RNA–Protein interactions for RNA: ENST00000482590.1

CLK1-212, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 626 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-212ENST00000482590 RRBP1Q9P2E9 1410 aaKnown RBP9.34□□□□□ -0.91
CLK1-212ENST00000482590 FOSL1P15407 271 aa9.34□□□□□ -0.91
CLK1-212ENST00000482590 YBX3P16989 372 aaKnown RBP eCLIP9.34□□□□□ -0.91
CLK1-212ENST00000482590 ATF3P18847 181 aa9.34□□□□□ -0.91
CLK1-212ENST00000482590 EHHADHQ08426 723 aa9.34□□□□□ -0.91
CLK1-212ENST00000482590 AAMPQ13685 434 aa9.34□□□□□ -0.91
CLK1-212ENST00000482590 NFKBIBQ15653 356 aa9.34□□□□□ -0.91
CLK1-212ENST00000482590 ZNF326Q5BKZ1 582 aaKnown RBP9.34□□□□□ -0.91
CLK1-212ENST00000482590 ABI1Q8IZP0 508 aa9.34□□□□□ -0.91
CLK1-212ENST00000482590 C2CD4AQ8NCU7 369 aaPredicted RBP9.34□□□□□ -0.91
CLK1-212ENST00000482590 FBLIM1Q8WUP2 373 aa9.34□□□□□ -0.91
CLK1-212ENST00000482590 OSBPL1AQ9BXW6 950 aa9.34□□□□□ -0.91
CLK1-212ENST00000482590 RGS17Q9UGC6 210 aaPredicted RBP9.34□□□□□ -0.91
CLK1-212ENST00000482590 IFT172Q9UG01 1749 aa9.34□□□□□ -0.92
CLK1-212ENST00000482590 PTPRUQ92729 1446 aa9.33□□□□□ -0.92
CLK1-212ENST00000482590 METTL12A8MUP2 240 aa9.33□□□□□ -0.92
CLK1-212ENST00000482590 FZD6O60353 706 aa9.33□□□□□ -0.92
CLK1-212ENST00000482590 USP11P51784 963 aa9.33□□□□□ -0.92
CLK1-212ENST00000482590 GSTM4Q03013 218 aa9.33□□□□□ -0.92
CLK1-212ENST00000482590 CPSF6Q16630 551 aaKnown RBP eCLIP9.33□□□□□ -0.92
CLK1-212ENST00000482590 PAOXQ6QHF9 649 aa9.33□□□□□ -0.92
CLK1-212ENST00000482590 NRSN2Q9GZP1 204 aa9.33□□□□□ -0.92
CLK1-212ENST00000482590 SPATA31A6Q5VVP1 1343 aa9.32□□□□□ -0.92
CLK1-212ENST00000482590 ADMP35318 185 aa9.32□□□□□ -0.92
CLK1-212ENST00000482590 USP5P45974 858 aa9.32□□□□□ -0.92
CLK1-212ENST00000482590 MEX3CQ5U5Q3 659 aaKnown RBP9.32□□□□□ -0.92
CLK1-212ENST00000482590 NFXL1Q6ZNB6 911 aa9.32□□□□□ -0.92
CLK1-212ENST00000482590 CCDC39Q9UFE4 941 aa9.32□□□□□ -0.92
CLK1-212ENST00000482590 ANGEL1Q9UNK9 670 aaKnown RBP9.32□□□□□ -0.92
CLK1-212ENST00000482590 ADGRL3Q9HAR2 1447 aa9.31□□□□□ -0.92
CLK1-212ENST00000482590 MARF1Q9Y4F3 1742 aaKnown RBP9.31□□□□□ -0.92
CLK1-212ENST00000482590 FAM13AO94988 1023 aa9.31□□□□□ -0.92
CLK1-212ENST00000482590 SOX4Q06945 474 aaPredicted RBP9.31□□□□□ -0.92
CLK1-212ENST00000482590 C19orf44Q9H6X5 657 aa9.31□□□□□ -0.92
CLK1-212ENST00000482590 ZFYVE28Q9HCC9 887 aa9.31□□□□□ -0.92
CLK1-212ENST00000482590 KNDC1Q76NI1 1749 aa9.31□□□□□ -0.92
CLK1-212ENST00000482590 MST1RQ04912 1400 aa9.31□□□□□ -0.92
CLK1-212ENST00000482590 NAIPQ13075 1403 aa9.31□□□□□ -0.92
CLK1-212ENST00000482590 BRD1O95696 1058 aa9.3□□□□□ -0.92
CLK1-212ENST00000482590 PRNPP04156 253 aa9.3□□□□□ -0.92
CLK1-212ENST00000482590 GJD3Q8N144 294 aa9.3□□□□□ -0.92
CLK1-212ENST00000482590 EZH1Q92800 747 aaPredicted RBP9.3□□□□□ -0.92
CLK1-212ENST00000482590 CCDC87Q9NVE4 849 aa9.3□□□□□ -0.92
CLK1-212ENST00000482590 PRKAG2Q9UGJ0 569 aa9.3□□□□□ -0.92
CLK1-212ENST00000482590 LAMC1P11047 1609 aa9.3□□□□□ -0.92
CLK1-212ENST00000482590 POLR3DP05423 398 aaPredicted RBP9.29□□□□□ -0.92
CLK1-212ENST00000482590 PHLDB3Q6NSJ2 640 aa9.29□□□□□ -0.92
CLK1-212ENST00000482590 ZAR1Q86SH2 424 aa9.29□□□□□ -0.92
CLK1-212ENST00000482590 TBC1D32Q96NH3 1257 aa9.29□□□□□ -0.92
CLK1-212ENST00000482590 METTL22Q9BUU2 404 aaPredicted RBP9.29□□□□□ -0.92
CLK1-212ENST00000482590 PTCH1Q13635 1447 aa9.29□□□□□ -0.92
CLK1-212ENST00000482590 ADH5P11766 374 aa9.28□□□□□ -0.92
CLK1-212ENST00000482590 GATA6Q92908 595 aa9.28□□□□□ -0.92
CLK1-212ENST00000482590 IGSF5Q9NSI5 407 aa9.28□□□□□ -0.92
CLK1-212ENST00000482590 HFM1A2PYH4 1435 aa9.28□□□□□ -0.92
CLK1-212ENST00000482590 METP08581 1390 aa9.27□□□□□ -0.93
CLK1-212ENST00000482590 CYP26A1O43174 497 aa9.27□□□□□ -0.93
CLK1-212ENST00000482590 CTSBP07858 339 aa9.27□□□□□ -0.93
CLK1-212ENST00000482590 FKBP4Q02790 459 aaKnown RBP eCLIP9.27□□□□□ -0.93
CLK1-212ENST00000482590 ZNF423Q2M1K9 1284 aa9.27□□□□□ -0.93
CLK1-212ENST00000482590 CCDC27Q2M243 656 aa9.27□□□□□ -0.93
CLK1-212ENST00000482590 ZNF772Q68DY9 489 aaPredicted RBP9.27□□□□□ -0.93
CLK1-212ENST00000482590 BRINP3Q76B58 766 aa9.27□□□□□ -0.93
CLK1-212ENST00000482590 SETD5Q9C0A6 1442 aa9.27□□□□□ -0.93
CLK1-212ENST00000482590 CDC42BPGQ6DT37 1551 aa9.27□□□□□ -0.93
CLK1-212ENST00000482590 A0A096LPE4 126 aa9.26□□□□□ -0.93
CLK1-212ENST00000482590 A0A1W2PP55 124 aa9.26□□□□□ -0.93
CLK1-212ENST00000482590 A0A1W2PPZ6 126 aa9.26□□□□□ -0.93
CLK1-212ENST00000482590 FAM170BA6NMN3 283 aa9.26□□□□□ -0.93
CLK1-212ENST00000482590 EIF4EBP3O60516 100 aaPredicted RBP9.26□□□□□ -0.93
CLK1-212ENST00000482590 MAOBP27338 520 aa9.26□□□□□ -0.93
CLK1-212ENST00000482590 PCDH1Q08174 1060 aa9.26□□□□□ -0.93
CLK1-212ENST00000482590 SF3B2Q13435 895 aaKnown RBP9.26□□□□□ -0.93
CLK1-212ENST00000482590 CBLL1Q75N03 491 aa9.26□□□□□ -0.93
CLK1-212ENST00000482590 VSIG10LQ86VR7 867 aa9.26□□□□□ -0.93
CLK1-212ENST00000482590 CCNJLQ8IV13 435 aa9.26□□□□□ -0.93
CLK1-212ENST00000482590 YIPF2Q9BWQ6 316 aa9.26□□□□□ -0.93
CLK1-212ENST00000482590 ACTL7BQ9Y614 415 aa9.26□□□□□ -0.93
CLK1-212ENST00000482590 COL22A1Q8NFW1 1626 aaPredicted RBP9.26□□□□□ -0.93
CLK1-212ENST00000482590 GRIA4P48058 902 aa9.25□□□□□ -0.93
CLK1-212ENST00000482590 COL19A1Q14993 1142 aa9.25□□□□□ -0.93
CLK1-212ENST00000482590 SPRED3Q2MJR0 410 aa9.25□□□□□ -0.93
CLK1-212ENST00000482590 FBXL18Q96ME1 805 aa9.25□□□□□ -0.93
CLK1-212ENST00000482590 TCF12Q99081 682 aa9.25□□□□□ -0.93
CLK1-212ENST00000482590 CLEC4MQ9H2X3 399 aaPredicted RBP9.25□□□□□ -0.93
CLK1-212ENST00000482590 ANO2Q9NQ90 1003 aa9.25□□□□□ -0.93
CLK1-212ENST00000482590 BSDC1Q9NW68 430 aaPredicted RBP9.25□□□□□ -0.93
CLK1-212ENST00000482590 CDK12Q9NYV4 1490 aaPredicted RBP9.25□□□□□ -0.93
CLK1-212ENST00000482590 KIF1AQ12756 1690 aa9.25□□□□□ -0.93
CLK1-212ENST00000482590 FMN2Q9NZ56 1722 aa9.25□□□□□ -0.93
CLK1-212ENST00000482590 RGPD8O14715 1765 aaPredicted RBP9.24□□□□□ -0.93
CLK1-212ENST00000482590 PRAG1Q86YV5 1406 aa9.24□□□□□ -0.93
CLK1-212ENST00000482590 C1orf167Q5SNV9 1468 aa9.24□□□□□ -0.93
CLK1-212ENST00000482590 NFICP08651 508 aa9.24□□□□□ -0.93
CLK1-212ENST00000482590 ZNF211Q13398 564 aaPredicted RBP9.24□□□□□ -0.93
CLK1-212ENST00000482590 CARNS1A5YM72 827 aa9.23□□□□□ -0.93
CLK1-212ENST00000482590 ABL1P00519 1130 aa9.23□□□□□ -0.93
CLK1-212ENST00000482590 CYP11A1P05108 521 aa9.23□□□□□ -0.93
CLK1-212ENST00000482590 CANXP27824 592 aaKnown RBP9.23□□□□□ -0.93
CLK1-212ENST00000482590 POU4F3Q15319 338 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms