENST00000483690 SLC9A7Q96T83 725 aa11.25□□□□□ -0.61
MCF2-207ENST00000483690 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.24□□□□□ -0.61
MCF2-207ENST00000483690 COL8A1P27658 744 aa11.24□□□□□ -0.61
MCF2-207ENST00000483690 USP11P51784 963 aa11.24□□□□□ -0.61
MCF2-207ENST00000483690 RASA3Q14644 834 aa11.24□□□□□ -0.61
MCF2-207ENST00000483690 NKG7Q16617 165 aa11.24□□□□□ -0.61
MCF2-207ENST00000483690 CCDC113Q9H0I3 377 aa11.24□□□□□ -0.61
MCF2-207ENST00000483690 MSRB2Q9Y3D2 182 aa11.24□□□□□ -0.61
MCF2-207ENST00000483690 TLDC2A0PJX2 215 aa11.23□□□□□ -0.61
MCF2-207ENST00000483690 DDAH1O94760 285 aa11.23□□□□□ -0.61
MCF2-207ENST00000483690 SLBPQ14493 270 aaKnown RBP eCLIP11.23□□□□□ -0.61
MCF2-207ENST00000483690 ZYXQ15942 572 aaKnown RBP11.23□□□□□ -0.61
MCF2-207ENST00000483690 Q6ZS46 218 aa11.23□□□□□ -0.61
MCF2-207ENST00000483690 UBE3DQ7Z6J8 389 aa11.23□□□□□ -0.61
MCF2-207ENST00000483690 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.23□□□□□ -0.61
MCF2-207ENST00000483690 DPH2Q9BQC3 489 aaPredicted RBP11.23□□□□□ -0.61
MCF2-207ENST00000483690 PHAXQ9H814 394 aaKnown RBP11.23□□□□□ -0.61
MCF2-207ENST00000483690 PCOLCE2Q9UKZ9 415 aa11.23□□□□□ -0.61
MCF2-207ENST00000483690 FAM86C2PA6NEL3 165 aa11.22□□□□□ -0.61
MCF2-207ENST00000483690 RAB6AP20340 208 aa11.22□□□□□ -0.61
MCF2-207ENST00000483690 CAP2P40123 477 aa11.22□□□□□ -0.61
MCF2-207ENST00000483690 CCNFP41002 786 aa11.22□□□□□ -0.61
MCF2-207ENST00000483690 MICAL1Q8TDZ2 1067 aa11.22□□□□□ -0.61
MCF2-207ENST00000483690 WFDC12Q8WWY7 111 aa11.22□□□□□ -0.61
MCF2-207ENST00000483690 YIPF2Q9BWQ6 316 aa11.22□□□□□ -0.61
MCF2-207ENST00000483690 GJB6O95452 261 aa11.21□□□□□ -0.61
MCF2-207ENST00000483690 CST3P01034 146 aaPredicted RBP11.21□□□□□ -0.61
MCF2-207ENST00000483690 CANXP27824 592 aaKnown RBP11.21□□□□□ -0.61
MCF2-207ENST00000483690 NOS3P29474 1203 aa11.21□□□□□ -0.61
MCF2-207ENST00000483690 POLR2BP30876 1174 aaKnown RBP11.21□□□□□ -0.61
MCF2-207ENST00000483690 IREB2P48200 963 aaKnown RBP11.21□□□□□ -0.61
MCF2-207ENST00000483690 PRAMEF13Q5VWM6 474 aa11.21□□□□□ -0.61
MCF2-207ENST00000483690 C6orf15Q6UXA7 325 aaPredicted RBP11.21□□□□□ -0.61
MCF2-207ENST00000483690 ALYREFQ86V81 257 aaKnown RBP11.21□□□□□ -0.61
MCF2-207ENST00000483690 CCDC74BQ96LY2 380 aa11.21□□□□□ -0.61
MCF2-207ENST00000483690 KIF2CQ99661 725 aa11.21□□□□□ -0.61
MCF2-207ENST00000483690 FAM221BA6H8Z2 402 aa11.2□□□□□ -0.62
MCF2-207ENST00000483690 PDPK1O15530 556 aa11.2□□□□□ -0.62
MCF2-207ENST00000483690 VHLLQ6RSH7 139 aa11.2□□□□□ -0.62
MCF2-207ENST00000483690 FAM178BQ8IXR5 827 aa11.2□□□□□ -0.62
MCF2-207ENST00000483690 FOXQ1Q9C009 403 aa11.2□□□□□ -0.62
MCF2-207ENST00000483690 ACSS3Q9H6R3 686 aa11.2□□□□□ -0.62
MCF2-207ENST00000483690 TBX22Q9Y458 520 aa11.2□□□□□ -0.62
MCF2-207ENST00000483690 CADPSQ9ULU8 1353 aa11.19□□□□□ -0.62
MCF2-207ENST00000483690 LTBP3Q9NS15 1303 aa11.19□□□□□ -0.62
MCF2-207ENST00000483690 B2RBV5 119 aa11.19□□□□□ -0.62
MCF2-207ENST00000483690 RGS13O14921 159 aa11.19□□□□□ -0.62
MCF2-207ENST00000483690 GBP1P32455 592 aa11.19□□□□□ -0.62
MCF2-207ENST00000483690 IFRD2Q12894 506 aaPredicted RBP11.19□□□□□ -0.62
MCF2-207ENST00000483690 NCAPHQ15003 741 aa11.19□□□□□ -0.62
MCF2-207ENST00000483690 CYB5D2Q8WUJ1 264 aa11.19□□□□□ -0.62
MCF2-207ENST00000483690 FAM46AQ96IP4 442 aaKnown RBP11.19□□□□□ -0.62
MCF2-207ENST00000483690 DHRS1Q96LJ7 313 aa11.19□□□□□ -0.62
MCF2-207ENST00000483690 UBL7Q96S82 380 aaPredicted RBP11.19□□□□□ -0.62
MCF2-207ENST00000483690 STK17AQ9UEE5 414 aa11.19□□□□□ -0.62
MCF2-207ENST00000483690 DAGLAQ9Y4D2 1042 aa11.19□□□□□ -0.62
MCF2-207ENST00000483690 LRIG2O94898 1065 aa11.18□□□□□ -0.62
MCF2-207ENST00000483690 RASGRF1Q13972 1273 aa11.18□□□□□ -0.62
MCF2-207ENST00000483690 ADGRE1Q14246 886 aa11.18□□□□□ -0.62
MCF2-207ENST00000483690 MBTPS1Q14703 1052 aa11.18□□□□□ -0.62
MCF2-207ENST00000483690 UVSSAQ2YD98 709 aa11.18□□□□□ -0.62
MCF2-207ENST00000483690 CDPF1Q6NVV7 123 aa11.18□□□□□ -0.62
MCF2-207ENST00000483690 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.18□□□□□ -0.62
MCF2-207ENST00000483690 ARMCX6Q7L4S7 300 aa11.18□□□□□ -0.62
MCF2-207ENST00000483690 JAZF1Q86VZ6 243 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms