RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 LEMD3Q9Y2U8 911 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 TPM3P06753 285 aa12.73□□□□□ -0.37
HLA-DMB-260ENST00000477537 CYP2D6P10635 497 aa12.73□□□□□ -0.37
HLA-DMB-260ENST00000477537 MAPK8IP2Q13387 824 aaPredicted RBP12.73□□□□□ -0.37
HLA-DMB-260ENST00000477537 PRR5LQ6MZQ0 368 aa12.73□□□□□ -0.37
HLA-DMB-260ENST00000477537 CATIPQ7Z7H3 387 aa12.73□□□□□ -0.37
HLA-DMB-260ENST00000477537 PLA2G4DQ86XP0 818 aa12.73□□□□□ -0.37
HLA-DMB-260ENST00000477537 DIS3L2Q8IYB7 885 aaKnown RBP12.73□□□□□ -0.37
HLA-DMB-260ENST00000477537 FBXW7Q969H0 707 aa12.73□□□□□ -0.37
HLA-DMB-260ENST00000477537 XDHP47989 1333 aa12.73□□□□□ -0.37
HLA-DMB-260ENST00000477537 ORC4O43929 436 aa12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 SLC3A2P08195 630 aaKnown RBP12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 AKAP17AQ02040 695 aaKnown RBP12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 PPP2R5BQ15173 497 aa12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 TMED8Q6PL24 325 aaPredicted RBP12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 CEP57L1Q8IYX8 460 aa12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 RPGRQ92834 1020 aaKnown RBP12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 KIAA1468Q9P260 1216 aa12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 KIAA1551Q9HCM1 1747 aa12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 BECN2A8MW95 431 aa12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 ZBTB22O15209 634 aa12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 SYKP43405 635 aa12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 ZRSR1Q15695 479 aaKnown RBP12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 SHC4Q6S5L8 630 aa12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 DHX40Q8IX18 779 aaKnown RBP12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 DRC7Q8IY82 874 aa12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 WDR66Q8TBY9 1149 aa12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 CLIC6Q96NY7 704 aa12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 GPR101Q96P66 508 aaPredicted RBP12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 RNF26Q9BY78 433 aaPredicted RBP12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 FOXP1Q9H334 677 aaPredicted RBP12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 KCNF1Q9H3M0 494 aa12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 ARPP21Q9UBL0 812 aaPredicted RBP12.72□□□□□ -0.37
HLA-DMB-260ENST00000477537 CUTAO60888 179 aa12.71□□□□□ -0.37
HLA-DMB-260ENST00000477537 LDHBP07195 334 aaKnown RBP12.71□□□□□ -0.37
HLA-DMB-260ENST00000477537 ST5P78524 1137 aa12.71□□□□□ -0.37
HLA-DMB-260ENST00000477537 GPSM2P81274 684 aa12.71□□□□□ -0.37
HLA-DMB-260ENST00000477537 SBK1Q52WX2 424 aa12.71□□□□□ -0.37
HLA-DMB-260ENST00000477537 FAM47AQ5JRC9 791 aa12.71□□□□□ -0.37
HLA-DMB-260ENST00000477537 RESP18Q5W5W9 173 aa12.71□□□□□ -0.37
HLA-DMB-260ENST00000477537 ZNF804AQ7Z570 1209 aa12.71□□□□□ -0.37
HLA-DMB-260ENST00000477537 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.71□□□□□ -0.37
HLA-DMB-260ENST00000477537 PIBF1Q8WXW3 757 aa12.71□□□□□ -0.37
HLA-DMB-260ENST00000477537 AKT1S1Q96B36 256 aa12.71□□□□□ -0.37
HLA-DMB-260ENST00000477537 NAT10Q9H0A0 1025 aaKnown RBP12.71□□□□□ -0.37
HLA-DMB-260ENST00000477537 RBM28Q9NW13 759 aaKnown RBP12.71□□□□□ -0.37
HLA-DMB-260ENST00000477537 NMT2O60551 498 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 DDAH1O94760 285 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 PLEKHA8P1O95397 391 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 CALM1P0DP23 149 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 CALM2P0DP24 149 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 CALM3P0DP25 149 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 GYS1P13807 737 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 PTGS1P23219 599 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 TOB1P50616 345 aaPredicted RBP12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 NR5A1Q13285 461 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 C17orf53Q8N3J3 647 aaPredicted RBP12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 AOPEPQ8N6M6 819 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 OXER1Q8TDS5 423 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 TIGD1Q96MW7 591 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 MCM9Q9NXL9 1143 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 HPSEQ9Y251 543 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 R3HCC1Q9Y3T6 440 aaKnown RBP12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 PRPF3O43395 683 aaKnown RBP12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 SERPINB2P05120 415 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 USP17L8P0C7I0 530 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 PRKCSHP14314 528 aaPredicted RBP12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 PDE4BQ07343 736 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 FUT2Q10981 343 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 TROAPQ12815 778 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 NOLC1Q14978 699 aaKnown RBP eCLIP12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 SLC4A8Q2Y0W8 1093 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 RILPL1Q5EBL4 403 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 SARM1Q6SZW1 724 aa12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 KRI1Q8N9T8 703 aaKnown RBP12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 RBM17Q96I25 401 aaKnown RBP12.7□□□□□ -0.38
HLA-DMB-260ENST00000477537 FAM237AA0A1B0GTK4 181 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 hCG_1642624A0A1W2PR95 340 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 BIN1O00499 593 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 UFL1O94874 794 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 XBP1P17861 261 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 CDC25BP30305 580 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 USP5P45974 858 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 NLRP12P59046 1061 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 GSTO1P78417 241 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 GRIK5Q16478 980 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 PKN1Q16512 942 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 DPCR1Q3MIW9 517 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 C15orf52Q6ZUT6 534 aaKnown RBP12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 CCDC186Q7Z3E2 898 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 SH3RF3Q8TEJ3 882 aaPredicted RBP12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 SHISA4Q96DD7 197 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 PDGFDQ9GZP0 370 aaPredicted RBP12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 VPS54Q9P1Q0 977 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 CLIP2Q9UDT6 1046 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 V9GY48 417 aaPredicted RBP12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 UTRNP46939 3433 aa12.69□□□□□ -0.38
HLA-DMB-260ENST00000477537 TSPY2A6NKD2 308 aa12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 DIXDC1Q155Q3 683 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms