RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 BRAPQ7Z569 592 aa15.74■□□□□ 0.11
CCDC88A-211ENST00000471947 XPO4Q9C0E2 1151 aaKnown RBP15.74■□□□□ 0.11
CCDC88A-211ENST00000471947 KIAA1468Q9P260 1216 aa15.74■□□□□ 0.11
CCDC88A-211ENST00000471947 LRRC37A3O60309 1634 aa15.74■□□□□ 0.11
CCDC88A-211ENST00000471947 PLCD1P51178 756 aa15.74■□□□□ 0.11
CCDC88A-211ENST00000471947 SNAP25P60880 206 aa15.74■□□□□ 0.11
CCDC88A-211ENST00000471947 LETM2Q2VYF4 491 aa15.74■□□□□ 0.11
CCDC88A-211ENST00000471947 KRI1Q8N9T8 703 aaKnown RBP15.74■□□□□ 0.11
CCDC88A-211ENST00000471947 NSUN4Q96CB9 384 aaKnown RBP15.74■□□□□ 0.11
CCDC88A-211ENST00000471947 ZFP91Q96JP5 570 aaPredicted RBP15.74■□□□□ 0.11
CCDC88A-211ENST00000471947 DEXIO95424 95 aa15.73■□□□□ 0.11
CCDC88A-211ENST00000471947 UVSSAQ2YD98 709 aa15.73■□□□□ 0.11
CCDC88A-211ENST00000471947 PRR5LQ6MZQ0 368 aa15.73■□□□□ 0.11
CCDC88A-211ENST00000471947 PNMA1Q8ND90 353 aa15.73■□□□□ 0.11
CCDC88A-211ENST00000471947 TTF2Q9UNY4 1162 aaKnown RBP15.73■□□□□ 0.11
CCDC88A-211ENST00000471947 UBASH3AP57075 661 aa15.73■□□□□ 0.11
CCDC88A-211ENST00000471947 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.73■□□□□ 0.11
CCDC88A-211ENST00000471947 CACTINQ8WUQ7 758 aaKnown RBP15.73■□□□□ 0.11
CCDC88A-211ENST00000471947 SLC16A2P36021 539 aa15.73■□□□□ 0.11
CCDC88A-211ENST00000471947 CSRNP2Q9H175 543 aa15.73■□□□□ 0.11
CCDC88A-211ENST00000471947 KIF1AQ12756 1690 aa15.73■□□□□ 0.11
CCDC88A-211ENST00000471947 LMO7Q8WWI1 1683 aa15.73■□□□□ 0.11
CCDC88A-211ENST00000471947 KDM3BQ7LBC6 1761 aa15.73■□□□□ 0.11
CCDC88A-211ENST00000471947 NAPAP54920 295 aa15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 SMARCE1Q969G3 411 aa15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 ZSWIM4Q9H7M6 989 aa15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 RTEL1Q9NZ71 1219 aa15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 MROH7-TTC4A0A0A0MT08 1334 aa15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 KRT2P35908 639 aa15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 RAD51AP2Q09MP3 1159 aa15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 INF2Q27J81 1249 aa15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 SOGA3Q5TF21 947 aa15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 CLEC4GQ6UXB4 293 aa15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 NBPF11Q86T75 865 aa15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 OFD1O75665 1012 aa15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 EARS2Q5JPH6 523 aaKnown RBP15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 NOC3LQ8WTT2 800 aaKnown RBP15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 PRDM10Q9NQV6 1147 aa15.72■□□□□ 0.11
CCDC88A-211ENST00000471947 MMP10P09238 476 aa15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 CCT6AP40227 531 aaKnown RBP15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 SHC4Q6S5L8 630 aa15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 KRT27Q7Z3Y8 459 aa15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 FANCLQ9NW38 375 aa15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 MRC1P22897 1456 aa15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 PRR29P0C7W0 189 aa15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 SFPQP23246 707 aaKnown RBP eCLIP15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 VPS72Q15906 364 aa15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 ENOX2Q16206 610 aaKnown RBP15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 PDLIM2Q96JY6 352 aa15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 PP2D1A8MPX8 630 aa15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 CTAGE5O15320 804 aa15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 NAA30Q147X3 362 aaPredicted RBP15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 SLC39A14Q15043 492 aa15.71■□□□□ 0.11
CCDC88A-211ENST00000471947 ELP1O95163 1332 aa15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 IDEP14735 1019 aa15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 PTGDRQ13258 359 aa15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 SPTY2D1Q68D10 685 aaPredicted RBP15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 TMTC2Q8N394 836 aa15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 POLD4Q9HCU8 107 aa15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 KCNQ5Q9NR82 932 aa15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 FAM217BQ9NTX9 383 aaPredicted RBP15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 BIN2Q9UBW5 565 aaPredicted RBP15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 AFDNP55196 1824 aaKnown RBP15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 KCPQ6ZWJ8 1503 aa15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 SPDYE4A6NLX3 237 aa15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 CHRNA5P30532 468 aa15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 SNW1Q13573 536 aaKnown RBP15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 DPP8Q6V1X1 898 aaPredicted RBP15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 TRPM3Q9HCF6 1732 aaPredicted RBP15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 TNNI2P48788 182 aa15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 EYA3Q99504 573 aa15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 HOOK1Q9UJC3 728 aaKnown RBP15.7■□□□□ 0.1
CCDC88A-211ENST00000471947 TRPC5Q9UL62 973 aaPredicted RBP15.69■□□□□ 0.1
CCDC88A-211ENST00000471947 FMR1NBQ8N0W7 255 aaPredicted RBP15.69■□□□□ 0.1
CCDC88A-211ENST00000471947 GJA10Q969M2 543 aa15.69■□□□□ 0.1
CCDC88A-211ENST00000471947 KCNF1Q9H3M0 494 aa15.69■□□□□ 0.1
CCDC88A-211ENST00000471947 FMNL1O95466 1100 aaPredicted RBP15.69■□□□□ 0.1
CCDC88A-211ENST00000471947 MMP1P03956 469 aa15.69■□□□□ 0.1
CCDC88A-211ENST00000471947 IFNAR1P17181 557 aa15.69■□□□□ 0.1
CCDC88A-211ENST00000471947 TTC38Q5R3I4 469 aa15.69■□□□□ 0.1
CCDC88A-211ENST00000471947 SRBD1Q8N5C6 995 aaKnown RBP15.69■□□□□ 0.1
CCDC88A-211ENST00000471947 CCDC34Q96HJ3 373 aa15.69■□□□□ 0.1
CCDC88A-211ENST00000471947 CD209Q9NNX6 404 aa15.69■□□□□ 0.1
CCDC88A-211ENST00000471947 SEC63Q9UGP8 760 aaKnown RBP15.69■□□□□ 0.1
CCDC88A-211ENST00000471947 LDHCP07864 332 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 TOP1P11387 765 aaKnown RBP15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 GRAPQ13588 217 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 SF3B3Q15393 1217 aaKnown RBP15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 TXNRD1Q16881 649 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 RRAGBQ5VZM2 374 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 SPICE1Q8N0Z3 855 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 GRAPLQ8TC17 118 aaPredicted RBP15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 ZNF384Q8TF68 577 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 COA7Q96BR5 231 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 PCDHAC2Q9Y5I4 1007 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 IGSF3O75054 1194 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 PDIA4P13667 645 aaKnown RBP15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 UBA7P41226 1012 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 ADKP55263 362 aaKnown RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms