RNA–Protein interactions for RNA: ENST00000474825.1

ATG4A-207, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-207ENST00000474825 PFKFB2O60825 505 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 PDIA3P30101 505 aaKnown RBP7.8□□□□□ -1.16
ATG4A-207ENST00000474825 NOVP48745 357 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 RCAN1P53805 252 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 C1QTNF8P60827 252 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 CTDSPL2Q05D32 466 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 GABPAQ06546 454 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 CXCL9Q07325 125 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 SEC23AQ15436 765 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 CDC42EP5Q6NZY7 148 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 CLEC17AQ6ZS10 378 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 MFSD6Q6ZSS7 791 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 RALYLQ86SE5 291 aaKnown RBP7.8□□□□□ -1.16
ATG4A-207ENST00000474825 METTL16Q86W50 562 aaKnown RBP7.8□□□□□ -1.16
ATG4A-207ENST00000474825 NIM1KQ8IY84 436 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 TEX11Q8IYF3 940 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 RGS22Q8NE09 1264 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 SMARCC2Q8TAQ2 1214 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 TGFBRAP1Q8WUH2 860 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 ANKS1AQ92625 1134 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 BRF1Q92994 677 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 GTF3C6Q969F1 213 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 CHMP4CQ96CF2 233 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 BCS1LQ9Y276 419 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 COL2A1P02458 1487 aaPredicted RBP7.8□□□□□ -1.16
ATG4A-207ENST00000474825 DDX60LQ5H9U9 1706 aaKnown RBP7.79□□□□□ -1.16
ATG4A-207ENST00000474825 B4E1Z4 1266 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 SMIM22K7EJ46 135 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 SLC3A2P08195 630 aaKnown RBP7.79□□□□□ -1.16
ATG4A-207ENST00000474825 USP17L8P0C7I0 530 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 PDIA4P13667 645 aaKnown RBP7.79□□□□□ -1.16
ATG4A-207ENST00000474825 RPS12P25398 132 aaKnown RBP7.79□□□□□ -1.16
ATG4A-207ENST00000474825 USP5P45974 858 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 PTPN5P54829 565 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 ZNF280AP59817 542 aaPredicted RBP7.79□□□□□ -1.16
ATG4A-207ENST00000474825 RAB3GAP1Q15042 981 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 FKBP1CQ5VVH2 108 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 ARHGAP27Q6ZUM4 889 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 C16orf86Q6ZW13 317 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 KIAA0825Q8IV33 1275 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 TMTC2Q8N394 836 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 ESR2Q92731 530 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 DPF2Q92785 391 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 TCEANC2Q96MN5 208 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 LLPHQ9BRT6 129 aaKnown RBP7.79□□□□□ -1.16
ATG4A-207ENST00000474825 LY9Q9HBG7 655 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 GPBP1L1Q9HC44 474 aaPredicted RBP7.79□□□□□ -1.16
ATG4A-207ENST00000474825 INCENPQ9NQS7 918 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 TCP11L1Q9NUJ3 509 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 MCM9Q9NXL9 1143 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 ANGEL1Q9UNK9 670 aaKnown RBP7.79□□□□□ -1.16
ATG4A-207ENST00000474825 HPS5Q9UPZ3 1129 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.79□□□□□ -1.16
ATG4A-207ENST00000474825 ARFGEF1Q9Y6D6 1849 aa7.79□□□□□ -1.16
ATG4A-207ENST00000474825 MYH2Q9UKX2 1941 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 CYP2D7A0A087X1C5 515 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 MINDY4BA8MYZ0 360 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 KDM4AO75164 1064 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 ENTPD3O75355 529 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 RAD17O75943 681 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 CYP2D6P10635 497 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 SCNN1DP51172 638 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 PLCD1P51178 756 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 NUCB2P80303 420 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 PDE4BQ07343 736 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 SCRN1Q12765 414 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 TNIP1Q15025 636 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 CIAPIN1Q6FI81 312 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 MAPKAPK5Q8IW41 473 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 JDP2Q8WYK2 163 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 OSBPL5Q9H0X9 879 aaPredicted RBP7.78□□□□□ -1.16
ATG4A-207ENST00000474825 EHD4Q9H223 541 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 SLKQ9H2G2 1235 aaPredicted RBP7.78□□□□□ -1.16
ATG4A-207ENST00000474825 DDX4Q9NQI0 724 aaKnown RBP7.78□□□□□ -1.16
ATG4A-207ENST00000474825 GPHNQ9NQX3 736 aaPredicted RBP7.78□□□□□ -1.16
ATG4A-207ENST00000474825 USP40Q9NVE5 1235 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 FAM198AQ9UFP1 575 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 BRPF3Q9ULD4 1205 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 VPS9D1Q9Y2B5 631 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 ATRNL1Q5VV63 1379 aa7.78□□□□□ -1.16
ATG4A-207ENST00000474825 PLIN4Q96Q06 1357 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 F8W031 263 aaPredicted RBP7.77□□□□□ -1.17
ATG4A-207ENST00000474825 CTDNEP1O95476 244 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 BRD1O95696 1058 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 APOBRQ0VD83 1088 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 PPP2R5BQ15173 497 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 CFAP100Q494V2 611 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 CCDC178Q5BJE1 867 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 APOA5Q6Q788 366 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 THSD4Q6ZMP0 1018 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 CHST3Q7LGC8 479 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 TTC6Q86TZ1 520 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 CCDC83Q8IWF9 413 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 AMOTL1Q8IY63 956 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 NECAB1Q8N987 351 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 FBXW7Q969H0 707 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 PRMT6Q96LA8 375 aaPredicted RBP7.77□□□□□ -1.17
ATG4A-207ENST00000474825 LARP6Q9BRS8 491 aaKnown RBP7.77□□□□□ -1.17
ATG4A-207ENST00000474825 SLC4A5Q9BY07 1137 aa7.77□□□□□ -1.17
ATG4A-207ENST00000474825 LRRC2Q9BYS8 371 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms