RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 LCORLQ8N3X6 602 aa18.05■□□□□ 0.48
LIMS3-204ENST00000482065 WDR18Q9BV38 432 aa18.05■□□□□ 0.48
LIMS3-204ENST00000482065 SRRDQ9UH36 339 aa18.05■□□□□ 0.48
LIMS3-204ENST00000482065 MGAMO43451 1857 aa18.05■□□□□ 0.48
LIMS3-204ENST00000482065 PDE4DIPQ5VU43 2346 aa18.04■□□□□ 0.48
LIMS3-204ENST00000482065 CHGBP05060 677 aa18.04■□□□□ 0.48
LIMS3-204ENST00000482065 PLCD1P51178 756 aa18.04■□□□□ 0.48
LIMS3-204ENST00000482065 RRP1P56182 461 aaKnown RBP18.04■□□□□ 0.48
LIMS3-204ENST00000482065 EVX2Q03828 476 aa18.04■□□□□ 0.48
LIMS3-204ENST00000482065 SH3D19Q5HYK7 790 aa18.04■□□□□ 0.48
LIMS3-204ENST00000482065 SDR42E1Q8WUS8 393 aa18.04■□□□□ 0.48
LIMS3-204ENST00000482065 CRNKL1Q9BZJ0 848 aaKnown RBP18.04■□□□□ 0.48
LIMS3-204ENST00000482065 DCTPP1Q9H773 170 aa18.04■□□□□ 0.48
LIMS3-204ENST00000482065 SERPINB13Q9UIV8 391 aa18.04■□□□□ 0.48
LIMS3-204ENST00000482065 MYPNQ86TC9 1320 aa18.03■□□□□ 0.48
LIMS3-204ENST00000482065 GH2P01242 217 aa18.03■□□□□ 0.48
LIMS3-204ENST00000482065 ADD2P35612 726 aa18.03■□□□□ 0.48
LIMS3-204ENST00000482065 PRMT2P55345 433 aa18.03■□□□□ 0.48
LIMS3-204ENST00000482065 FCGRTP55899 365 aa18.03■□□□□ 0.48
LIMS3-204ENST00000482065 BACE1P56817 501 aa18.03■□□□□ 0.48
LIMS3-204ENST00000482065 NBPF11Q86T75 865 aa18.03■□□□□ 0.48
LIMS3-204ENST00000482065 TTC6Q86TZ1 520 aa18.03■□□□□ 0.48
LIMS3-204ENST00000482065 ANKRD13CQ8N6S4 541 aa18.03■□□□□ 0.48
LIMS3-204ENST00000482065 EHD4Q9H223 541 aa18.03■□□□□ 0.48
LIMS3-204ENST00000482065 ARMT1Q9H993 441 aa18.03■□□□□ 0.48
LIMS3-204ENST00000482065 PNMA3Q9UL41 463 aa18.03■□□□□ 0.48
LIMS3-204ENST00000482065 PCDHB15Q9Y5E8 787 aa18.03■□□□□ 0.48
LIMS3-204ENST00000482065 RBBP6Q7Z6E9 1792 aaKnown RBP18.03■□□□□ 0.48
LIMS3-204ENST00000482065 MKI67P46013 3256 aaKnown RBP18.03■□□□□ 0.48
LIMS3-204ENST00000482065 POLR3DP05423 398 aaPredicted RBP18.02■□□□□ 0.48
LIMS3-204ENST00000482065 EN2P19622 333 aaPredicted RBP18.02■□□□□ 0.48
LIMS3-204ENST00000482065 HOXD10P28358 340 aa18.02■□□□□ 0.48
LIMS3-204ENST00000482065 PRKCZQ05513 592 aa18.02■□□□□ 0.48
LIMS3-204ENST00000482065 TATDN1Q6P1N9 297 aa18.02■□□□□ 0.48
LIMS3-204ENST00000482065 RAET1EQ8TD07 263 aa18.02■□□□□ 0.48
LIMS3-204ENST00000482065 ASCC2Q9H1I8 757 aaPredicted RBP18.02■□□□□ 0.48
LIMS3-204ENST00000482065 GINM1Q9NU53 330 aa18.02■□□□□ 0.48
LIMS3-204ENST00000482065 MYH7P12883 1935 aa18.02■□□□□ 0.47
LIMS3-204ENST00000482065 MBD4O95243 580 aa18.01■□□□□ 0.47
LIMS3-204ENST00000482065 PABPC4Q13310 644 aaKnown RBP eCLIP18.01■□□□□ 0.47
LIMS3-204ENST00000482065 TSHZ3Q63HK5 1081 aa18.01■□□□□ 0.47
LIMS3-204ENST00000482065 TMEM106CQ9BVX2 250 aa18.01■□□□□ 0.47
LIMS3-204ENST00000482065 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.01■□□□□ 0.47
LIMS3-204ENST00000482065 DCP1AQ9NPI6 582 aaPredicted RBP18.01■□□□□ 0.47
LIMS3-204ENST00000482065 ECHDC1Q9NTX5 307 aa18.01■□□□□ 0.47
LIMS3-204ENST00000482065 MCM9Q9NXL9 1143 aa18.01■□□□□ 0.47
LIMS3-204ENST00000482065 TMOD4Q9NZQ9 345 aa18.01■□□□□ 0.47
LIMS3-204ENST00000482065 GABRQQ9UN88 632 aa18.01■□□□□ 0.47
LIMS3-204ENST00000482065 USP17L10C9JJH3 530 aa18■□□□□ 0.47
LIMS3-204ENST00000482065 PRKAB2O43741 272 aa18■□□□□ 0.47
LIMS3-204ENST00000482065 CYP2D6P10635 497 aa18■□□□□ 0.47
LIMS3-204ENST00000482065 SHMT1P34896 483 aa18■□□□□ 0.47
LIMS3-204ENST00000482065 CERKLQ49MI3 558 aaPredicted RBP18■□□□□ 0.47
LIMS3-204ENST00000482065 C19orf81C9J6K1 198 aa17.99■□□□□ 0.47
LIMS3-204ENST00000482065 TNPO2O14787 897 aaKnown RBP17.99■□□□□ 0.47
LIMS3-204ENST00000482065 GABPAQ06546 454 aa17.99■□□□□ 0.47
LIMS3-204ENST00000482065 RAB3GAP1Q15042 981 aa17.99■□□□□ 0.47
LIMS3-204ENST00000482065 FAM110CQ1W6H9 321 aa17.99■□□□□ 0.47
LIMS3-204ENST00000482065 ABCB5Q2M3G0 1257 aa17.99■□□□□ 0.47
LIMS3-204ENST00000482065 CRBNQ96SW2 442 aa17.99■□□□□ 0.47
LIMS3-204ENST00000482065 DOCK3Q8IZD9 2030 aa17.98■□□□□ 0.47
LIMS3-204ENST00000482065 GRK4P32298 578 aa17.98■□□□□ 0.47
LIMS3-204ENST00000482065 GCLCP48506 637 aaPredicted RBP17.98■□□□□ 0.47
LIMS3-204ENST00000482065 IRX3P78415 501 aaPredicted RBP17.98■□□□□ 0.47
LIMS3-204ENST00000482065 UBE3CQ15386 1083 aa17.98■□□□□ 0.47
LIMS3-204ENST00000482065 MTFR1Q15390 333 aa17.98■□□□□ 0.47
LIMS3-204ENST00000482065 ZYXQ15942 572 aaKnown RBP17.98■□□□□ 0.47
LIMS3-204ENST00000482065 SLC44A5Q8NCS7 719 aa17.98■□□□□ 0.47
LIMS3-204ENST00000482065 EMILIN3Q9NT22 766 aa17.98■□□□□ 0.47
LIMS3-204ENST00000482065 BAZ2AQ9UIF9 1905 aaKnown RBP17.98■□□□□ 0.47
LIMS3-204ENST00000482065 PEX10O60683 326 aa17.97■□□□□ 0.47
LIMS3-204ENST00000482065 HOXA7P31268 230 aaPredicted RBP17.97■□□□□ 0.47
LIMS3-204ENST00000482065 FLT3LGP49771 235 aa17.97■□□□□ 0.47
LIMS3-204ENST00000482065 USP17L2Q6R6M4 530 aa17.97■□□□□ 0.47
LIMS3-204ENST00000482065 ACER1Q8TDN7 264 aa17.97■□□□□ 0.47
LIMS3-204ENST00000482065 P2RX7Q99572 595 aaKnown RBP17.97■□□□□ 0.47
LIMS3-204ENST00000482065 FEZ1Q99689 392 aa17.97■□□□□ 0.47
LIMS3-204ENST00000482065 PUS7LQ9H0K6 701 aaKnown RBP17.97■□□□□ 0.47
LIMS3-204ENST00000482065 SMIM22K7EJ46 135 aa17.96■□□□□ 0.47
LIMS3-204ENST00000482065 GUCY1A2P33402 732 aa17.96■□□□□ 0.47
LIMS3-204ENST00000482065 DYNLL2Q96FJ2 89 aa17.96■□□□□ 0.47
LIMS3-204ENST00000482065 GPATCH3Q96I76 525 aa17.96■□□□□ 0.47
LIMS3-204ENST00000482065 CABP5Q9NP86 173 aa17.96■□□□□ 0.47
LIMS3-204ENST00000482065 ATP8A2Q9NTI2 1148 aa17.96■□□□□ 0.47
LIMS3-204ENST00000482065 CYP2D7A0A087X1C5 515 aa17.95■□□□□ 0.46
LIMS3-204ENST00000482065 HERVK_113P62684 666 aa17.95■□□□□ 0.46
LIMS3-204ENST00000482065 SEPT2Q15019 361 aa17.95■□□□□ 0.46
LIMS3-204ENST00000482065 ZSCAN25Q6NSZ9 544 aa17.95■□□□□ 0.46
LIMS3-204ENST00000482065 SLAIN1Q8ND83 568 aa17.95■□□□□ 0.46
LIMS3-204ENST00000482065 OTUD7AQ8TE49 926 aaPredicted RBP17.95■□□□□ 0.46
LIMS3-204ENST00000482065 TXNRD2Q9NNW7 524 aa17.95■□□□□ 0.46
LIMS3-204ENST00000482065 BIN2Q9UBW5 565 aaPredicted RBP17.95■□□□□ 0.46
LIMS3-204ENST00000482065 TAOK2Q9UL54 1235 aa17.95■□□□□ 0.46
LIMS3-204ENST00000482065 SLC4A4Q9Y6R1 1079 aa17.95■□□□□ 0.46
LIMS3-204ENST00000482065 MPHOSPH10O00566 681 aaKnown RBP17.94■□□□□ 0.46
LIMS3-204ENST00000482065 ADCY3O60266 1144 aa17.94■□□□□ 0.46
LIMS3-204ENST00000482065 ELNP15502 786 aa17.94■□□□□ 0.46
LIMS3-204ENST00000482065 KBTBD3Q8NAB2 608 aa17.94■□□□□ 0.46
LIMS3-204ENST00000482065 COA7Q96BR5 231 aa17.94■□□□□ 0.46
LIMS3-204ENST00000482065 C12orf42Q96LP6 360 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms