RNA–Protein interactions for RNA: ENST00000470458.1

RFTN1-208, Transcript of raftlin, lipid raft linker 1, humanhuman

TSL 4

Gene RFTN1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFTN1-208ENST00000470458 SMCR8Q8TEV9 937 aaPredicted RBP13.05□□□□□ -0.32
RFTN1-208ENST00000470458 CNKSR2Q8WXI2 1034 aa13.05□□□□□ -0.32
RFTN1-208ENST00000470458 FSD1Q9BTV5 496 aa13.05□□□□□ -0.32
RFTN1-208ENST00000470458 EFCC1Q9HA90 598 aa13.05□□□□□ -0.32
RFTN1-208ENST00000470458 DCP1AQ9NPI6 582 aaPredicted RBP13.05□□□□□ -0.32
RFTN1-208ENST00000470458 SAP30BPQ9UHR5 308 aaKnown RBP13.05□□□□□ -0.32
RFTN1-208ENST00000470458 AGTPBP1Q9UPW5 1226 aa13.05□□□□□ -0.32
RFTN1-208ENST00000470458 SLC4A4Q9Y6R1 1079 aa13.05□□□□□ -0.32
RFTN1-208ENST00000470458 MYH8P13535 1937 aa13.04□□□□□ -0.32
RFTN1-208ENST00000470458 TRIM75PA6NK02 468 aa13.04□□□□□ -0.32
RFTN1-208ENST00000470458 ABCB5Q2M3G0 1257 aa13.04□□□□□ -0.32
RFTN1-208ENST00000470458 SH3D19Q5HYK7 790 aa13.04□□□□□ -0.32
RFTN1-208ENST00000470458 PPP4R3BQ5MIZ7 849 aa13.04□□□□□ -0.32
RFTN1-208ENST00000470458 GADL1Q6ZQY3 521 aa13.04□□□□□ -0.32
RFTN1-208ENST00000470458 FAM43AQ8N2R8 423 aa13.04□□□□□ -0.32
RFTN1-208ENST00000470458 NAV1Q8NEY1 1877 aa13.04□□□□□ -0.32
RFTN1-208ENST00000470458 HIP1O00291 1037 aa13.03□□□□□ -0.32
RFTN1-208ENST00000470458 CAPN2P17655 700 aa13.03□□□□□ -0.32
RFTN1-208ENST00000470458 PDE1AP54750 535 aa13.03□□□□□ -0.32
RFTN1-208ENST00000470458 SBK1Q52WX2 424 aa13.03□□□□□ -0.32
RFTN1-208ENST00000470458 USP17L2Q6R6M4 530 aa13.03□□□□□ -0.32
RFTN1-208ENST00000470458 CHD1LQ86WJ1 897 aa13.03□□□□□ -0.32
RFTN1-208ENST00000470458 LCORLQ8N3X6 602 aa13.03□□□□□ -0.32
RFTN1-208ENST00000470458 ARMT1Q9H993 441 aa13.03□□□□□ -0.32
RFTN1-208ENST00000470458 ZBTB21Q9ULJ3 1066 aa13.03□□□□□ -0.32
RFTN1-208ENST00000470458 PTPRFP10586 1907 aa13.03□□□□□ -0.32
RFTN1-208ENST00000470458 PHIPQ8WWQ0 1821 aa13.02□□□□□ -0.32
RFTN1-208ENST00000470458 PATL2C9JE40 543 aaKnown RBP13.02□□□□□ -0.33
RFTN1-208ENST00000470458 APPP05067 770 aa13.02□□□□□ -0.33
RFTN1-208ENST00000470458 HOXA7P31268 230 aaPredicted RBP13.02□□□□□ -0.33
RFTN1-208ENST00000470458 NT5C2P49902 561 aa13.02□□□□□ -0.33
RFTN1-208ENST00000470458 LACTBP83111 547 aaPredicted RBP13.02□□□□□ -0.33
RFTN1-208ENST00000470458 NUCB1Q02818 461 aa13.02□□□□□ -0.33
RFTN1-208ENST00000470458 C12orf60Q5U649 245 aa13.02□□□□□ -0.33
RFTN1-208ENST00000470458 TMEM179Q6ZVK1 233 aa13.02□□□□□ -0.33
RFTN1-208ENST00000470458 EXOC6Q8TAG9 804 aa13.02□□□□□ -0.33
RFTN1-208ENST00000470458 PI4K2BQ8TCG2 481 aa13.02□□□□□ -0.33
RFTN1-208ENST00000470458 STRBPQ96SI9 672 aaKnown RBP13.02□□□□□ -0.33
RFTN1-208ENST00000470458 OSBPL3Q9H4L5 887 aa13.02□□□□□ -0.33
RFTN1-208ENST00000470458 HELLSQ9NRZ9 838 aa13.02□□□□□ -0.33
RFTN1-208ENST00000470458 TRIM17Q9Y577 477 aa13.02□□□□□ -0.33
RFTN1-208ENST00000470458 CCDC85CA6NKD9 419 aa13.01□□□□□ -0.33
RFTN1-208ENST00000470458 FCGRTP55899 365 aa13.01□□□□□ -0.33
RFTN1-208ENST00000470458 IRX3P78415 501 aaPredicted RBP13.01□□□□□ -0.33
RFTN1-208ENST00000470458 GABPAQ06546 454 aa13.01□□□□□ -0.33
RFTN1-208ENST00000470458 C17orf99Q6UX52 265 aa13.01□□□□□ -0.33
RFTN1-208ENST00000470458 SDR42E1Q8WUS8 393 aa13.01□□□□□ -0.33
RFTN1-208ENST00000470458 EDC3Q96F86 508 aaKnown RBP13.01□□□□□ -0.33
RFTN1-208ENST00000470458 FEZ1Q99689 392 aa13.01□□□□□ -0.33
RFTN1-208ENST00000470458 ARHGEF10LQ9HCE6 1279 aa13.01□□□□□ -0.33
RFTN1-208ENST00000470458 USP17L12C9JPN9 530 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 USP17L21D6R901 530 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 GPAA1O43292 621 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 GH2P01242 217 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 TDO2P48775 406 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 PLCD1P51178 756 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 PDE4BQ07343 736 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 RAB3GAP1Q15042 981 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 GPAT2Q6NUI2 795 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 OTOP1Q7RTM1 612 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 LPAR1Q92633 364 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 LNPKQ9C0E8 428 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 KIAA1683Q9H0B3 1180 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 PUS7LQ9H0K6 701 aaKnown RBP13□□□□□ -0.33
RFTN1-208ENST00000470458 KANSL2Q9H9L4 492 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 MKNK2Q9HBH9 465 aa13□□□□□ -0.33
RFTN1-208ENST00000470458 FAM196BA6NMK8 535 aa12.99□□□□□ -0.33
RFTN1-208ENST00000470458 TRIM6-TRIM34B2RNG4 842 aa12.99□□□□□ -0.33
RFTN1-208ENST00000470458 MPHOSPH10O00566 681 aaKnown RBP12.99□□□□□ -0.33
RFTN1-208ENST00000470458 FMNL1O95466 1100 aaPredicted RBP12.99□□□□□ -0.33
RFTN1-208ENST00000470458 HMGCS2P54868 508 aa12.99□□□□□ -0.33
RFTN1-208ENST00000470458 MOGSQ13724 837 aa12.99□□□□□ -0.33
RFTN1-208ENST00000470458 B4GALNT3Q6L9W6 998 aa12.99□□□□□ -0.33
RFTN1-208ENST00000470458 C16orf86Q6ZW13 317 aa12.99□□□□□ -0.33
RFTN1-208ENST00000470458 CCAR1Q8IX12 1150 aaKnown RBP12.99□□□□□ -0.33
RFTN1-208ENST00000470458 ZNF444Q8N0Y2 327 aaPredicted RBP12.99□□□□□ -0.33
RFTN1-208ENST00000470458 COA7Q96BR5 231 aa12.99□□□□□ -0.33
RFTN1-208ENST00000470458 C12orf42Q96LP6 360 aa12.99□□□□□ -0.33
RFTN1-208ENST00000470458 DNAJC18Q9H819 358 aa12.99□□□□□ -0.33
RFTN1-208ENST00000470458 HOXC10Q9NYD6 342 aa12.99□□□□□ -0.33
RFTN1-208ENST00000470458 PTPN22Q9Y2R2 807 aa12.99□□□□□ -0.33
RFTN1-208ENST00000470458 BAZ2AQ9UIF9 1905 aaKnown RBP12.99□□□□□ -0.33
RFTN1-208ENST00000470458 SALL3Q9BXA9 1300 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 SIPA1L1O43166 1804 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 USP17L15C9J2P7 530 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 USP17L13C9JLJ4 530 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 USP17L11C9JVI0 530 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 USP17L18D6R9N7 530 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 USP17L22D6RA61 530 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 USP17L17D6RBQ6 530 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 USP17L19D6RCP7 530 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 USP17L20D6RJB6 530 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 GDF11O95390 407 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 PCP11498 1178 aaKnown RBP12.98□□□□□ -0.33
RFTN1-208ENST00000470458 SHMT1P34896 483 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 CCNA1P78396 465 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 USP17L24Q0WX57 530 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 MTMR2Q13614 643 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 FAM110CQ1W6H9 321 aa12.98□□□□□ -0.33
RFTN1-208ENST00000470458 MCMDC2Q4G0Z9 681 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms