RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	KLF4	O43474	513 aa		5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	RNGTT	O60942	597 aa	Known RBP	5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	NME1	P15531	152 aa	Known RBP	5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	YARS	P54577	528 aa	Known RBP	5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	NKG7	Q16617	165 aa		5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	FBXW10	Q5XX13	1052 aa		5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	OVOS1	Q6IE37	1185 aa		5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	SEZ6L2	Q6UXD5	910 aa		5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	CKAP2L	Q8IYA6	745 aa		5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	FAM169B	Q8N8A8	192 aa		5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	UTP4	Q969X6	686 aa	Known RBP	5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	ANAPC16	Q96DE5	110 aa		5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	SEMA6C	Q9H3T2	930 aa		5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	ANTXR1	Q9H6X2	564 aa		5.96	□□□□□ -1.46
PTCD3-209	ENST00000472044	CHURC1-FNTB	B4DL54	471 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	LRIG2	O94898	1065 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	CST3	P01034	146 aa	Predicted RBP	5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	BMP3	P12645	472 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	CCNF	P41002	786 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	RASSF7	Q02833	373 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	MAP7	Q14244	749 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	SGO2	Q562F6	1265 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	NLRC3	Q7RTR2	1065 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	UBE3D	Q7Z6J8	389 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	FAM20C	Q8IXL6	584 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	MFSD2A	Q8NA29	543 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	FBLIM1	Q8WUP2	373 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	PSMG3-AS1	Q96PY0	264 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	FOXQ1	Q9C009	403 aa		5.95	□□□□□ -1.46
PTCD3-209	ENST00000472044	UPK3BL1	B0FP48	263 aa		5.94	□□□□□ -1.46
PTCD3-209	ENST00000472044	UPK3BL2	E5RIL1	263 aa		5.94	□□□□□ -1.46
PTCD3-209	ENST00000472044	SMAD7	O15105	426 aa	Known RBP	5.94	□□□□□ -1.46
PTCD3-209	ENST00000472044	DHX15	O43143	795 aa	Known RBP	5.94	□□□□□ -1.46
PTCD3-209	ENST00000472044	NFIC	P08651	508 aa		5.94	□□□□□ -1.46
PTCD3-209	ENST00000472044	GUCY2C	P25092	1073 aa		5.94	□□□□□ -1.46
PTCD3-209	ENST00000472044	MAP4	P27816	1152 aa	Known RBP	5.94	□□□□□ -1.46
PTCD3-209	ENST00000472044	GATA4	P43694	442 aa		5.94	□□□□□ -1.46
PTCD3-209	ENST00000472044	ANKS3	Q6ZW76	656 aa		5.94	□□□□□ -1.46
PTCD3-209	ENST00000472044	FAM13C	Q8NE31	585 aa		5.94	□□□□□ -1.46
PTCD3-209	ENST00000472044	DNAJC2	Q99543	621 aa	Known RBP	5.94	□□□□□ -1.46
PTCD3-209	ENST00000472044	SSU72	Q9NP77	194 aa	Known RBP	5.94	□□□□□ -1.46
PTCD3-209	ENST00000472044	SLC12A7	Q9Y666	1083 aa		5.94	□□□□□ -1.46
PTCD3-209	ENST00000472044	RGS13	O14921	159 aa		5.93	□□□□□ -1.46
PTCD3-209	ENST00000472044	ACR	P10323	421 aa		5.93	□□□□□ -1.46
PTCD3-209	ENST00000472044	RAB6A	P20340	208 aa		5.93	□□□□□ -1.46
PTCD3-209	ENST00000472044	RAB33A	Q14088	237 aa		5.93	□□□□□ -1.46
PTCD3-209	ENST00000472044	ARSH	Q5FYA8	562 aa		5.93	□□□□□ -1.46
PTCD3-209	ENST00000472044	PRAMEF13	Q5VWM6	474 aa		5.93	□□□□□ -1.46
PTCD3-209	ENST00000472044	CLEC10A	Q8IUN9	316 aa		5.93	□□□□□ -1.46
PTCD3-209	ENST00000472044	CCDC74B	Q96LY2	380 aa		5.93	□□□□□ -1.46
PTCD3-209	ENST00000472044	FAM83C	Q9BQN1	747 aa		5.93	□□□□□ -1.46
PTCD3-209	ENST00000472044	KLHL3	Q9UH77	587 aa		5.93	□□□□□ -1.46
PTCD3-209	ENST00000472044	DAGLA	Q9Y4D2	1042 aa		5.93	□□□□□ -1.46
PTCD3-209	ENST00000472044	FAM95C	A0A1B0GW59	222 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044		A0A1W2PQH9	124 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	ITGB2	P05107	769 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	RAG1	P15918	1043 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	SERINC3	Q13530	473 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	PLA2G4E	Q3MJ16	856 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	RUFY4	Q6ZNE9	571 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	BEND4	Q6ZU67	534 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	ARMCX6	Q7L4S7	300 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	TTC6	Q86TZ1	520 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	CYB5D2	Q8WUJ1	264 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	MKL1	Q969V6	931 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	SLC9A7	Q96T83	725 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	LNPK	Q9C0E8	428 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	TNKS2	Q9H2K2	1166 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	C1GALT1	Q9NS00	363 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	ACTR10	Q9NZ32	417 aa		5.92	□□□□□ -1.46
PTCD3-209	ENST00000472044	DYNC1LI2	O43237	492 aa	Predicted RBP	5.91	□□□□□ -1.46
PTCD3-209	ENST00000472044	RXRB	P28702	533 aa		5.91	□□□□□ -1.46
PTCD3-209	ENST00000472044	PAOX	Q6QHF9	649 aa		5.91	□□□□□ -1.46
PTCD3-209	ENST00000472044	UNC5A	Q6ZN44	842 aa		5.91	□□□□□ -1.46
PTCD3-209	ENST00000472044	DPH6	Q7L8W6	267 aa		5.91	□□□□□ -1.46
PTCD3-209	ENST00000472044	SIRPG	Q9P1W8	387 aa		5.91	□□□□□ -1.46
PTCD3-209	ENST00000472044	RAX	Q9Y2V3	346 aa		5.91	□□□□□ -1.46
PTCD3-209	ENST00000472044	R3HCC1	Q9Y3T6	440 aa	Known RBP	5.91	□□□□□ -1.46
PTCD3-209	ENST00000472044	GDF11	O95390	407 aa		5.9	□□□□□ -1.46
PTCD3-209	ENST00000472044	NFKBIB	Q15653	356 aa		5.9	□□□□□ -1.46
PTCD3-209	ENST00000472044	PHACTR4	Q8IZ21	702 aa		5.9	□□□□□ -1.46
PTCD3-209	ENST00000472044	TMEM151A	Q8N4L1	468 aa		5.9	□□□□□ -1.46
PTCD3-209	ENST00000472044	GIMAP7	Q8NHV1	300 aa		5.9	□□□□□ -1.46
PTCD3-209	ENST00000472044	PPP1R13L	Q8WUF5	828 aa		5.9	□□□□□ -1.46
PTCD3-209	ENST00000472044	HNRNPLL	Q8WVV9	542 aa	Known RBP	5.9	□□□□□ -1.46
PTCD3-209	ENST00000472044	TP53INP1	Q96A56	240 aa		5.9	□□□□□ -1.46
PTCD3-209	ENST00000472044	KIF2C	Q99661	725 aa		5.9	□□□□□ -1.46
PTCD3-209	ENST00000472044	DPH2	Q9BQC3	489 aa	Predicted RBP	5.9	□□□□□ -1.46
PTCD3-209	ENST00000472044	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	5.9	□□□□□ -1.46
PTCD3-209	ENST00000472044	KCNF1	Q9H3M0	494 aa		5.9	□□□□□ -1.46
PTCD3-209	ENST00000472044	CEP131	Q9UPN4	1083 aa		5.9	□□□□□ -1.46
PTCD3-209	ENST00000472044	UBOX5	O94941	541 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	GBP1	P32455	592 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	ZYX	Q15942	572 aa	Known RBP	5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	PPP2R5E	Q16537	467 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	FXN	Q16595	210 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	PRR23C	Q6ZRP0	262 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	LRP10	Q7Z4F1	713 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	DNAJB8	Q8NHS0	232 aa		5.89	□□□□□ -1.47

Retrieved 100 of 20,778 RNA–protein pairs in 20 ms