RNA–Protein interactions for RNA: ENST00000474412.1

VPS50-211, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-211ENST00000474412 TUT1Q9H6E5 874 aaKnown RBP9.53□□□□□ -0.88
VPS50-211ENST00000474412 ELP3Q9H9T3 547 aa9.53□□□□□ -0.88
VPS50-211ENST00000474412 POLKQ9UBT6 870 aa9.53□□□□□ -0.88
VPS50-211ENST00000474412 EGFL7Q9UHF1 273 aa9.53□□□□□ -0.88
VPS50-211ENST00000474412 CHD4Q14839 1912 aa9.52□□□□□ -0.88
VPS50-211ENST00000474412 AFF1P51825 1210 aaKnown RBP9.52□□□□□ -0.89
VPS50-211ENST00000474412 TRIM28Q13263 835 aaKnown RBP9.52□□□□□ -0.89
VPS50-211ENST00000474412 ZNF827Q17R98 1081 aa9.52□□□□□ -0.89
VPS50-211ENST00000474412 GLYCTKQ8IVS8 523 aa9.52□□□□□ -0.89
VPS50-211ENST00000474412 PLD4Q96BZ4 506 aa9.52□□□□□ -0.89
VPS50-211ENST00000474412 POLIQ9UNA4 740 aa9.52□□□□□ -0.89
VPS50-211ENST00000474412 WASHC2AQ641Q2 1341 aa9.52□□□□□ -0.89
VPS50-211ENST00000474412 FAM229AH3BQW9 127 aa9.51□□□□□ -0.89
VPS50-211ENST00000474412 ICMTO60725 284 aa9.51□□□□□ -0.89
VPS50-211ENST00000474412 HOXD8P13378 290 aaPredicted RBP9.51□□□□□ -0.89
VPS50-211ENST00000474412 HYAL2Q12891 473 aa9.51□□□□□ -0.89
VPS50-211ENST00000474412 EIF4A2Q14240 407 aaKnown RBP9.51□□□□□ -0.89
VPS50-211ENST00000474412 ZCRB1Q8TBF4 217 aaKnown RBP9.51□□□□□ -0.89
VPS50-211ENST00000474412 SYTL4Q96C24 671 aaPredicted RBP9.51□□□□□ -0.89
VPS50-211ENST00000474412 TMEM63CQ9P1W3 806 aa9.51□□□□□ -0.89
VPS50-211ENST00000474412 KIAA1551Q9HCM1 1747 aa9.51□□□□□ -0.89
VPS50-211ENST00000474412 KDM6AO15550 1401 aaPredicted RBP9.5□□□□□ -0.89
VPS50-211ENST00000474412 A6NHS1 94 aa9.5□□□□□ -0.89
VPS50-211ENST00000474412 CYP27B1O15528 508 aa9.5□□□□□ -0.89
VPS50-211ENST00000474412 RAPGEF4Q8WZA2 1011 aa9.5□□□□□ -0.89
VPS50-211ENST00000474412 SPACA7Q96KW9 195 aa9.5□□□□□ -0.89
VPS50-211ENST00000474412 PCDH11XQ9BZA7 1347 aa9.5□□□□□ -0.89
VPS50-211ENST00000474412 PCDH11YQ9BZA8 1340 aa9.5□□□□□ -0.89
VPS50-211ENST00000474412 ZBTB7AO95365 584 aa9.49□□□□□ -0.89
VPS50-211ENST00000474412 IGHA1P01876 353 aa9.49□□□□□ -0.89
VPS50-211ENST00000474412 USP5P45974 858 aa9.49□□□□□ -0.89
VPS50-211ENST00000474412 RAC1P63000 192 aa9.49□□□□□ -0.89
VPS50-211ENST00000474412 DMRTC2Q8IXT2 367 aaPredicted RBP9.49□□□□□ -0.89
VPS50-211ENST00000474412 IGSF1Q8N6C5 1336 aa9.49□□□□□ -0.89
VPS50-211ENST00000474412 MSTNO14793 375 aa9.48□□□□□ -0.89
VPS50-211ENST00000474412 FZD6O60353 706 aa9.48□□□□□ -0.89
VPS50-211ENST00000474412 CYP2E1P05181 493 aaPredicted RBP9.48□□□□□ -0.89
VPS50-211ENST00000474412 SLC15A2Q16348 729 aa9.48□□□□□ -0.89
VPS50-211ENST00000474412 MSL1Q68DK7 614 aa9.48□□□□□ -0.89
VPS50-211ENST00000474412 WFDC8Q8IUA0 241 aa9.48□□□□□ -0.89
VPS50-211ENST00000474412 AEBP1Q8IUX7 1158 aa9.48□□□□□ -0.89
VPS50-211ENST00000474412 TTC9Q92623 222 aa9.48□□□□□ -0.89
VPS50-211ENST00000474412 CCDC87Q9NVE4 849 aa9.48□□□□□ -0.89
VPS50-211ENST00000474412 PALLDQ8WX93 1383 aa9.48□□□□□ -0.89
VPS50-211ENST00000474412 N4BP2Q86UW6 1770 aaPredicted RBP9.47□□□□□ -0.89
VPS50-211ENST00000474412 KIF13BQ9NQT8 1826 aa9.47□□□□□ -0.89
VPS50-211ENST00000474412 BRCA1P38398 1863 aaKnown RBP9.47□□□□□ -0.89
VPS50-211ENST00000474412 A0A0A0MRY4 1105 aa9.47□□□□□ -0.89
VPS50-211ENST00000474412 EHHADHQ08426 723 aa9.47□□□□□ -0.89
VPS50-211ENST00000474412 CNGB1Q14028 1251 aaPredicted RBP9.47□□□□□ -0.89
VPS50-211ENST00000474412 GRIK5Q16478 980 aa9.47□□□□□ -0.89
VPS50-211ENST00000474412 COL13A1Q5TAT6 717 aaPredicted RBP9.47□□□□□ -0.89
VPS50-211ENST00000474412 GDF6Q6KF10 455 aaPredicted RBP9.47□□□□□ -0.89
VPS50-211ENST00000474412 XKR5Q6UX68 686 aa9.47□□□□□ -0.89
VPS50-211ENST00000474412 NCAPG2Q86XI2 1143 aa9.47□□□□□ -0.89
VPS50-211ENST00000474412 STK32BQ9NY57 414 aa9.47□□□□□ -0.89
VPS50-211ENST00000474412 KANSL3Q9P2N6 904 aa9.47□□□□□ -0.89
VPS50-211ENST00000474412 MRC1P22897 1456 aa9.47□□□□□ -0.89
VPS50-211ENST00000474412 ITGB2P05107 769 aa9.46□□□□□ -0.9
VPS50-211ENST00000474412 CES1P23141 567 aa9.46□□□□□ -0.9
VPS50-211ENST00000474412 CC2D1BQ5T0F9 858 aaKnown RBP9.46□□□□□ -0.9
VPS50-211ENST00000474412 MORC1Q86VD1 984 aa9.46□□□□□ -0.9
VPS50-211ENST00000474412 CNTN3Q9P232 1028 aa9.46□□□□□ -0.9
VPS50-211ENST00000474412 PNPLA7Q6ZV29 1317 aa9.46□□□□□ -0.9
VPS50-211ENST00000474412 KDRP35968 1356 aa9.46□□□□□ -0.9
VPS50-211ENST00000474412 AFDNP55196 1824 aaKnown RBP9.45□□□□□ -0.9
VPS50-211ENST00000474412 CACNA1SQ13698 1873 aa9.45□□□□□ -0.9
VPS50-211ENST00000474412 C1QTNF9BB2RNN3 333 aa9.45□□□□□ -0.9
VPS50-211ENST00000474412 BRD1O95696 1058 aa9.45□□□□□ -0.9
VPS50-211ENST00000474412 CHRNA4P43681 627 aa9.45□□□□□ -0.9
VPS50-211ENST00000474412 CD163Q86VB7 1156 aa9.45□□□□□ -0.9
VPS50-211ENST00000474412 NACC1Q96RE7 527 aa9.45□□□□□ -0.9
VPS50-211ENST00000474412 SPOCK3Q9BQ16 436 aa9.45□□□□□ -0.9
VPS50-211ENST00000474412 BRPF3Q9ULD4 1205 aa9.45□□□□□ -0.9
VPS50-211ENST00000474412 KNSTRNQ9Y448 316 aa9.45□□□□□ -0.9
VPS50-211ENST00000474412 LAMB4A4D0S4 1761 aa9.45□□□□□ -0.9
VPS50-211ENST00000474412 KIF4AO95239 1232 aa9.44□□□□□ -0.9
VPS50-211ENST00000474412 PHKG2P15735 406 aa9.44□□□□□ -0.9
VPS50-211ENST00000474412 ATP11AP98196 1134 aa9.44□□□□□ -0.9
VPS50-211ENST00000474412 GRIK4Q16099 956 aa9.44□□□□□ -0.9
VPS50-211ENST00000474412 MPRIPQ6WCQ1 1025 aa9.44□□□□□ -0.9
VPS50-211ENST00000474412 AMIGO3Q86WK7 504 aa9.44□□□□□ -0.9
VPS50-211ENST00000474412 C1orf127Q8N9H9 656 aa9.44□□□□□ -0.9
VPS50-211ENST00000474412 SPON1Q9HCB6 807 aa9.44□□□□□ -0.9
VPS50-211ENST00000474412 CCNL1Q9UK58 526 aaPredicted RBP9.44□□□□□ -0.9
VPS50-211ENST00000474412 SCN7AQ01118 1682 aa9.44□□□□□ -0.9
VPS50-211ENST00000474412 BCORQ6W2J9 1755 aa9.44□□□□□ -0.9
VPS50-211ENST00000474412 KCPQ6ZWJ8 1503 aa9.43□□□□□ -0.9
VPS50-211ENST00000474412 NDUFB5O43674 189 aa9.43□□□□□ -0.9
VPS50-211ENST00000474412 PHACTR2O75167 634 aa9.43□□□□□ -0.9
VPS50-211ENST00000474412 SMNDC1O75940 238 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS50-211ENST00000474412 ELNP15502 786 aa9.43□□□□□ -0.9
VPS50-211ENST00000474412 CEP135Q66GS9 1140 aa9.43□□□□□ -0.9
VPS50-211ENST00000474412 SMIM5Q71RC9 77 aa9.43□□□□□ -0.9
VPS50-211ENST00000474412 GJD3Q8N144 294 aa9.43□□□□□ -0.9
VPS50-211ENST00000474412 IL22RA1Q8N6P7 574 aa9.43□□□□□ -0.9
VPS50-211ENST00000474412 SNX29Q8TEQ0 813 aa9.43□□□□□ -0.9
VPS50-211ENST00000474412 PMEPA1Q969W9 287 aa9.43□□□□□ -0.9
VPS50-211ENST00000474412 TRIM33Q9UPN9 1127 aa9.43□□□□□ -0.9
VPS50-211ENST00000474412 KDM3BQ7LBC6 1761 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms