RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 TNFAIP1Q13829 316 aa8.4□□□□□ -1.06
LIMD1-204ENST00000474665 RRP1BQ14684 758 aaKnown RBP8.4□□□□□ -1.06
LIMD1-204ENST00000474665 CWC27Q6UX04 472 aaKnown RBP8.4□□□□□ -1.06
LIMD1-204ENST00000474665 UBE2Q1Q7Z7E8 422 aa8.4□□□□□ -1.06
LIMD1-204ENST00000474665 DNAJC18Q9H819 358 aa8.4□□□□□ -1.06
LIMD1-204ENST00000474665 HELLSQ9NRZ9 838 aa8.4□□□□□ -1.06
LIMD1-204ENST00000474665 TMOD2Q9NZR1 351 aa8.4□□□□□ -1.06
LIMD1-204ENST00000474665 SAP30BPQ9UHR5 308 aaKnown RBP8.4□□□□□ -1.06
LIMD1-204ENST00000474665 PALD1Q9ULE6 856 aa8.4□□□□□ -1.06
LIMD1-204ENST00000474665 PPP2R3BQ9Y5P8 575 aa8.4□□□□□ -1.06
LIMD1-204ENST00000474665 TMEM265A0A087WTH1 108 aa8.39□□□□□ -1.07
LIMD1-204ENST00000474665 CYP2D7A0A087X1C5 515 aa8.39□□□□□ -1.07
LIMD1-204ENST00000474665 MANSC4A6NHS7 340 aaPredicted RBP8.39□□□□□ -1.07
LIMD1-204ENST00000474665 FAM196BA6NMK8 535 aa8.39□□□□□ -1.07
LIMD1-204ENST00000474665 PHF20L1A8MW92 1017 aa8.39□□□□□ -1.07
LIMD1-204ENST00000474665 EVI5O60447 810 aa8.39□□□□□ -1.07
LIMD1-204ENST00000474665 USP2O75604 605 aaPredicted RBP8.39□□□□□ -1.07
LIMD1-204ENST00000474665 PLCD1P51178 756 aa8.39□□□□□ -1.07
LIMD1-204ENST00000474665 INHBEP58166 350 aa8.39□□□□□ -1.07
LIMD1-204ENST00000474665 MCMDC2Q4G0Z9 681 aa8.39□□□□□ -1.07
LIMD1-204ENST00000474665 MIGA2Q7L4E1 593 aa8.39□□□□□ -1.07
LIMD1-204ENST00000474665 METTL16Q86W50 562 aaKnown RBP8.39□□□□□ -1.07
LIMD1-204ENST00000474665 GUCD1Q96NT3 240 aa8.39□□□□□ -1.07
LIMD1-204ENST00000474665 NOL10Q9BSC4 688 aaKnown RBP8.39□□□□□ -1.07
LIMD1-204ENST00000474665 CRNKL1Q9BZJ0 848 aaKnown RBP8.39□□□□□ -1.07
LIMD1-204ENST00000474665 TACC3Q9Y6A5 838 aa8.39□□□□□ -1.07
LIMD1-204ENST00000474665 SLC4A4Q9Y6R1 1079 aa8.39□□□□□ -1.07
LIMD1-204ENST00000474665 CCDC171Q6TFL3 1326 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 USP17L12C9JPN9 530 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 USP17L21D6R901 530 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 SGSM2O43147 1006 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 TNNI2P48788 182 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 JAG1P78504 1218 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 GABPAQ06546 454 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 MAP3K11Q16584 847 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 SHROOM1Q2M3G4 852 aaPredicted RBP8.38□□□□□ -1.07
LIMD1-204ENST00000474665 LRRFIP1Q32MZ4 808 aaKnown RBP8.38□□□□□ -1.07
LIMD1-204ENST00000474665 LRIT3Q3SXY7 679 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 LDLRAD1Q5T700 205 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 CTR9Q6PD62 1173 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.38□□□□□ -1.07
LIMD1-204ENST00000474665 CERS3Q8IU89 383 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 SNX27Q96L92 541 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 FAM161BQ96MY7 647 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 GDF15Q99988 308 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 DIAPH3Q9NSV4 1193 aa8.38□□□□□ -1.07
LIMD1-204ENST00000474665 MYH8P13535 1937 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 PATL2C9JE40 543 aaKnown RBP8.37□□□□□ -1.07
LIMD1-204ENST00000474665 FGAP02671 866 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 HSPD1P10809 573 aaKnown RBP8.37□□□□□ -1.07
LIMD1-204ENST00000474665 BMP8BP34820 402 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 USP5P45974 858 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 PTH1RQ03431 593 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 ALX1Q15699 326 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 SUPT20HL1Q3ZLR7 823 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 C12orf60Q5U649 245 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 GIMAP6Q6P9H5 292 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 IFNL3Q8IZI9 196 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 SLC44A5Q8NCS7 719 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 NKX2-3Q8TAU0 364 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 SLC10A4Q96EP9 437 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 DYNLL2Q96FJ2 89 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 CLMNQ96JQ2 1002 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 NBPF3Q9H094 633 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 ATP8A2Q9NTI2 1148 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 MCM9Q9NXL9 1143 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 ZNF112Q9UJU3 913 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 PHIPQ8WWQ0 1821 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 LAMB1P07942 1786 aa8.37□□□□□ -1.07
LIMD1-204ENST00000474665 ATAD5Q96QE3 1844 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 TNFRSF10AO00220 468 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 HIP1O00291 1037 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 TBC1D12O60347 775 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 GNAT2P19087 354 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 INPP5BP32019 993 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 SHMT1P34896 483 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 SBK1Q52WX2 424 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 ARMC9Q7Z3E5 817 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 ZSCAN29Q8IWY8 852 aaPredicted RBP8.36□□□□□ -1.07
LIMD1-204ENST00000474665 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.36□□□□□ -1.07
LIMD1-204ENST00000474665 SYMPKQ92797 1274 aaKnown RBP8.36□□□□□ -1.07
LIMD1-204ENST00000474665 PTPN18Q99952 460 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 ESYT1Q9BSJ8 1104 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 ARHGAP39Q9C0H5 1083 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 DHX36Q9H2U1 1008 aaKnown RBP8.36□□□□□ -1.07
LIMD1-204ENST00000474665 INCENPQ9NQS7 918 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.36□□□□□ -1.07
LIMD1-204ENST00000474665 PI4KBQ9UBF8 816 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 ANGEL1Q9UNK9 670 aaKnown RBP8.36□□□□□ -1.07
LIMD1-204ENST00000474665 TAF6LQ9Y6J9 622 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 PTPRFP10586 1907 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 LAMA4Q16363 1823 aa8.36□□□□□ -1.07
LIMD1-204ENST00000474665 RAD50Q92878 1312 aa8.35□□□□□ -1.07
LIMD1-204ENST00000474665 GREB1LQ9C091 1923 aaPredicted RBP8.35□□□□□ -1.07
LIMD1-204ENST00000474665 CDC45O75419 566 aa8.35□□□□□ -1.07
LIMD1-204ENST00000474665 FARP2O94887 1054 aaPredicted RBP8.35□□□□□ -1.07
LIMD1-204ENST00000474665 NF2P35240 595 aa8.35□□□□□ -1.07
LIMD1-204ENST00000474665 GJA5P36382 358 aa8.35□□□□□ -1.07
LIMD1-204ENST00000474665 GJA8P48165 433 aa8.35□□□□□ -1.07
LIMD1-204ENST00000474665 ARHGEF6Q15052 776 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms