RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 NID2Q14112 1375 aa16.92■□□□□ 0.3
COL4A6-206ENST00000477085 ECM29Q5VYK3 1845 aa16.92■□□□□ 0.3
COL4A6-206ENST00000477085 ARFGEF1Q9Y6D6 1849 aa16.92■□□□□ 0.3
COL4A6-206ENST00000477085 DDTLA6NHG4 134 aaPredicted RBP16.92■□□□□ 0.3
COL4A6-206ENST00000477085 ZNF654Q8IZM8 581 aa16.92■□□□□ 0.3
COL4A6-206ENST00000477085 GOLGA8AA7E2F4 631 aa16.91■□□□□ 0.3
COL4A6-206ENST00000477085 FZD9O00144 591 aa16.91■□□□□ 0.3
COL4A6-206ENST00000477085 IFIT1BQ5T764 474 aaKnown RBP16.91■□□□□ 0.3
COL4A6-206ENST00000477085 CDC37L1Q7L3B6 337 aa16.91■□□□□ 0.3
COL4A6-206ENST00000477085 TTC6Q86TZ1 520 aa16.91■□□□□ 0.3
COL4A6-206ENST00000477085 ZNF444Q8N0Y2 327 aaPredicted RBP16.91■□□□□ 0.3
COL4A6-206ENST00000477085 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.91■□□□□ 0.3
COL4A6-206ENST00000477085 NPM3O75607 178 aaKnown RBP16.9■□□□□ 0.3
COL4A6-206ENST00000477085 TROAPQ12815 778 aa16.9■□□□□ 0.3
COL4A6-206ENST00000477085 SYT17Q9BSW7 474 aa16.9■□□□□ 0.3
COL4A6-206ENST00000477085 TCP11L1Q9NUJ3 509 aa16.9■□□□□ 0.3
COL4A6-206ENST00000477085 VPS37CA5D8V6 355 aaPredicted RBP16.89■□□□□ 0.3
COL4A6-206ENST00000477085 UBE2Q2LH0YL09 131 aa16.89■□□□□ 0.3
COL4A6-206ENST00000477085 DHX16O60231 1041 aaKnown RBP16.89■□□□□ 0.3
COL4A6-206ENST00000477085 F13A1P00488 732 aa16.89■□□□□ 0.3
COL4A6-206ENST00000477085 HMGN5P82970 282 aaKnown RBP16.89■□□□□ 0.3
COL4A6-206ENST00000477085 FOXD4L6Q3SYB3 417 aaPredicted RBP16.89■□□□□ 0.3
COL4A6-206ENST00000477085 FOXD4L3Q6VB84 417 aaPredicted RBP16.89■□□□□ 0.3
COL4A6-206ENST00000477085 OGFOD1Q8N543 542 aa16.89■□□□□ 0.3
COL4A6-206ENST00000477085 FANCBQ8NB91 859 aa16.89■□□□□ 0.3
COL4A6-206ENST00000477085 ANKS1AQ92625 1134 aa16.89■□□□□ 0.3
COL4A6-206ENST00000477085 PHKBQ93100 1093 aa16.89■□□□□ 0.3
COL4A6-206ENST00000477085 ZBED3Q96IU2 234 aaPredicted RBP16.89■□□□□ 0.3
COL4A6-206ENST00000477085 GBP4Q96PP9 640 aa16.89■□□□□ 0.3
COL4A6-206ENST00000477085 DNAJC18Q9H819 358 aa16.89■□□□□ 0.3
COL4A6-206ENST00000477085 CLRN2A0PK11 232 aa16.89■□□□□ 0.29
COL4A6-206ENST00000477085 TSPY3P0CV98 308 aa16.89■□□□□ 0.29
COL4A6-206ENST00000477085 TSPY8P0CW00 308 aa16.89■□□□□ 0.29
COL4A6-206ENST00000477085 PDCP20941 246 aa16.89■□□□□ 0.29
COL4A6-206ENST00000477085 SHMT1P34896 483 aa16.89■□□□□ 0.29
COL4A6-206ENST00000477085 DLGAP5Q15398 846 aa16.89■□□□□ 0.29
COL4A6-206ENST00000477085 SYNE3Q6ZMZ3 975 aa16.89■□□□□ 0.29
COL4A6-206ENST00000477085 CMTR1Q8N1G2 835 aaKnown RBP16.89■□□□□ 0.29
COL4A6-206ENST00000477085 MTMR14Q8NCE2 650 aa16.89■□□□□ 0.29
COL4A6-206ENST00000477085 NUP133Q8WUM0 1156 aa16.89■□□□□ 0.29
COL4A6-206ENST00000477085 SERPINB13Q9UIV8 391 aa16.89■□□□□ 0.29
COL4A6-206ENST00000477085 HDAC9Q9UKV0 1011 aa16.89■□□□□ 0.29
COL4A6-206ENST00000477085 CPLX1O14810 134 aa16.88■□□□□ 0.29
COL4A6-206ENST00000477085 EGFRP00533 1210 aa16.88■□□□□ 0.29
COL4A6-206ENST00000477085 NT5C2P49902 561 aa16.88■□□□□ 0.29
COL4A6-206ENST00000477085 FOSBP53539 338 aa16.88■□□□□ 0.29
COL4A6-206ENST00000477085 RCAN1P53805 252 aa16.88■□□□□ 0.29
COL4A6-206ENST00000477085 TNIP1Q15025 636 aa16.88■□□□□ 0.29
COL4A6-206ENST00000477085 ARHGAP27Q6ZUM4 889 aa16.88■□□□□ 0.29
COL4A6-206ENST00000477085 NBPF11Q86T75 865 aa16.88■□□□□ 0.29
COL4A6-206ENST00000477085 DGKHQ86XP1 1220 aa16.88■□□□□ 0.29
COL4A6-206ENST00000477085 FAM184AQ8NB25 1140 aa16.88■□□□□ 0.29
COL4A6-206ENST00000477085 NEDD1Q8NHV4 660 aa16.88■□□□□ 0.29
COL4A6-206ENST00000477085 CHMP4CQ96CF2 233 aa16.88■□□□□ 0.29
COL4A6-206ENST00000477085 GJB4Q9NTQ9 266 aa16.88■□□□□ 0.29
COL4A6-206ENST00000477085 ORC3Q9UBD5 711 aaPredicted RBP16.88■□□□□ 0.29
COL4A6-206ENST00000477085 ZNF70Q9UC06 446 aaPredicted RBP16.88■□□□□ 0.29
COL4A6-206ENST00000477085 RTN1Q16799 776 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 MCTP1Q6DN14 999 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 AIFM3Q96NN9 605 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 EHD4Q9H223 541 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 ZNF287Q9HBT7 754 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 ZNF541Q9H0D2 1346 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 SIPA1L1O43166 1804 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 FAM196BA6NMK8 535 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 ENTPD3O75355 529 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 AKR1B1P15121 316 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 NOVP48745 357 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 ZNF280AP59817 542 aaPredicted RBP16.87■□□□□ 0.29
COL4A6-206ENST00000477085 NBPF9Q3BBW0 867 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 SPDYE2Q495Y8 402 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 CATIPQ7Z7H3 387 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 FERMT3Q86UX7 667 aa16.87■□□□□ 0.29
COL4A6-206ENST00000477085 DHX36Q9H2U1 1008 aaKnown RBP16.87■□□□□ 0.29
COL4A6-206ENST00000477085 CNTNAP1P78357 1384 aa16.86■□□□□ 0.29
COL4A6-206ENST00000477085 TCP10L2B9ZVM9 353 aa16.86■□□□□ 0.29
COL4A6-206ENST00000477085 WNT10BO00744 389 aa16.86■□□□□ 0.29
COL4A6-206ENST00000477085 YBX3P16989 372 aaKnown RBP eCLIP16.86■□□□□ 0.29
COL4A6-206ENST00000477085 IFNAR1P17181 557 aa16.86■□□□□ 0.29
COL4A6-206ENST00000477085 GMPSP49915 693 aaPredicted RBP16.86■□□□□ 0.29
COL4A6-206ENST00000477085 FUT2Q10981 343 aa16.86■□□□□ 0.29
COL4A6-206ENST00000477085 OTUD7BQ6GQQ9 843 aa16.86■□□□□ 0.29
COL4A6-206ENST00000477085 FAM173BQ6P4H8 233 aa16.86■□□□□ 0.29
COL4A6-206ENST00000477085 METTL16Q86W50 562 aaKnown RBP16.86■□□□□ 0.29
COL4A6-206ENST00000477085 CEP95Q96GE4 821 aa16.86■□□□□ 0.29
COL4A6-206ENST00000477085 TMEM47Q9BQJ4 181 aa16.86■□□□□ 0.29
COL4A6-206ENST00000477085 MYOZ2Q9NPC6 264 aa16.86■□□□□ 0.29
COL4A6-206ENST00000477085 PI4KBQ9UBF8 816 aa16.86■□□□□ 0.29
COL4A6-206ENST00000477085 IGKV6D-41A0A0C4DH26 115 aa16.85■□□□□ 0.29
COL4A6-206ENST00000477085 HLA-DOAP06340 250 aa16.85■□□□□ 0.29
COL4A6-206ENST00000477085 GUCY1A2P33402 732 aa16.85■□□□□ 0.29
COL4A6-206ENST00000477085 GUCY1B3Q02153 619 aa16.85■□□□□ 0.29
COL4A6-206ENST00000477085 SHROOM1Q2M3G4 852 aaPredicted RBP16.85■□□□□ 0.29
COL4A6-206ENST00000477085 ATRNL1Q5VV63 1379 aa16.85■□□□□ 0.29
COL4A6-206ENST00000477085 CCDC82Q8N4S0 544 aa16.85■□□□□ 0.29
COL4A6-206ENST00000477085 CRACR2BQ8N4Y2 399 aaPredicted RBP16.85■□□□□ 0.29
COL4A6-206ENST00000477085 SWAP70Q9UH65 585 aa16.85■□□□□ 0.29
COL4A6-206ENST00000477085 DDAH1O94760 285 aa16.84■□□□□ 0.29
COL4A6-206ENST00000477085 PLEKHA8P1O95397 391 aa16.84■□□□□ 0.29
COL4A6-206ENST00000477085 FMNL1O95466 1100 aaPredicted RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms