RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 SLC10A5Q5PT55 438 aa5.88□□□□□ -1.47
SF3B1-208ENST00000470268 TPTE2Q6XPS3 522 aa5.88□□□□□ -1.47
SF3B1-208ENST00000470268 RPAP2Q8IXW5 612 aaPredicted RBP5.88□□□□□ -1.47
SF3B1-208ENST00000470268 CNBD1Q8NA66 436 aa5.88□□□□□ -1.47
SF3B1-208ENST00000470268 TTLL11Q8NHH1 800 aa5.88□□□□□ -1.47
SF3B1-208ENST00000470268 CHMP4BQ9H444 224 aaKnown RBP5.88□□□□□ -1.47
SF3B1-208ENST00000470268 AFDNP55196 1824 aaKnown RBP5.88□□□□□ -1.47
SF3B1-208ENST00000470268 CASZ1Q86V15 1759 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 SRGAP3O43295 1099 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 PDE8AO60658 829 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 RFX5P48382 616 aaPredicted RBP5.87□□□□□ -1.47
SF3B1-208ENST00000470268 CTSWP56202 376 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 LYPD4Q6UWN0 246 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 TSEN2Q8NCE0 465 aaKnown RBP5.87□□□□□ -1.47
SF3B1-208ENST00000470268 SSH3Q8TE77 659 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 HINFPQ9BQA5 517 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 NYXQ9GZU5 481 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 GREM2Q9H772 168 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 CXXC1Q9P0U4 656 aaPredicted RBP5.87□□□□□ -1.47
SF3B1-208ENST00000470268 PA2G4Q9UQ80 394 aaKnown RBP5.87□□□□□ -1.47
SF3B1-208ENST00000470268 IVNS1ABPQ9Y6Y0 642 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 GOLGB1Q14789 3259 aaKnown RBP5.87□□□□□ -1.47
SF3B1-208ENST00000470268 COL4A1P02462 1669 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 KDM2BQ8NHM5 1336 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 CELA2BP08218 269 aaPredicted RBP5.87□□□□□ -1.47
SF3B1-208ENST00000470268 GTF2E1P29083 439 aaPredicted RBP5.87□□□□□ -1.47
SF3B1-208ENST00000470268 WEE1P30291 646 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 PTPN12Q05209 780 aaKnown RBP5.87□□□□□ -1.47
SF3B1-208ENST00000470268 HDAC1Q13547 482 aaPredicted RBP5.87□□□□□ -1.47
SF3B1-208ENST00000470268 FOXR1Q6PIV2 292 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 TAS1R3Q7RTX0 852 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 LYSMD3Q7Z3D4 306 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 SLC51AQ86UW1 340 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 CCDC136Q96JN2 1154 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 MTFR1LQ9H019 292 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 ETNK1Q9HBU6 452 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 SEC31BQ9NQW1 1179 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 PARP3Q9Y6F1 533 aa5.87□□□□□ -1.47
SF3B1-208ENST00000470268 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.87□□□□□ -1.47
SF3B1-208ENST00000470268 KLRG2A4D1S0 409 aaPredicted RBP5.86□□□□□ -1.47
SF3B1-208ENST00000470268 PRMT3O60678 531 aa5.86□□□□□ -1.47
SF3B1-208ENST00000470268 SF3B3Q15393 1217 aaKnown RBP5.86□□□□□ -1.47
SF3B1-208ENST00000470268 ZNF395Q9H8N7 513 aaPredicted RBP5.86□□□□□ -1.47
SF3B1-208ENST00000470268 CHMP3Q9Y3E7 222 aa5.86□□□□□ -1.47
SF3B1-208ENST00000470268 TNRC6CQ9HCJ0 1690 aaKnown RBP5.86□□□□□ -1.47
SF3B1-208ENST00000470268 DDX60Q8IY21 1712 aaKnown RBP5.86□□□□□ -1.47
SF3B1-208ENST00000470268 NRXN2Q9P2S2 1712 aa5.86□□□□□ -1.47
SF3B1-208ENST00000470268 NPHP1O15259 732 aa5.86□□□□□ -1.47
SF3B1-208ENST00000470268 EPHA4P54764 986 aa5.86□□□□□ -1.47
SF3B1-208ENST00000470268 CRY2Q49AN0 593 aa5.86□□□□□ -1.47
SF3B1-208ENST00000470268 TMCO4Q5TGY1 634 aa5.86□□□□□ -1.47
SF3B1-208ENST00000470268 XAGE2Q96GT9 111 aa5.86□□□□□ -1.47
SF3B1-208ENST00000470268 NLRP3Q96P20 1036 aa5.86□□□□□ -1.47
SF3B1-208ENST00000470268 PUS3Q9BZE2 481 aaKnown RBP5.86□□□□□ -1.47
SF3B1-208ENST00000470268 DCTPP1Q9H773 170 aa5.86□□□□□ -1.47
SF3B1-208ENST00000470268 HDAC5Q9UQL6 1122 aa5.86□□□□□ -1.47
SF3B1-208ENST00000470268 EXOC6BQ9Y2D4 811 aa5.86□□□□□ -1.47
SF3B1-208ENST00000470268 RIC1Q4ADV7 1423 aa5.85□□□□□ -1.47
SF3B1-208ENST00000470268 RNF144AP50876 292 aaPredicted RBP5.85□□□□□ -1.47
SF3B1-208ENST00000470268 ST5P78524 1137 aa5.85□□□□□ -1.47
SF3B1-208ENST00000470268 LRRC24Q50LG9 513 aa5.85□□□□□ -1.47
SF3B1-208ENST00000470268 FOXD4L5Q5VV16 416 aaPredicted RBP5.85□□□□□ -1.47
SF3B1-208ENST00000470268 SMC5Q8IY18 1101 aa5.85□□□□□ -1.47
SF3B1-208ENST00000470268 CELF1Q92879 486 aaKnown RBP5.85□□□□□ -1.47
SF3B1-208ENST00000470268 PRIMPOLQ96LW4 560 aa5.85□□□□□ -1.47
SF3B1-208ENST00000470268 BRIP1Q9BX63 1249 aa5.85□□□□□ -1.47
SF3B1-208ENST00000470268 BCL11AQ9H165 835 aa5.85□□□□□ -1.47
SF3B1-208ENST00000470268 SIL1Q9H173 461 aa5.85□□□□□ -1.47
SF3B1-208ENST00000470268 RWDD1Q9H446 243 aaPredicted RBP5.85□□□□□ -1.47
SF3B1-208ENST00000470268 COPRSQ9NQ92 184 aa5.85□□□□□ -1.47
SF3B1-208ENST00000470268 MTMR7Q9Y216 660 aa5.85□□□□□ -1.47
SF3B1-208ENST00000470268 NOP58Q9Y2X3 529 aaKnown RBP5.85□□□□□ -1.47
SF3B1-208ENST00000470268 RTL9Q8NET4 1388 aa5.84□□□□□ -1.47
SF3B1-208ENST00000470268 SURF6O75683 361 aaKnown RBP5.84□□□□□ -1.47
SF3B1-208ENST00000470268 SASH1O94885 1247 aa5.84□□□□□ -1.47
SF3B1-208ENST00000470268 STAU1O95793 577 aaKnown RBP5.84□□□□□ -1.47
SF3B1-208ENST00000470268 SRGNP10124 158 aa5.84□□□□□ -1.47
SF3B1-208ENST00000470268 IGFBP4P22692 258 aa5.84□□□□□ -1.47
SF3B1-208ENST00000470268 IFIT5Q13325 482 aaKnown RBP5.84□□□□□ -1.47
SF3B1-208ENST00000470268 CCDC57Q2TAC2 916 aa5.84□□□□□ -1.47
SF3B1-208ENST00000470268 CCDC152Q4G0S7 254 aa5.84□□□□□ -1.47
SF3B1-208ENST00000470268 SND1Q7KZF4 910 aaKnown RBP eCLIP5.84□□□□□ -1.47
SF3B1-208ENST00000470268 ATG9AQ7Z3C6 839 aa5.84□□□□□ -1.47
SF3B1-208ENST00000470268 BEND7Q8N7W2 519 aaPredicted RBP5.84□□□□□ -1.47
SF3B1-208ENST00000470268 KDF1Q8NAX2 398 aaPredicted RBP5.84□□□□□ -1.47
SF3B1-208ENST00000470268 C10orf71Q711Q0 1435 aa5.84□□□□□ -1.47
SF3B1-208ENST00000470268 ANKRD18BA2A2Z9 1011 aa5.84□□□□□ -1.48
SF3B1-208ENST00000470268 MSTNO14793 375 aa5.84□□□□□ -1.48
SF3B1-208ENST00000470268 SMARCA5O60264 1052 aaPredicted RBP5.84□□□□□ -1.48
SF3B1-208ENST00000470268 HMMRO75330 724 aa5.84□□□□□ -1.48
SF3B1-208ENST00000470268 CHRNA5P30532 468 aa5.84□□□□□ -1.48
SF3B1-208ENST00000470268 GPC1P35052 558 aa5.84□□□□□ -1.48
SF3B1-208ENST00000470268 SMTNP53814 917 aa5.84□□□□□ -1.48
SF3B1-208ENST00000470268 CLN3Q13286 438 aa5.84□□□□□ -1.48
SF3B1-208ENST00000470268 GAS6Q14393 721 aa5.84□□□□□ -1.48
SF3B1-208ENST00000470268 MTFR1Q15390 333 aa5.84□□□□□ -1.48
SF3B1-208ENST00000470268 CENPQQ7L2Z9 268 aaPredicted RBP5.84□□□□□ -1.48
SF3B1-208ENST00000470268 TRIM22Q8IYM9 498 aa5.84□□□□□ -1.48
SF3B1-208ENST00000470268 TNS4Q8IZW8 715 aa5.84□□□□□ -1.48
SF3B1-208ENST00000470268 COL26A1Q96A83 441 aa5.84□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms