RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 FBXO46Q6PJ61 603 aaPredicted RBP18.88■□□□□ 0.61
CCDC28B-205ENST00000483009 OTOP1Q7RTM1 612 aa18.88■□□□□ 0.61
CCDC28B-205ENST00000483009 PROCA1Q8NCQ7 364 aaPredicted RBP18.88■□□□□ 0.61
CCDC28B-205ENST00000483009 DDRGK1Q96HY6 314 aa18.88■□□□□ 0.61
CCDC28B-205ENST00000483009 STAP2Q9UGK3 403 aa18.88■□□□□ 0.61
CCDC28B-205ENST00000483009 AGTPBP1Q9UPW5 1226 aa18.88■□□□□ 0.61
CCDC28B-205ENST00000483009 SLC4A4Q9Y6R1 1079 aa18.88■□□□□ 0.61
CCDC28B-205ENST00000483009 ADGRA2Q96PE1 1338 aa18.88■□□□□ 0.61
CCDC28B-205ENST00000483009 CCDC85CA6NKD9 419 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 GH2P01242 217 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 IGHDP01880 384 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 CYP2D6P10635 497 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 SHMT1P34896 483 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 PDE1AP54750 535 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 HMGCS2P54868 508 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 CERKLQ49MI3 558 aaPredicted RBP18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 SH3D19Q5HYK7 790 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 C17orf99Q6UX52 265 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 OSBP2Q969R2 916 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 FSD1Q9BTV5 496 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 LNPKQ9C0E8 428 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 EFCC1Q9HA90 598 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 TAOK2Q9UL54 1235 aa18.87■□□□□ 0.61
CCDC28B-205ENST00000483009 CYP2C8P10632 490 aa18.86■□□□□ 0.61
CCDC28B-205ENST00000483009 BACE1P56817 501 aa18.86■□□□□ 0.61
CCDC28B-205ENST00000483009 EVX2Q03828 476 aa18.86■□□□□ 0.61
CCDC28B-205ENST00000483009 ARHGEF6Q15052 776 aa18.86■□□□□ 0.61
CCDC28B-205ENST00000483009 AMOTL1Q8IY63 956 aa18.86■□□□□ 0.61
CCDC28B-205ENST00000483009 STRBPQ96SI9 672 aaKnown RBP18.86■□□□□ 0.61
CCDC28B-205ENST00000483009 CPA4Q9UI42 421 aa18.86■□□□□ 0.61
CCDC28B-205ENST00000483009 HPS5Q9UPZ3 1129 aa18.86■□□□□ 0.61
CCDC28B-205ENST00000483009 DDX60LQ5H9U9 1706 aaKnown RBP18.86■□□□□ 0.61
CCDC28B-205ENST00000483009 MYH1P12882 1939 aa18.85■□□□□ 0.61
CCDC28B-205ENST00000483009 CAP1Q01518 475 aa18.85■□□□□ 0.61
CCDC28B-205ENST00000483009 MTMR2Q13614 643 aa18.85■□□□□ 0.61
CCDC28B-205ENST00000483009 KIF22Q14807 665 aa18.85■□□□□ 0.61
CCDC28B-205ENST00000483009 ABCB5Q2M3G0 1257 aa18.85■□□□□ 0.61
CCDC28B-205ENST00000483009 TREML2Q5T2D2 321 aa18.85■□□□□ 0.61
CCDC28B-205ENST00000483009 B4GALNT3Q6L9W6 998 aa18.85■□□□□ 0.61
CCDC28B-205ENST00000483009 CABP5Q9NP86 173 aa18.85■□□□□ 0.61
CCDC28B-205ENST00000483009 SWAP70Q9UH65 585 aa18.85■□□□□ 0.61
CCDC28B-205ENST00000483009 C19orf81C9J6K1 198 aa18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 USP17L10C9JJH3 530 aa18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 USP17L12C9JPN9 530 aa18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 USP17L21D6R901 530 aa18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 GPAA1O43292 621 aa18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 BCRP11274 1271 aa18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 IRX6P78412 446 aaPredicted RBP18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 LACTBP83111 547 aaPredicted RBP18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 C12orf60Q5U649 245 aa18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 CHD1LQ86WJ1 897 aa18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 TMOD4Q9NZQ9 345 aa18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 PNMA3Q9UL41 463 aa18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 NAV1Q8NEY1 1877 aa18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 PHIPQ8WWQ0 1821 aa18.84■□□□□ 0.61
CCDC28B-205ENST00000483009 M0R2C6 588 aa18.83■□□□□ 0.6
CCDC28B-205ENST00000483009 NUCB1Q02818 461 aa18.83■□□□□ 0.6
CCDC28B-205ENST00000483009 PABPC4Q13310 644 aaKnown RBP eCLIP18.83■□□□□ 0.62e-6■■■■□ 24.7
CCDC28B-205ENST00000483009 GIMAP6Q6P9H5 292 aa18.83■□□□□ 0.6
CCDC28B-205ENST00000483009 SLC44A5Q8NCS7 719 aa18.83■□□□□ 0.6
CCDC28B-205ENST00000483009 SMCR8Q8TEV9 937 aaPredicted RBP18.83■□□□□ 0.6
CCDC28B-205ENST00000483009 EVI5LQ96CN4 794 aa18.83■□□□□ 0.6
CCDC28B-205ENST00000483009 DYNLL2Q96FJ2 89 aa18.83■□□□□ 0.6
CCDC28B-205ENST00000483009 CYP2D7A0A087X1C5 515 aa18.82■□□□□ 0.6
CCDC28B-205ENST00000483009 GSG1L2A8MUP6 293 aa18.82■□□□□ 0.6
CCDC28B-205ENST00000483009 GNAT2P19087 354 aa18.82■□□□□ 0.6
CCDC28B-205ENST00000483009 RAB3GAP1Q15042 981 aa18.82■□□□□ 0.6
CCDC28B-205ENST00000483009 ZMYM1Q5SVZ6 1142 aa18.82■□□□□ 0.6
CCDC28B-205ENST00000483009 CTR9Q6PD62 1173 aa18.82■□□□□ 0.6
CCDC28B-205ENST00000483009 ARHGAP39Q9C0H5 1083 aa18.82■□□□□ 0.6
CCDC28B-205ENST00000483009 ARPP21Q9UBL0 812 aaPredicted RBP18.82■□□□□ 0.6
CCDC28B-205ENST00000483009 PTPN22Q9Y2R2 807 aa18.82■□□□□ 0.6
CCDC28B-205ENST00000483009 MYH7P12883 1935 aa18.82■□□□□ 0.6
CCDC28B-205ENST00000483009 PTPRFP10586 1907 aa18.81■□□□□ 0.6
CCDC28B-205ENST00000483009 OSBPP22059 807 aa18.81■□□□□ 0.6
CCDC28B-205ENST00000483009 GUCY1A2P33402 732 aa18.81■□□□□ 0.6
CCDC28B-205ENST00000483009 FEZ1Q99689 392 aa18.81■□□□□ 0.6
CCDC28B-205ENST00000483009 ATAD5Q96QE3 1844 aa18.8■□□□□ 0.6
CCDC28B-205ENST00000483009 SMIM22K7EJ46 135 aa18.8■□□□□ 0.6
CCDC28B-205ENST00000483009 MPHOSPH10O00566 681 aaKnown RBP18.8■□□□□ 0.6
CCDC28B-205ENST00000483009 GNRH1P01148 92 aa18.8■□□□□ 0.6
CCDC28B-205ENST00000483009 CDK8P49336 464 aa18.8■□□□□ 0.6
CCDC28B-205ENST00000483009 SEPT2Q15019 361 aa18.8■□□□□ 0.6
CCDC28B-205ENST00000483009 SBK1Q52WX2 424 aa18.8■□□□□ 0.6
CCDC28B-205ENST00000483009 USP17L2Q6R6M4 530 aa18.8■□□□□ 0.6
CCDC28B-205ENST00000483009 C16orf86Q6ZW13 317 aa18.8■□□□□ 0.6
CCDC28B-205ENST00000483009 SEC62Q99442 399 aaKnown RBP18.8■□□□□ 0.6
CCDC28B-205ENST00000483009 ASCC2Q9H1I8 757 aaPredicted RBP18.8■□□□□ 0.6
CCDC28B-205ENST00000483009 HOXA7P31268 230 aaPredicted RBP18.79■□□□□ 0.6
CCDC28B-205ENST00000483009 PSMC4P43686 418 aa18.79■□□□□ 0.6
CCDC28B-205ENST00000483009 USP14P54578 494 aa18.79■□□□□ 0.6
CCDC28B-205ENST00000483009 IRX3P78415 501 aaPredicted RBP18.79■□□□□ 0.6
CCDC28B-205ENST00000483009 TMEM179Q6ZVK1 233 aa18.79■□□□□ 0.6
CCDC28B-205ENST00000483009 PLEKHM2Q8IWE5 1019 aa18.79■□□□□ 0.6
CCDC28B-205ENST00000483009 ACER1Q8TDN7 264 aa18.79■□□□□ 0.6
CCDC28B-205ENST00000483009 C12orf42Q96LP6 360 aa18.79■□□□□ 0.6
CCDC28B-205ENST00000483009 CCDC17Q96LX7 622 aa18.79■□□□□ 0.6
CCDC28B-205ENST00000483009 KIAA1683Q9H0B3 1180 aa18.79■□□□□ 0.6
CCDC28B-205ENST00000483009 EPB41L4AQ9HCS5 686 aaPredicted RBP18.79■□□□□ 0.6
CCDC28B-205ENST00000483009 EMILIN3Q9NT22 766 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms