RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 AHDC1Q5TGY3 1603 aaPredicted RBP21.97■■□□□ 1.11
VIM-203ENST00000469543 ADAMTS3O15072 1205 aa21.97■■□□□ 1.11
VIM-203ENST00000469543 DEXIO95424 95 aa21.97■■□□□ 1.11
VIM-203ENST00000469543 KRBA2Q6ZNG9 492 aa21.97■■□□□ 1.11
VIM-203ENST00000469543 NSUN4Q96CB9 384 aaKnown RBP21.97■■□□□ 1.11
VIM-203ENST00000469543 COL22A1Q8NFW1 1626 aaPredicted RBP21.97■■□□□ 1.11
VIM-203ENST00000469543 STK36Q9NRP7 1315 aa21.97■■□□□ 1.11
VIM-203ENST00000469543 GTF2F1P35269 517 aaKnown RBP eCLIP21.97■■□□□ 1.11
VIM-203ENST00000469543 SETDB2Q96T68 719 aa21.97■■□□□ 1.11
VIM-203ENST00000469543 FBXO2Q9UK22 296 aaPredicted RBP21.97■■□□□ 1.11
VIM-203ENST00000469543 GPR101Q96P66 508 aaPredicted RBP21.96■■□□□ 1.11
VIM-203ENST00000469543 CASP1P29466 404 aa21.96■■□□□ 1.11
VIM-203ENST00000469543 IFIT1BQ5T764 474 aaKnown RBP21.96■■□□□ 1.11
VIM-203ENST00000469543 FANCLQ9NW38 375 aa21.96■■□□□ 1.11
VIM-203ENST00000469543 SERTAD1Q9UHV2 236 aa21.96■■□□□ 1.11
VIM-203ENST00000469543 CUTAO60888 179 aa21.95■■□□□ 1.1
VIM-203ENST00000469543 FANCCQ00597 558 aa21.95■■□□□ 1.1
VIM-203ENST00000469543 BCORQ6W2J9 1755 aa21.95■■□□□ 1.1
VIM-203ENST00000469543 MDM2Q00987 491 aaPredicted RBP21.95■■□□□ 1.1
VIM-203ENST00000469543 TMTC2Q8N394 836 aa21.95■■□□□ 1.1
VIM-203ENST00000469543 WASF1Q92558 559 aa21.95■■□□□ 1.1
VIM-203ENST00000469543 TIGD1Q96MW7 591 aa21.95■■□□□ 1.1
VIM-203ENST00000469543 NLRP3Q96P20 1036 aa21.95■■□□□ 1.1
VIM-203ENST00000469543 FBXO33Q7Z6M2 555 aa21.94■■□□□ 1.1
VIM-203ENST00000469543 EPSTI1Q96J88 318 aa21.94■■□□□ 1.1
VIM-203ENST00000469543 BPIFA3Q9BQP9 254 aa21.94■■□□□ 1.1
VIM-203ENST00000469543 CSRNP2Q9H175 543 aa21.94■■□□□ 1.1
VIM-203ENST00000469543 FUT2Q10981 343 aa21.94■■□□□ 1.1
VIM-203ENST00000469543 TROAPQ12815 778 aa21.94■■□□□ 1.1
VIM-203ENST00000469543 FOXP1Q9H334 677 aaPredicted RBP21.94■■□□□ 1.1
VIM-203ENST00000469543 CACNA1SQ13698 1873 aa21.94■■□□□ 1.1
VIM-203ENST00000469543 NRAPQ86VF7 1730 aa21.94■■□□□ 1.1
VIM-203ENST00000469543 CCDC196A0A1B0GTZ2 297 aa21.93■■□□□ 1.1
VIM-203ENST00000469543 TMEM232C9JQI7 657 aa21.93■■□□□ 1.1
VIM-203ENST00000469543 HIBADHP31937 336 aaKnown RBP21.93■■□□□ 1.1
VIM-203ENST00000469543 ANAPC4Q9UJX5 808 aa21.93■■□□□ 1.1
VIM-203ENST00000469543 PTPREP23469 700 aa21.93■■□□□ 1.1
VIM-203ENST00000469543 TRMT44Q8IYL2 757 aaKnown RBP21.93■■□□□ 1.1
VIM-203ENST00000469543 DCP1AQ9NPI6 582 aaPredicted RBP21.93■■□□□ 1.1
VIM-203ENST00000469543 A0A087X0B3 334 aa21.93■■□□□ 1.1
VIM-203ENST00000469543 NPHP1O15259 732 aa21.93■■□□□ 1.1
VIM-203ENST00000469543 ARHGEF1Q92888 912 aaKnown RBP21.93■■□□□ 1.1
VIM-203ENST00000469543 FAM237AA0A1B0GTK4 181 aa21.92■■□□□ 1.1
VIM-203ENST00000469543 ZPR1O75312 459 aa21.92■■□□□ 1.1
VIM-203ENST00000469543 GRIK5Q16478 980 aa21.92■■□□□ 1.1
VIM-203ENST00000469543 RILPL1Q5EBL4 403 aa21.92■■□□□ 1.1
VIM-203ENST00000469543 MTMR7Q9Y216 660 aa21.92■■□□□ 1.1
VIM-203ENST00000469543 SERPINC1P01008 464 aa21.92■■□□□ 1.1
VIM-203ENST00000469543 USP17L8P0C7I0 530 aa21.92■■□□□ 1.1
VIM-203ENST00000469543 AKAP17AQ02040 695 aaKnown RBP21.92■■□□□ 1.1
VIM-203ENST00000469543 CEP135Q66GS9 1140 aa21.92■■□□□ 1.1
VIM-203ENST00000469543 NARFQ9UHQ1 456 aa21.92■■□□□ 1.1
VIM-203ENST00000469543 MYH13Q9UKX3 1938 aa21.92■■□□□ 1.1
VIM-203ENST00000469543 TM4SF1P30408 202 aa21.91■■□□□ 1.1
VIM-203ENST00000469543 FMR1Q06787 632 aaKnown RBP eCLIP21.91■■□□□ 1.1
VIM-203ENST00000469543 SLC10A5Q5PT55 438 aa21.91■■□□□ 1.1
VIM-203ENST00000469543 STAMQ92783 540 aa21.91■■□□□ 1.1
VIM-203ENST00000469543 UBASH3AP57075 661 aa21.91■■□□□ 1.1
VIM-203ENST00000469543 ZNF174Q15697 407 aa21.91■■□□□ 1.1
VIM-203ENST00000469543 E4F1Q66K89 784 aaPredicted RBP21.91■■□□□ 1.1
VIM-203ENST00000469543 CATIPQ7Z7H3 387 aa21.91■■□□□ 1.1
VIM-203ENST00000469543 IQCA1Q86XH1 822 aa21.91■■□□□ 1.1
VIM-203ENST00000469543 CCAR2Q8N163 923 aaKnown RBP21.91■■□□□ 1.1
VIM-203ENST00000469543 SRBD1Q8N5C6 995 aaKnown RBP21.91■■□□□ 1.1
VIM-203ENST00000469543 TIAM2Q8IVF5 1701 aa21.91■■□□□ 1.1
VIM-203ENST00000469543 NFIXQ14938 502 aa21.9■■□□□ 1.1
VIM-203ENST00000469543 CFAP100Q494V2 611 aa21.9■■□□□ 1.1
VIM-203ENST00000469543 MED15Q96RN5 788 aa21.9■■□□□ 1.1
VIM-203ENST00000469543 BRIP1Q9BX63 1249 aa21.9■■□□□ 1.1
VIM-203ENST00000469543 OSBPL5Q9H0X9 879 aaPredicted RBP21.9■■□□□ 1.1
VIM-203ENST00000469543 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.9■■□□□ 1.1
VIM-203ENST00000469543 V9GYY5 206 aaPredicted RBP21.9■■□□□ 1.1
VIM-203ENST00000469543 SMTNL1A8MU46 457 aa21.9■■□□□ 1.1
VIM-203ENST00000469543 AFMP43652 599 aa21.9■■□□□ 1.1
VIM-203ENST00000469543 MYL5Q02045 173 aa21.9■■□□□ 1.1
VIM-203ENST00000469543 POSTNQ15063 836 aa21.9■■□□□ 1.1
VIM-203ENST00000469543 RNF26Q9BY78 433 aaPredicted RBP21.9■■□□□ 1.1
VIM-203ENST00000469543 MAN1B1Q9UKM7 699 aa21.9■■□□□ 1.1
VIM-203ENST00000469543 DIXDC1Q155Q3 683 aa21.89■■□□□ 1.1
VIM-203ENST00000469543 PTPN14Q15678 1187 aa21.89■■□□□ 1.1
VIM-203ENST00000469543 DYNLL2Q96FJ2 89 aa21.89■■□□□ 1.1
VIM-203ENST00000469543 CCNL1Q9UK58 526 aaPredicted RBP21.89■■□□□ 1.1
VIM-203ENST00000469543 NID2Q14112 1375 aa21.89■■□□□ 1.09
VIM-203ENST00000469543 TPTE2Q6XPS3 522 aa21.89■■□□□ 1.09
VIM-203ENST00000469543 DHX58Q96C10 678 aa21.89■■□□□ 1.09
VIM-203ENST00000469543 PHF20Q9BVI0 1012 aa21.89■■□□□ 1.09
VIM-203ENST00000469543 IKBKBO14920 756 aa21.88■■□□□ 1.09
VIM-203ENST00000469543 COBLO75128 1261 aa21.88■■□□□ 1.09
VIM-203ENST00000469543 RPS6KA4O75676 772 aa21.88■■□□□ 1.09
VIM-203ENST00000469543 NPY5RQ15761 445 aa21.88■■□□□ 1.09
VIM-203ENST00000469543 NYAP1Q6ZVC0 841 aa21.88■■□□□ 1.09
VIM-203ENST00000469543 MCM9Q9NXL9 1143 aa21.88■■□□□ 1.09
VIM-203ENST00000469543 RGS22Q8NE09 1264 aa21.88■■□□□ 1.09
VIM-203ENST00000469543 RREB1Q92766 1687 aa21.88■■□□□ 1.09
VIM-203ENST00000469543 ANKIB1Q9P2G1 1089 aa21.88■■□□□ 1.09
VIM-203ENST00000469543 SRPRBQ9Y5M8 271 aaKnown RBP21.88■■□□□ 1.09
VIM-203ENST00000469543 SFPQP23246 707 aaKnown RBP eCLIP21.87■■□□□ 1.09
VIM-203ENST00000469543 INTS13Q9NVM9 706 aa21.87■■□□□ 1.09
VIM-203ENST00000469543 OLFM4Q6UX06 510 aa21.87■■□□□ 1.09
VIM-203ENST00000469543 CTIFO43310 598 aaKnown RBP21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms